Wall clock time and date at job start Mon Mar 30 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86808 * 119.99320 * 2 1 4 4 H 1.48498 * 109.47184 * 269.99945 * 3 2 1 5 5 H 1.48504 * 109.47188 * 29.99979 * 3 2 1 6 6 H 1.48502 * 109.46682 * 149.99768 * 3 2 1 7 7 C 1.40080 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.41548 * 120.00403 * 0.02562 * 7 2 1 10 10 N 1.33667 * 119.72842 * 359.97438 * 9 7 2 11 11 N 1.28757 * 121.11995 * 179.68570 * 10 9 7 12 12 C 1.32539 * 120.51978 * 0.62484 * 11 10 9 13 13 C 1.39165 * 119.43766 * 359.40277 * 12 11 10 14 14 C 1.50700 * 120.52895 * 180.30064 * 13 12 11 15 15 C 1.54264 * 110.03078 * 32.91295 * 14 13 12 16 16 C 1.54959 * 104.16127 * 217.13408 * 15 14 13 17 17 C 1.54890 * 102.77662 * 37.88828 * 16 15 14 18 18 C 1.53873 * 110.03379 * 275.69563 * 14 13 12 19 19 N 1.32032 * 118.94357 * 0.28473 * 13 12 11 20 20 H 0.96995 * 120.00657 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.28414 * 179.68886 * 12 11 10 22 22 H 1.09000 * 110.01610 * 154.30185 * 14 13 12 23 23 H 1.08997 * 110.48911 * 335.78104 * 15 14 13 24 24 H 1.09007 * 110.48645 * 98.42605 * 15 14 13 25 25 H 1.09003 * 110.72219 * 279.57994 * 16 15 14 26 26 H 1.09003 * 110.76984 * 156.22110 * 16 15 14 27 27 H 1.09001 * 110.48560 * 203.40715 * 17 16 15 28 28 H 1.08998 * 110.60064 * 80.81951 * 17 16 15 29 29 H 1.09000 * 110.03326 * 238.56891 * 18 14 13 30 30 H 1.09000 * 110.03426 * 359.94805 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4881 2.0466 -1.4000 5 1 1.4380 2.6528 0.7000 6 1 3.5382 1.4404 0.7001 7 6 2.0073 -1.2131 -0.0005 8 1 3.0873 -1.2130 -0.0001 9 6 1.2997 -2.4390 -0.0016 10 7 -0.0370 -2.4329 -0.0016 11 7 -0.7075 -3.5320 -0.0087 12 6 -0.0833 -4.7013 -0.0037 13 6 1.3079 -4.7339 -0.0033 14 6 2.0428 -6.0496 -0.0045 15 6 1.2384 -7.1034 -0.7933 16 6 1.4597 -8.4183 -0.0038 17 6 1.4445 -7.9399 1.4693 18 6 2.1742 -6.5813 1.4335 19 7 1.9738 -3.5938 -0.0023 20 1 -0.4851 0.8399 -0.0004 21 1 -0.6496 -5.6209 -0.0045 22 1 3.0305 -5.9248 -0.4482 23 1 0.1804 -6.8420 -0.8098 24 1 1.6250 -7.1973 -1.8082 25 1 2.4228 -8.8621 -0.2558 26 1 0.6483 -9.1220 -0.1897 27 1 1.9811 -8.6445 2.1047 28 1 0.4206 -7.8139 1.8211 29 1 3.2257 -6.7154 1.6874 30 1 1.7073 -5.8872 2.1323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260262509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:54 Heat of formation + Delta-G solvation = 25.139523 kcal Electronic energy + Delta-G solvation = -14395.213157 eV Core-core repulsion = 11996.272747 eV Total energy + Delta-G solvation = -2398.940410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.72135 -38.97200 -35.99880 -34.97196 -32.94193 -29.64889 -29.50147 -28.66705 -25.00943 -24.47414 -21.44551 -21.14473 -19.64729 -18.59253 -17.33860 -16.80232 -16.47239 -16.12778 -15.58465 -15.19266 -14.37406 -14.10955 -13.41456 -13.14247 -13.05601 -12.73334 -12.34524 -12.22719 -12.03721 -11.93308 -11.89420 -11.85904 -11.78834 -11.40061 -11.23692 -11.11811 -10.23063 -9.40413 -8.64346 -6.99174 0.47875 0.57305 1.37241 1.49264 1.56075 2.14874 2.61648 3.33707 3.53580 3.67507 3.84697 3.90392 4.05799 4.16966 4.49249 4.59342 4.60573 4.66397 4.76546 4.89732 4.95651 5.01533 5.11373 5.16998 5.26151 5.34910 5.41487 5.51096 5.55636 5.94755 6.30409 6.43599 6.98109 8.20387 8.58541 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.060305 B = 0.007022 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.196273 B = 3986.378714 C = 4229.644061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.016 3.984 3 Si 1.011 2.989 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.417 4.417 8 H 0.100 0.900 9 C 0.288 3.712 10 N -0.338 5.338 11 N -0.226 5.226 12 C -0.159 4.159 13 C 0.167 3.833 14 C -0.037 4.037 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.107 4.107 19 N -0.563 5.563 20 H 0.292 0.708 21 H 0.179 0.821 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 -10.327 0.693 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.208 4.208 3 Si 0.828 3.172 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.454 4.454 8 H 0.118 0.882 9 C 0.050 3.950 10 N -0.197 5.197 11 N -0.076 5.076 12 C -0.330 4.330 13 C 0.004 3.996 14 C -0.057 4.057 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.146 4.146 19 N -0.288 5.288 20 H 0.103 0.897 21 H 0.196 0.804 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.535 -9.172 0.693 9.854 hybrid contribution 0.450 0.163 0.003 0.478 sum 3.984 -9.009 0.697 9.876 Atomic orbital electron populations 1.70150 1.09358 1.30804 1.26529 1.27305 0.95948 1.05292 0.92230 0.84794 0.78699 0.73683 0.80015 1.18029 1.18396 1.17461 1.19787 0.95341 0.88302 1.41924 0.88173 1.21774 0.89247 0.92745 0.91227 1.74795 1.06873 1.15577 1.22445 1.73312 1.34304 0.97017 1.03014 1.24422 0.94831 0.99030 1.14686 1.22777 0.92656 0.95497 0.88684 1.20807 0.98543 0.88013 0.98356 1.22607 1.00149 0.94180 0.98970 1.22474 1.03083 0.95669 0.93560 1.22369 1.00448 0.94791 0.97927 1.22093 1.01638 0.97317 0.93529 1.69126 1.40511 0.98841 1.20281 0.89688 0.80390 0.89938 0.91064 0.90746 0.89993 0.89536 0.89491 0.91775 0.90233 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.32 11.46 21.84 0.25 -41.07 16 2 C 0.02 0.84 5.50 85.31 0.47 1.30 16 3 Si 1.01 37.65 29.56 68.60 2.03 39.68 16 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 5 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.42 -23.72 9.39 23.53 0.22 -23.50 16 8 H 0.10 5.36 7.85 -2.91 -0.02 5.34 16 9 C 0.29 17.38 7.43 135.00 1.00 18.38 16 10 N -0.34 -20.98 9.09 -56.32 -0.51 -21.50 16 11 N -0.23 -12.76 11.64 -56.56 -0.66 -13.42 16 12 C -0.16 -7.50 10.33 84.81 0.88 -6.62 16 13 C 0.17 7.68 5.63 42.75 0.24 7.92 16 14 C -0.04 -1.24 3.32 -10.82 -0.04 -1.27 16 15 C -0.12 -3.11 6.25 31.69 0.20 -2.91 16 16 C -0.11 -2.05 6.91 31.91 0.22 -1.83 16 17 C -0.12 -2.46 6.83 31.67 0.22 -2.24 16 18 C -0.11 -3.06 6.45 31.32 0.20 -2.86 16 19 N -0.56 -30.84 10.41 -181.56 -1.89 -32.73 16 20 H 0.29 14.26 8.29 -92.71 -0.77 13.50 16 21 H 0.18 6.81 6.19 -2.91 -0.02 6.79 16 22 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 23 H 0.07 1.94 5.41 -2.39 -0.01 1.93 16 24 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 1.18 7.67 -2.39 -0.02 1.16 16 Total: -1.00 -71.07 253.91 3.97 -67.10 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.14 Total: 15.57 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 3.61 Total: -13.63 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -2.81 Total: -108.72 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -71.07 3.97 -67.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.235 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds