Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 C 1.38496 * 119.74112 * 34.72817 * 12 2 1 14 14 C 1.37819 * 118.90616 * 179.78240 * 13 12 2 15 15 C 1.39164 * 119.52270 * 0.21454 * 14 13 12 16 16 C 1.39133 * 118.05856 * 0.14264 * 15 14 13 17 17 N 1.31723 * 120.77059 * 359.75422 * 16 15 14 18 18 O 1.35953 * 111.15618 * 180.67397 * 15 14 13 19 19 C 1.43832 * 109.27498 * 341.11723 * 18 15 14 20 20 C 1.51327 * 133.32689 * 179.68491 * 14 13 12 21 21 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 23 23 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 1.08001 * 120.54499 * 359.97438 * 13 12 2 26 26 H 1.07993 * 119.61610 * 179.72498 * 16 15 14 27 27 H 1.08994 * 110.73784 * 269.20921 * 19 18 15 28 28 H 1.08999 * 110.88902 * 145.95637 * 19 18 15 29 29 H 1.08997 * 110.94487 * 313.89391 * 20 14 13 30 30 H 1.09000 * 110.93919 * 77.54683 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 6 1.3297 -1.7923 1.7341 14 6 1.8071 -2.4321 2.8576 15 6 2.9757 -1.9775 3.4612 16 6 3.6188 -0.8797 2.8981 17 7 3.1347 -0.2938 1.8222 18 8 3.2976 -2.7373 4.5417 19 6 2.1344 -3.4644 4.9742 20 6 1.3149 -3.6106 3.6694 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 1.9111 -0.5221 -4.4375 25 1 0.4242 -2.1310 1.2527 26 1 4.5251 -0.5031 3.3487 27 1 1.5775 -2.8945 5.7179 28 1 2.4115 -4.4425 5.3676 29 1 0.2466 -3.5273 3.8690 30 1 1.5435 -4.5513 3.1685 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = -16.448493 kcal Electronic energy + Delta-G solvation = -14452.317909 eV Core-core repulsion = 12019.281356 eV Total energy + Delta-G solvation = -2433.036553 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.31970 -39.72956 -36.29579 -34.17499 -33.66021 -31.02295 -30.17657 -27.20301 -25.27856 -24.42934 -23.06840 -21.52692 -18.91021 -18.37118 -18.08026 -17.32439 -16.83067 -16.35145 -15.39531 -15.29192 -14.83741 -14.56984 -14.11756 -13.97636 -13.71524 -13.33014 -12.92703 -12.88065 -12.51414 -12.19788 -12.08488 -11.95635 -11.39978 -11.25526 -10.75081 -10.45529 -10.37876 -9.14969 -8.30727 -6.36419 0.21318 0.26485 1.31895 1.40085 1.50546 2.25296 2.33163 2.79990 3.03598 3.35566 3.51140 3.57856 3.86176 4.16293 4.23529 4.35420 4.50942 4.62111 4.69210 4.72408 4.80842 4.86326 4.95158 5.02005 5.09600 5.21751 5.42466 5.57087 5.60871 6.06894 6.25140 6.66813 7.15516 7.27715 8.86212 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.052368 B = 0.007512 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.548297 B = 3726.453015 C = 3789.731430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.034 0.966 4 C -0.510 4.510 5 H 0.023 0.977 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.954 3.046 9 H -0.255 1.255 10 H -0.249 1.249 11 H -0.298 1.298 12 C 0.127 3.873 13 C -0.126 4.126 14 C -0.139 4.139 15 C 0.027 3.973 16 C 0.074 3.926 17 N -0.486 5.486 18 O -0.313 6.313 19 C 0.048 3.952 20 C -0.106 4.106 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.268 0.732 25 H 0.148 0.852 26 H 0.175 0.825 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -3.741 17.056 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 H 0.052 0.948 4 C -0.548 4.548 5 H 0.041 0.959 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.780 3.220 9 H -0.181 1.181 10 H -0.174 1.174 11 H -0.226 1.226 12 C -0.010 4.010 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.020 4.020 16 C -0.084 4.084 17 N -0.196 5.196 18 O -0.227 6.227 19 C -0.026 4.026 20 C -0.142 4.142 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.166 0.834 26 H 0.192 0.808 27 H 0.112 0.888 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.670 -3.087 16.690 17.603 hybrid contribution -0.478 -0.248 -0.551 0.770 sum -5.148 -3.334 16.139 17.265 Atomic orbital electron populations 1.22135 0.95482 1.02148 1.00249 1.18063 0.93791 0.95554 0.89062 0.94826 1.20944 1.31392 1.12277 0.90191 0.95859 1.25857 0.97308 1.00065 0.94962 1.70039 1.47443 1.42632 0.98678 0.85774 0.79345 0.79562 0.77335 1.18051 1.17353 1.22581 1.21420 0.90149 0.94421 0.95056 1.21333 1.02235 0.95596 0.95440 1.21521 0.97477 0.98770 0.97012 1.20681 0.96467 0.94173 0.90727 1.22323 1.01328 0.91541 0.93196 1.67409 1.12854 1.31163 1.08148 1.86757 1.36406 1.56321 1.43219 1.24224 0.83979 0.98454 0.95989 1.21939 1.03168 0.95245 0.93895 0.91471 0.91664 0.94184 0.92302 0.83404 0.80793 0.88794 0.84434 0.86156 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 8.09 71.99 0.58 -5.18 16 2 C 0.05 2.67 2.21 -12.28 -0.03 2.64 16 3 H 0.03 1.71 7.20 -2.39 -0.02 1.70 16 4 C -0.51 -30.00 9.13 25.60 0.23 -29.76 16 5 H 0.02 1.55 7.98 -2.91 -0.02 1.52 16 6 C 0.02 0.90 5.45 84.65 0.46 1.36 16 7 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 8 Si 0.95 44.89 24.37 68.60 1.67 46.56 16 9 H -0.26 -11.01 6.88 99.48 0.68 -10.32 16 10 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 12 C 0.13 5.67 5.74 42.62 0.24 5.91 16 13 C -0.13 -4.72 9.17 22.23 0.20 -4.51 16 14 C -0.14 -4.37 6.34 -19.54 -0.12 -4.49 16 15 C 0.03 0.89 7.09 22.71 0.16 1.05 16 16 C 0.07 2.69 11.22 84.92 0.95 3.65 16 17 N -0.49 -21.46 10.24 -183.05 -1.87 -23.33 16 18 O -0.31 -8.53 11.10 -93.02 -1.03 -9.56 16 19 C 0.05 0.80 8.01 72.59 0.58 1.38 16 20 C -0.11 -2.08 7.11 30.65 0.22 -1.86 16 21 H 0.07 2.53 6.51 -2.39 -0.02 2.51 16 22 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.04 1.65 3.28 -2.39 -0.01 1.64 16 24 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.15 5.03 6.33 -2.91 -0.02 5.01 16 26 H 0.18 5.26 8.06 -2.91 -0.02 5.24 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.46 248.10 3.62 -68.84 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.07 Total: 6.95 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.49 Total: -29.81 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.57 Total: -82.98 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -1.03 Total: -9.56 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.56 kcal Total: -72.46 3.62 -68.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.394 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds