Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47914 * 111.00375 * 2 1 4 4 C 1.54594 * 102.63271 * 149.22131 * 3 2 1 5 5 C 1.51593 * 102.85356 * 334.47991 * 4 3 2 6 6 C 1.38014 * 131.47702 * 196.12482 * 5 4 3 7 7 C 1.38147 * 120.17145 * 179.09403 * 6 5 4 8 8 C 1.38957 * 119.81589 * 0.52502 * 7 6 5 9 9 O 1.35747 * 119.94021 * 179.86823 * 8 7 6 10 10 C 1.34829 * 117.00507 * 5.24655 * 9 8 7 11 11 H 1.08009 * 119.99837 * 354.92788 * 10 9 8 12 12 C 1.38655 * 120.00561 * 174.65029 * 10 9 8 13 13 N 1.31553 * 119.99352 * 0.28087 * 12 10 9 14 14 Si 1.86792 * 120.00250 * 180.27466 * 12 10 9 15 15 H 1.48501 * 109.47146 * 59.99989 * 14 12 10 16 16 H 1.48505 * 109.47215 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47296 * 300.00244 * 14 12 10 18 18 C 1.38543 * 120.11598 * 359.58929 * 8 7 6 19 19 C 1.39051 * 107.93781 * 15.78366 * 5 4 3 20 20 H 1.09003 * 109.46815 * 300.05847 * 1 2 3 21 21 H 1.08997 * 109.46934 * 60.05045 * 1 2 3 22 22 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 23 23 H 1.09003 * 110.77181 * 30.93663 * 3 2 1 24 24 H 1.08996 * 110.77577 * 267.50944 * 3 2 1 25 25 H 1.08999 * 110.73029 * 216.13786 * 4 3 2 26 26 H 1.08997 * 110.88665 * 92.89830 * 4 3 2 27 27 H 1.08005 * 119.90792 * 359.31670 * 6 5 4 28 28 H 1.08005 * 120.09480 * 180.27282 * 7 6 5 29 29 H 0.97008 * 119.99917 * 180.02562 * 13 12 10 30 30 H 1.07997 * 119.93137 * 180.28087 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3302 1.2320 0.7719 5 6 3.0839 0.0114 1.6367 6 6 3.7473 -0.4716 2.7464 7 6 3.3033 -1.6182 3.3762 8 6 2.1923 -2.2914 2.8829 9 8 1.7554 -3.4198 3.4982 10 6 2.3753 -3.7722 4.6426 11 1 3.2328 -3.2129 4.9866 12 6 1.9084 -4.8491 5.3808 13 7 0.8640 -5.5303 4.9617 14 14 2.7625 -5.3325 6.9701 15 1 2.7135 -4.1955 7.9240 16 1 2.0752 -6.5074 7.5639 17 1 4.1781 -5.6793 6.6857 18 6 1.5261 -1.8097 1.7677 19 6 1.9709 -0.6527 1.1330 20 1 -0.3633 0.5148 0.8895 21 1 -0.3633 0.5130 -0.8904 22 1 -0.3634 -1.0276 0.0005 23 1 1.3216 2.0551 0.5239 24 1 2.1791 1.7259 -1.0181 25 1 3.5188 2.1105 1.3890 26 1 4.1597 1.0584 0.0864 27 1 4.6136 0.0503 3.1254 28 1 3.8207 -1.9926 4.2471 29 1 0.5370 -6.2835 5.4783 30 1 0.6602 -2.3328 1.3896 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260327183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = -9.226319 kcal Electronic energy + Delta-G solvation = -14315.750018 eV Core-core repulsion = 11883.026642 eV Total energy + Delta-G solvation = -2432.723376 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58750 -39.84264 -36.58992 -34.32662 -33.24063 -30.86109 -29.11028 -27.31918 -26.44032 -23.82315 -22.27995 -21.91624 -19.60423 -18.67022 -17.12924 -16.73367 -16.39131 -16.16671 -15.74714 -15.45840 -15.04586 -14.41252 -14.04663 -13.95770 -13.50744 -13.31305 -13.03313 -12.84337 -12.55935 -12.36581 -12.16645 -12.13815 -12.02798 -11.21334 -10.87901 -10.56782 -9.26805 -8.52401 -8.47100 -6.16249 0.51553 0.67072 1.35455 1.46688 1.52304 2.16786 2.64709 2.83283 3.15551 3.57665 3.78699 3.83157 4.15458 4.24178 4.33094 4.46725 4.51742 4.60846 4.68095 4.79767 4.89109 4.97862 5.04095 5.11758 5.13466 5.44526 5.62736 5.69032 5.75241 6.02383 6.07276 6.33240 6.97127 7.77148 8.76072 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053614 B = 0.007016 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.123988 B = 3990.138042 C = 4448.153289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.491 5.491 3 C 0.046 3.954 4 C -0.065 4.065 5 C -0.225 4.225 6 C -0.033 4.033 7 C -0.263 4.263 8 C 0.139 3.861 9 O -0.231 6.231 10 C -0.416 4.416 11 H 0.104 0.896 12 C -0.023 4.023 13 N -0.922 5.922 14 Si 1.021 2.979 15 H -0.256 1.256 16 H -0.272 1.272 17 H -0.256 1.256 18 C -0.227 4.227 19 C 0.129 3.871 20 H 0.035 0.965 21 H 0.104 0.896 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.126 0.874 29 H 0.273 0.727 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 13.858 -5.902 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.205 5.205 3 C -0.079 4.079 4 C -0.102 4.102 5 C -0.228 4.228 6 C -0.051 4.051 7 C -0.283 4.283 8 C 0.088 3.912 9 O -0.137 6.137 10 C -0.492 4.492 11 H 0.122 0.878 12 C -0.221 4.221 13 N -0.560 5.560 14 Si 0.840 3.160 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.180 1.180 18 C -0.249 4.249 19 C 0.030 3.970 20 H 0.054 0.946 21 H 0.123 0.877 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.137 0.863 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.082 0.918 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.714 13.324 -6.452 15.263 hybrid contribution -0.307 -0.610 1.284 1.455 sum 3.406 12.713 -5.168 14.140 Atomic orbital electron populations 1.22584 0.85096 1.02787 1.02453 1.60617 1.10042 1.16111 1.33774 1.23448 0.95331 0.86249 1.02904 1.21187 0.97849 0.94590 0.96557 1.20657 1.00286 1.01872 1.00017 1.20347 0.98202 0.93547 0.93028 1.21163 1.00864 1.00697 1.05542 1.19411 0.92938 0.86504 0.92373 1.83927 1.56961 1.35913 1.36911 1.21849 1.13421 1.15527 0.98389 0.87838 1.26644 0.97069 0.95221 1.03126 1.70192 1.25081 1.20030 1.40732 0.84619 0.78092 0.78415 0.74899 1.18044 1.19620 1.18048 1.19388 1.04848 1.00683 0.99968 1.19301 0.95643 0.93329 0.88694 0.94591 0.87724 0.92224 0.91207 0.86304 0.88468 0.89179 0.83473 0.85662 0.91808 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.16 127.69 1.17 1.61 16 2 N -0.49 -14.82 5.31 -713.45 -3.79 -18.61 16 3 C 0.05 0.98 6.91 86.65 0.60 1.58 16 4 C -0.06 -1.49 7.04 30.68 0.22 -1.27 16 5 C -0.22 -7.69 6.23 -19.44 -0.12 -7.82 16 6 C -0.03 -1.19 10.02 22.19 0.22 -0.97 16 7 C -0.26 -11.91 9.17 22.42 0.21 -11.71 16 8 C 0.14 7.30 6.64 22.51 0.15 7.45 16 9 O -0.23 -14.38 9.75 -22.69 -0.22 -14.60 16 10 C -0.42 -24.73 9.48 67.92 0.64 -24.09 16 11 H 0.10 5.60 5.19 -2.91 -0.02 5.59 16 12 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 13 N -0.92 -57.57 13.67 21.61 0.30 -57.28 16 14 Si 1.02 43.23 29.55 68.60 2.03 45.26 16 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 C -0.23 -10.65 9.47 22.59 0.21 -10.43 16 19 C 0.13 4.94 5.95 38.27 0.23 5.17 16 20 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 21 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.06 1.74 7.30 -2.39 -0.02 1.72 16 23 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 24 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 27 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 28 H 0.13 5.65 5.63 -2.91 -0.02 5.63 16 29 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 30 H 0.10 4.91 7.36 -2.91 -0.02 4.89 16 Total: -1.00 -72.89 255.53 3.45 -69.45 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.14 Total: 17.13 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 3.99 Total: -41.35 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -3.49 Total: -75.88 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.22 Total: -14.60 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.89 3.45 -69.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260327183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.221 kcal (2) G-P(sol) polarization free energy of solvation -72.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds