Wall clock time and date at job start Mon Mar 30 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86808 * 119.99320 * 2 1 4 4 H 1.48498 * 109.47184 * 269.99945 * 3 2 1 5 5 H 1.48504 * 109.47188 * 29.99979 * 3 2 1 6 6 H 1.48502 * 109.46682 * 149.99768 * 3 2 1 7 7 C 1.40080 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.41548 * 120.00403 * 0.02562 * 7 2 1 10 10 N 1.33667 * 119.72842 * 359.97438 * 9 7 2 11 11 N 1.28757 * 121.11995 * 179.68570 * 10 9 7 12 12 C 1.32539 * 120.51978 * 0.62484 * 11 10 9 13 13 C 1.39165 * 119.43766 * 359.40277 * 12 11 10 14 14 C 1.50700 * 120.52895 * 180.30064 * 13 12 11 15 15 C 1.54264 * 110.03078 * 32.91295 * 14 13 12 16 16 C 1.54959 * 104.16127 * 217.13408 * 15 14 13 17 17 C 1.54890 * 102.77662 * 37.88828 * 16 15 14 18 18 C 1.53873 * 110.03379 * 275.69563 * 14 13 12 19 19 N 1.32032 * 118.94357 * 0.28473 * 13 12 11 20 20 H 0.96995 * 120.00657 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.28414 * 179.68886 * 12 11 10 22 22 H 1.09000 * 110.01610 * 154.30185 * 14 13 12 23 23 H 1.08997 * 110.48911 * 335.78104 * 15 14 13 24 24 H 1.09007 * 110.48645 * 98.42605 * 15 14 13 25 25 H 1.09003 * 110.72219 * 279.57994 * 16 15 14 26 26 H 1.09003 * 110.76984 * 156.22110 * 16 15 14 27 27 H 1.09001 * 110.48560 * 203.40715 * 17 16 15 28 28 H 1.08998 * 110.60064 * 80.81951 * 17 16 15 29 29 H 1.09000 * 110.03326 * 238.56891 * 18 14 13 30 30 H 1.09000 * 110.03426 * 359.94805 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4881 2.0466 -1.4000 5 1 1.4380 2.6528 0.7000 6 1 3.5382 1.4404 0.7001 7 6 2.0073 -1.2131 -0.0005 8 1 3.0873 -1.2130 -0.0001 9 6 1.2997 -2.4390 -0.0016 10 7 -0.0370 -2.4329 -0.0016 11 7 -0.7075 -3.5320 -0.0087 12 6 -0.0833 -4.7013 -0.0037 13 6 1.3079 -4.7339 -0.0033 14 6 2.0428 -6.0496 -0.0045 15 6 1.2384 -7.1034 -0.7933 16 6 1.4597 -8.4183 -0.0038 17 6 1.4445 -7.9399 1.4693 18 6 2.1742 -6.5813 1.4335 19 7 1.9738 -3.5938 -0.0023 20 1 -0.4851 0.8399 -0.0004 21 1 -0.6496 -5.6209 -0.0045 22 1 3.0305 -5.9248 -0.4482 23 1 0.1804 -6.8420 -0.8098 24 1 1.6250 -7.1973 -1.8082 25 1 2.4228 -8.8621 -0.2558 26 1 0.6483 -9.1220 -0.1897 27 1 1.9811 -8.6445 2.1047 28 1 0.4206 -7.8139 1.8211 29 1 3.2257 -6.7154 1.6874 30 1 1.7073 -5.8872 2.1323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260262509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:54 Heat of formation + Delta-G solvation = 45.364720 kcal Electronic energy + Delta-G solvation = -14394.336127 eV Core-core repulsion = 11996.272747 eV Total energy + Delta-G solvation = -2398.063380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81176 -37.64349 -34.04413 -33.05305 -31.10453 -28.49996 -28.03806 -26.67128 -23.11540 -22.63758 -20.38734 -19.67781 -17.74410 -16.71161 -15.74895 -15.11378 -15.02534 -14.55948 -13.67060 -13.62136 -13.04323 -12.85410 -11.73395 -11.46061 -11.27807 -11.13219 -10.95091 -10.91486 -10.85960 -10.54777 -10.43026 -10.26115 -10.16081 -9.93502 -9.42189 -9.32848 -8.26364 -7.37527 -6.73517 -4.91026 2.40722 2.55761 3.00968 3.04853 3.08243 3.81008 4.52597 4.82579 4.84944 4.90860 5.33131 5.61286 5.65184 5.72944 5.78874 5.83146 5.89948 5.96304 6.04259 6.08122 6.16612 6.25020 6.35736 6.51028 6.54846 6.68026 6.91730 7.12147 7.34549 7.99936 8.32840 8.40765 8.99330 10.06596 10.63440 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.060305 B = 0.007022 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.196273 B = 3986.378714 C = 4229.644061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.061 3.939 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.387 4.387 8 H 0.096 0.904 9 C 0.318 3.682 10 N -0.289 5.289 11 N -0.193 5.193 12 C -0.169 4.169 13 C 0.163 3.837 14 C -0.036 4.036 15 C -0.123 4.123 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.109 4.109 19 N -0.541 5.541 20 H 0.282 0.718 21 H 0.141 0.859 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -8.914 0.684 9.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.167 4.167 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.423 4.423 8 H 0.114 0.886 9 C 0.081 3.919 10 N -0.150 5.150 11 N -0.047 5.047 12 C -0.337 4.337 13 C 0.001 3.999 14 C -0.056 4.056 15 C -0.161 4.161 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.147 4.147 19 N -0.265 5.265 20 H 0.093 0.907 21 H 0.158 0.842 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.558 -7.758 0.685 8.197 hybrid contribution 0.772 -0.091 0.003 0.777 sum 3.330 -7.849 0.688 8.553 Atomic orbital electron populations 1.70062 1.07350 1.29045 1.26264 1.26181 0.95128 1.01695 0.93705 0.86041 0.80257 0.79453 0.79510 1.19060 1.19759 1.18206 1.19351 0.94901 0.87350 1.40747 0.88584 1.21312 0.88874 0.91316 0.90390 1.74854 1.06384 1.14466 1.19330 1.73460 1.33397 0.96017 1.01852 1.23777 0.93924 0.98876 1.17161 1.21804 0.92208 0.94275 0.91586 1.20567 0.98770 0.90149 0.96086 1.22589 1.01371 0.93716 0.98382 1.22489 1.01220 0.97061 0.95222 1.22366 1.00686 0.96403 0.96634 1.22080 1.00406 0.96212 0.96023 1.69041 1.40071 0.98215 1.19174 0.90659 0.84183 0.89850 0.90250 0.91710 0.91715 0.91728 0.92002 0.91576 0.91694 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.94 11.46 55.55 0.64 -18.30 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16 3 Si 0.92 18.35 29.56 -169.99 -5.02 13.32 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.39 -10.64 9.39 -37.63 -0.35 -10.99 16 8 H 0.10 2.49 7.85 -52.48 -0.41 2.08 16 9 C 0.32 9.24 7.43 -157.91 -1.17 8.07 16 10 N -0.29 -8.62 9.09 30.85 0.28 -8.34 16 11 N -0.19 -5.30 11.64 30.77 0.36 -4.95 16 12 C -0.17 -3.98 10.33 -16.90 -0.17 -4.16 16 13 C 0.16 3.75 5.63 -82.16 -0.46 3.28 16 14 C -0.04 -0.62 3.32 -90.66 -0.30 -0.92 16 15 C -0.12 -1.75 6.25 -25.04 -0.16 -1.91 16 16 C -0.12 -1.41 6.91 -24.70 -0.17 -1.58 16 17 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 18 C -0.11 -1.65 6.45 -25.62 -0.17 -1.82 16 19 N -0.54 -14.41 10.41 -8.74 -0.09 -14.50 16 20 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 21 H 0.14 2.78 6.19 -52.49 -0.33 2.45 16 22 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 23 H 0.08 1.19 5.41 -51.93 -0.28 0.91 16 24 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 LS Contribution 253.91 15.07 3.83 3.83 Total: -1.00 -31.06 253.91 -6.75 -37.81 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.51 Total: 1.38 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.22 Total: -10.25 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 1.18 Total: -46.08 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.06 -6.75 -37.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.172 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds