Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31802 * 120.56843 * 2 1 4 4 C 1.32771 * 121.01556 * 180.28469 * 3 2 1 5 5 N 1.37931 * 118.91428 * 179.69592 * 4 3 2 6 6 C 1.46505 * 119.99875 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.49517 * 223.62129 * 6 5 4 8 8 C 1.52997 * 117.49682 * 155.00232 * 6 5 4 9 9 N 1.32800 * 122.16760 * 359.67628 * 4 3 2 10 10 C 1.31773 * 121.01589 * 0.02562 * 9 4 3 11 11 C 1.41175 * 120.56289 * 179.70597 * 2 1 3 12 12 C 1.41249 * 120.96939 * 0.02894 * 11 2 1 13 13 H 1.08008 * 120.00138 * 28.42176 * 12 11 2 14 14 C 1.39879 * 120.00254 * 208.42297 * 12 11 2 15 15 N 1.30893 * 120.00676 * 196.79663 * 14 12 11 16 16 Si 1.86802 * 119.99667 * 16.79778 * 14 12 11 17 17 H 1.48499 * 109.47166 * 269.99969 * 16 14 12 18 18 H 1.48500 * 109.47214 * 29.99883 * 16 14 12 19 19 H 1.48499 * 109.47199 * 150.00347 * 16 14 12 20 20 H 1.09000 * 109.47178 * 270.29370 * 1 2 3 21 21 H 1.09002 * 109.47087 * 30.29197 * 1 2 3 22 22 H 1.09001 * 109.47209 * 150.28927 * 1 2 3 23 23 H 0.96996 * 120.00246 * 359.97438 * 5 4 3 24 24 H 1.08990 * 115.55007 * 9.33137 * 6 5 4 25 25 H 1.08995 * 117.50082 * 0.02562 * 7 6 5 26 26 H 1.09001 * 117.49308 * 145.02109 * 7 6 5 27 27 H 1.08996 * 117.49869 * 214.97995 * 8 6 5 28 28 H 1.09002 * 117.49874 * 359.97438 * 8 6 5 29 29 H 1.07997 * 120.56073 * 179.97438 * 10 9 4 30 30 H 0.97007 * 119.99265 * 355.47468 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1773 1.1348 0.0000 4 6 3.5049 1.1452 -0.0057 5 7 4.1623 2.3578 -0.0118 6 6 5.6269 2.3969 -0.0176 7 6 6.3103 3.4007 0.9131 8 6 6.2979 3.6436 -0.5974 9 7 4.2207 0.0266 -0.0052 10 6 3.6355 -1.1540 0.0005 11 6 2.2248 -1.2156 0.0062 12 6 1.5515 -2.4573 0.0120 13 1 0.5711 -2.5421 -0.4332 14 6 2.1544 -3.5771 0.5943 15 7 1.7064 -4.7768 0.3234 16 14 3.5990 -3.3605 1.7586 17 1 4.8665 -3.3893 0.9855 18 1 3.4774 -2.0581 2.4615 19 1 3.6016 -4.4621 2.7545 20 1 -0.3633 0.0053 1.0276 21 1 -0.3633 0.8874 -0.5184 22 1 -0.3634 -0.8926 -0.5093 23 1 3.6551 3.1845 -0.0123 24 1 6.1221 1.4391 -0.1760 25 1 5.6704 4.0316 1.5300 26 1 7.2555 3.1032 1.3673 27 1 7.2348 3.5060 -1.1370 28 1 5.6497 4.4345 -0.9749 29 1 4.2248 -2.0590 0.0004 30 1 0.9161 -4.8862 -0.2284 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260334660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = 64.835744 kcal Electronic energy + Delta-G solvation = -14304.172689 eV Core-core repulsion = 11906.953637 eV Total energy + Delta-G solvation = -2397.219053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54261 -37.33426 -34.43355 -33.14856 -32.50528 -30.04429 -27.85395 -24.51649 -22.50452 -22.18297 -21.78462 -20.04099 -18.59193 -17.17595 -16.35792 -14.97708 -14.65411 -14.13040 -14.08852 -13.54618 -13.08139 -12.89519 -12.32262 -12.26405 -11.86249 -11.45762 -11.42057 -11.20827 -10.83602 -10.47361 -10.22066 -10.11072 -9.61342 -9.31574 -9.19784 -8.71947 -7.90268 -7.48306 -7.07995 -4.48519 2.37520 2.50173 3.14098 3.28020 3.45333 3.71243 3.93036 4.14918 4.60520 5.07478 5.19346 5.22526 5.39290 5.48684 5.70324 5.75559 5.85607 6.00257 6.23320 6.29836 6.39426 6.42523 6.54237 6.81895 7.04407 7.17856 7.46563 7.86423 8.00922 8.10764 8.27272 8.51910 8.78498 9.61249 9.95575 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.034866 B = 0.009014 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.887985 B = 3105.666142 C = 3715.198572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.095 3.905 3 N -0.537 5.537 4 C 0.439 3.561 5 N -0.692 5.692 6 C 0.127 3.873 7 C -0.210 4.210 8 C -0.205 4.205 9 N -0.529 5.529 10 C 0.033 3.967 11 C -0.030 4.030 12 C -0.496 4.496 13 H 0.084 0.916 14 C 0.041 3.959 15 N -0.815 5.815 16 Si 1.066 2.934 17 H -0.272 1.272 18 H -0.268 1.268 19 H -0.284 1.284 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.400 0.600 24 H 0.136 0.864 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 8.434 0.561 9.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 N -0.256 5.256 4 C 0.086 3.914 5 N -0.331 5.331 6 C 0.018 3.982 7 C -0.249 4.249 8 C -0.244 4.244 9 N -0.249 5.249 10 C -0.134 4.134 11 C -0.038 4.038 12 C -0.527 4.527 13 H 0.101 0.899 14 C -0.179 4.179 15 N -0.438 5.438 16 Si 0.892 3.108 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.211 1.211 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.235 0.765 24 H 0.154 0.846 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.821 8.280 1.417 10.220 hybrid contribution -1.773 0.366 -0.996 2.066 sum 4.048 8.646 0.421 9.556 Atomic orbital electron populations 1.20313 0.89830 1.01477 1.01519 1.21276 0.95543 0.87090 1.01700 1.66977 1.07669 1.32162 1.18812 1.18405 0.84781 0.85692 1.02548 1.42586 1.02903 1.03742 1.83846 1.21267 0.81013 0.95051 1.00860 1.23440 1.03157 1.05535 0.92817 1.23365 1.03036 1.01753 0.96231 1.67159 1.41398 0.98273 1.18050 1.22831 0.92287 0.93612 1.04719 1.19047 0.93451 0.95046 0.96241 1.20359 1.05202 0.93200 1.33913 0.89850 1.27144 1.02283 0.91400 0.97030 1.70561 1.20085 1.23699 1.29427 0.83688 0.74256 0.76666 0.76179 1.19875 1.19316 1.21061 0.91920 0.92651 0.91095 0.76474 0.84646 0.89179 0.88738 0.88606 0.89164 0.83655 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 9.86 36.00 0.35 -1.11 16 2 C 0.10 2.28 6.90 -81.49 -0.56 1.72 16 3 N -0.54 -12.73 10.36 -9.61 -0.10 -12.83 16 4 C 0.44 10.16 8.41 -322.74 -2.71 7.45 16 5 N -0.69 -12.99 5.70 -55.79 -0.32 -13.30 16 6 C 0.13 2.04 6.44 -67.93 -0.44 1.60 16 7 C -0.21 -2.72 10.46 -26.73 -0.28 -3.00 16 8 C -0.20 -2.55 10.45 -26.73 -0.28 -2.83 16 9 N -0.53 -12.79 9.02 -13.36 -0.12 -12.91 16 10 C 0.03 0.83 8.55 -16.45 -0.14 0.69 16 11 C -0.03 -0.76 5.16 -106.51 -0.55 -1.31 16 12 C -0.50 -12.70 8.87 -37.82 -0.34 -13.04 16 13 H 0.08 2.14 6.61 -52.48 -0.35 1.80 16 14 C 0.04 1.03 5.44 -17.34 -0.09 0.94 16 15 N -0.81 -21.08 13.66 55.54 0.76 -20.32 16 16 Si 1.07 23.84 24.89 -169.99 -4.23 19.61 16 17 H -0.27 -5.77 6.44 56.52 0.36 -5.41 16 18 H -0.27 -6.19 6.99 56.52 0.39 -5.80 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.07 1.38 6.42 -51.93 -0.33 1.05 16 23 H 0.40 6.77 8.93 -40.82 -0.36 6.41 16 24 H 0.14 2.36 7.26 -51.93 -0.38 1.99 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.15 3.50 4.42 -52.49 -0.23 3.27 16 30 H 0.29 7.18 8.73 -40.82 -0.36 6.82 16 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -27.81 255.93 -8.58 -36.39 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.39 Total: 8.39 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -5.04 Total: -8.89 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.22 Total: -59.36 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.23 Total: 19.61 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.81 -8.58 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.224 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds