Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47914 * 111.00375 * 2 1 4 4 C 1.54594 * 102.63271 * 149.22131 * 3 2 1 5 5 C 1.51593 * 102.85356 * 334.47991 * 4 3 2 6 6 C 1.38014 * 131.47702 * 196.12482 * 5 4 3 7 7 C 1.38147 * 120.17145 * 179.09403 * 6 5 4 8 8 C 1.38957 * 119.81589 * 0.52502 * 7 6 5 9 9 O 1.35747 * 119.94021 * 179.86823 * 8 7 6 10 10 C 1.34829 * 117.00507 * 5.24655 * 9 8 7 11 11 H 1.08009 * 119.99837 * 354.92788 * 10 9 8 12 12 C 1.38655 * 120.00561 * 174.65029 * 10 9 8 13 13 N 1.31553 * 119.99352 * 0.28087 * 12 10 9 14 14 Si 1.86792 * 120.00250 * 180.27466 * 12 10 9 15 15 H 1.48501 * 109.47146 * 59.99989 * 14 12 10 16 16 H 1.48505 * 109.47215 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47296 * 300.00244 * 14 12 10 18 18 C 1.38543 * 120.11598 * 359.58929 * 8 7 6 19 19 C 1.39051 * 107.93781 * 15.78366 * 5 4 3 20 20 H 1.09003 * 109.46815 * 300.05847 * 1 2 3 21 21 H 1.08997 * 109.46934 * 60.05045 * 1 2 3 22 22 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 23 23 H 1.09003 * 110.77181 * 30.93663 * 3 2 1 24 24 H 1.08996 * 110.77577 * 267.50944 * 3 2 1 25 25 H 1.08999 * 110.73029 * 216.13786 * 4 3 2 26 26 H 1.08997 * 110.88665 * 92.89830 * 4 3 2 27 27 H 1.08005 * 119.90792 * 359.31670 * 6 5 4 28 28 H 1.08005 * 120.09480 * 180.27282 * 7 6 5 29 29 H 0.97008 * 119.99917 * 180.02562 * 13 12 10 30 30 H 1.07997 * 119.93137 * 180.28087 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3302 1.2320 0.7719 5 6 3.0839 0.0114 1.6367 6 6 3.7473 -0.4716 2.7464 7 6 3.3033 -1.6182 3.3762 8 6 2.1923 -2.2914 2.8829 9 8 1.7554 -3.4198 3.4982 10 6 2.3753 -3.7722 4.6426 11 1 3.2328 -3.2129 4.9866 12 6 1.9084 -4.8491 5.3808 13 7 0.8640 -5.5303 4.9617 14 14 2.7625 -5.3325 6.9701 15 1 2.7135 -4.1955 7.9240 16 1 2.0752 -6.5074 7.5639 17 1 4.1781 -5.6793 6.6857 18 6 1.5261 -1.8097 1.7677 19 6 1.9709 -0.6527 1.1330 20 1 -0.3633 0.5148 0.8895 21 1 -0.3633 0.5130 -0.8904 22 1 -0.3634 -1.0276 0.0005 23 1 1.3216 2.0551 0.5239 24 1 2.1791 1.7259 -1.0181 25 1 3.5188 2.1105 1.3890 26 1 4.1597 1.0584 0.0864 27 1 4.6136 0.0503 3.1254 28 1 3.8207 -1.9926 4.2471 29 1 0.5370 -6.2835 5.4783 30 1 0.6602 -2.3328 1.3896 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260327183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = 11.827822 kcal Electronic energy + Delta-G solvation = -14314.837042 eV Core-core repulsion = 11883.026642 eV Total energy + Delta-G solvation = -2431.810400 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09169 -38.05893 -34.97398 -32.43513 -31.74874 -29.29340 -27.56968 -25.61287 -24.86995 -22.41750 -20.55566 -20.51670 -17.78572 -16.78089 -15.69906 -15.45636 -14.85967 -14.36534 -14.03368 -13.62918 -13.52175 -13.09977 -12.62711 -12.25800 -12.05487 -11.80947 -11.50415 -11.33551 -11.13537 -11.01775 -10.75153 -10.49236 -10.42145 -9.36191 -9.23994 -8.76996 -7.57506 -6.94614 -6.43292 -4.02594 2.16724 2.33743 3.14309 3.15304 3.18207 3.90320 4.10116 4.54585 4.94524 5.03929 5.11795 5.29373 5.37321 5.45715 5.63424 5.66376 5.84710 5.89286 5.99299 6.14103 6.18454 6.27815 6.45561 6.55923 6.99788 7.04409 7.18432 7.35552 7.45944 7.51217 7.92480 8.01983 9.02233 9.72384 10.74788 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053614 B = 0.007016 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.123988 B = 3990.138042 C = 4448.153289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.480 5.480 3 C 0.047 3.953 4 C -0.068 4.068 5 C -0.234 4.234 6 C -0.037 4.037 7 C -0.249 4.249 8 C 0.175 3.825 9 O -0.176 6.176 10 C -0.392 4.392 11 H 0.092 0.908 12 C 0.039 3.961 13 N -0.864 5.864 14 Si 0.941 3.059 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.206 4.206 19 C 0.129 3.871 20 H 0.036 0.964 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.270 0.730 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 10.796 -5.253 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.195 5.195 3 C -0.080 4.080 4 C -0.105 4.105 5 C -0.238 4.238 6 C -0.056 4.056 7 C -0.269 4.269 8 C 0.121 3.879 9 O -0.079 6.079 10 C -0.468 4.468 11 H 0.110 0.890 12 C -0.165 4.165 13 N -0.498 5.498 14 Si 0.766 3.234 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.228 4.228 19 C 0.032 3.968 20 H 0.054 0.946 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.027 10.196 -5.754 11.882 hybrid contribution 0.200 0.058 1.374 1.390 sum 2.227 10.254 -4.380 11.371 Atomic orbital electron populations 1.22514 0.86471 1.03148 1.00733 1.60607 1.08698 1.14107 1.36118 1.23197 0.95827 0.88213 1.00740 1.21007 0.96739 0.96011 0.96748 1.19945 1.02004 1.00942 1.00868 1.19963 0.97419 0.94884 0.93303 1.21053 1.01349 0.99428 1.05097 1.18918 0.91312 0.86335 0.91341 1.83964 1.55000 1.33336 1.35649 1.21299 1.12726 1.14808 0.98008 0.89024 1.25289 0.96341 0.95675 0.99190 1.70034 1.22564 1.18763 1.38488 0.85777 0.79019 0.78445 0.80162 1.19514 1.20290 1.19482 1.19277 1.04720 0.99143 0.99673 1.19037 0.95196 0.94363 0.88242 0.94563 0.91315 0.90594 0.92790 0.89551 0.91423 0.90916 0.87451 0.85245 0.91985 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.16 60.06 0.55 0.81 16 2 N -0.48 -7.94 5.31 -176.86 -0.94 -8.88 16 3 C 0.05 0.62 6.91 -2.43 -0.02 0.60 16 4 C -0.07 -0.96 7.04 -26.61 -0.19 -1.15 16 5 C -0.23 -4.37 6.23 -103.96 -0.65 -5.01 16 6 C -0.04 -0.71 10.02 -39.70 -0.40 -1.11 16 7 C -0.25 -5.58 9.17 -39.35 -0.36 -5.94 16 8 C 0.18 4.38 6.64 -39.20 -0.26 4.12 16 9 O -0.18 -5.12 9.75 0.06 0.00 -5.12 16 10 C -0.39 -11.06 9.48 30.89 0.29 -10.77 16 11 H 0.09 2.38 5.19 -52.48 -0.27 2.11 16 12 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 13 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 14 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 C -0.21 -4.64 9.47 -39.09 -0.37 -5.01 16 19 C 0.13 2.55 5.95 -83.42 -0.50 2.06 16 20 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 1.10 7.30 -51.93 -0.38 0.73 16 23 H 0.05 0.66 7.84 -51.93 -0.41 0.25 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.13 2.85 5.63 -52.48 -0.30 2.55 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.12 2.55 7.36 -52.49 -0.39 2.16 16 LS Contribution 255.53 15.07 3.85 3.85 Total: -1.00 -31.13 255.53 -6.75 -37.88 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.41 Total: 1.86 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.99 Total: -20.42 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -0.18 Total: -33.62 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.13 -6.75 -37.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.706 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds