Wall clock time and date at job start Mon Mar 30 2020 03:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31802 * 120.56843 * 2 1 4 4 C 1.32771 * 121.01556 * 180.28469 * 3 2 1 5 5 N 1.37931 * 118.91428 * 179.69592 * 4 3 2 6 6 C 1.46505 * 119.99875 * 179.97438 * 5 4 3 7 7 C 1.53001 * 117.49517 * 223.62129 * 6 5 4 8 8 C 1.52997 * 117.49682 * 155.00232 * 6 5 4 9 9 N 1.32800 * 122.16760 * 359.67628 * 4 3 2 10 10 C 1.31773 * 121.01589 * 0.02562 * 9 4 3 11 11 C 1.41175 * 120.56289 * 179.70597 * 2 1 3 12 12 C 1.41249 * 120.96939 * 0.02894 * 11 2 1 13 13 H 1.08008 * 120.00138 * 28.42176 * 12 11 2 14 14 C 1.39879 * 120.00254 * 208.42297 * 12 11 2 15 15 N 1.30893 * 120.00676 * 196.79663 * 14 12 11 16 16 Si 1.86802 * 119.99667 * 16.79778 * 14 12 11 17 17 H 1.48499 * 109.47166 * 269.99969 * 16 14 12 18 18 H 1.48500 * 109.47214 * 29.99883 * 16 14 12 19 19 H 1.48499 * 109.47199 * 150.00347 * 16 14 12 20 20 H 1.09000 * 109.47178 * 270.29370 * 1 2 3 21 21 H 1.09002 * 109.47087 * 30.29197 * 1 2 3 22 22 H 1.09001 * 109.47209 * 150.28927 * 1 2 3 23 23 H 0.96996 * 120.00246 * 359.97438 * 5 4 3 24 24 H 1.08990 * 115.55007 * 9.33137 * 6 5 4 25 25 H 1.08995 * 117.50082 * 0.02562 * 7 6 5 26 26 H 1.09001 * 117.49308 * 145.02109 * 7 6 5 27 27 H 1.08996 * 117.49869 * 214.97995 * 8 6 5 28 28 H 1.09002 * 117.49874 * 359.97438 * 8 6 5 29 29 H 1.07997 * 120.56073 * 179.97438 * 10 9 4 30 30 H 0.97007 * 119.99265 * 355.47468 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1773 1.1348 0.0000 4 6 3.5049 1.1452 -0.0057 5 7 4.1623 2.3578 -0.0118 6 6 5.6269 2.3969 -0.0176 7 6 6.3103 3.4007 0.9131 8 6 6.2979 3.6436 -0.5974 9 7 4.2207 0.0266 -0.0052 10 6 3.6355 -1.1540 0.0005 11 6 2.2248 -1.2156 0.0062 12 6 1.5515 -2.4573 0.0120 13 1 0.5711 -2.5421 -0.4332 14 6 2.1544 -3.5771 0.5943 15 7 1.7064 -4.7768 0.3234 16 14 3.5990 -3.3605 1.7586 17 1 4.8665 -3.3893 0.9855 18 1 3.4774 -2.0581 2.4615 19 1 3.6016 -4.4621 2.7545 20 1 -0.3633 0.0053 1.0276 21 1 -0.3633 0.8874 -0.5184 22 1 -0.3634 -0.8926 -0.5093 23 1 3.6551 3.1845 -0.0123 24 1 6.1221 1.4391 -0.1760 25 1 5.6704 4.0316 1.5300 26 1 7.2555 3.1032 1.3673 27 1 7.2348 3.5060 -1.1370 28 1 5.6497 4.4345 -0.9749 29 1 4.2248 -2.0590 0.0004 30 1 0.9161 -4.8862 -0.2284 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260334660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:19 Heat of formation + Delta-G solvation = 48.774794 kcal Electronic energy + Delta-G solvation = -14304.869144 eV Core-core repulsion = 11906.953637 eV Total energy + Delta-G solvation = -2397.915508 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36552 -38.62156 -36.21846 -34.93852 -34.22928 -31.75260 -29.59202 -26.34815 -24.27555 -23.39825 -23.18345 -21.59587 -20.47219 -18.87537 -17.99589 -16.48070 -16.30459 -15.94043 -15.47065 -15.36850 -14.90458 -14.58922 -13.90420 -13.63640 -13.52916 -13.08404 -12.83535 -12.51203 -12.35470 -12.29984 -11.87997 -11.44829 -11.32162 -11.14160 -11.03283 -10.38354 -9.77813 -9.34513 -8.81210 -6.41103 0.48063 0.62743 1.34567 1.48604 1.68560 2.11935 2.20876 2.65712 3.07723 3.46086 3.58765 3.91076 3.99294 4.12101 4.21241 4.25768 4.62026 4.79748 4.80385 4.83667 4.89635 5.04569 5.15974 5.26738 5.27223 5.43699 5.54299 6.06822 6.17413 6.30543 6.56681 6.68937 6.94595 7.79535 8.02832 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.034866 B = 0.009014 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.887985 B = 3105.666142 C = 3715.198572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.095 3.905 3 N -0.548 5.548 4 C 0.444 3.556 5 N -0.682 5.682 6 C 0.081 3.919 7 C -0.191 4.191 8 C -0.176 4.176 9 N -0.543 5.543 10 C 0.026 3.974 11 C -0.056 4.056 12 C -0.514 4.514 13 H 0.071 0.929 14 C 0.015 3.985 15 N -0.838 5.838 16 Si 1.093 2.907 17 H -0.256 1.256 18 H -0.281 1.281 19 H -0.271 1.271 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.409 0.591 24 H 0.117 0.883 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 10.545 0.815 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 N -0.269 5.269 4 C 0.089 3.911 5 N -0.322 5.322 6 C -0.026 4.026 7 C -0.231 4.231 8 C -0.215 4.215 9 N -0.264 5.264 10 C -0.140 4.140 11 C -0.064 4.064 12 C -0.545 4.545 13 H 0.089 0.911 14 C -0.200 4.200 15 N -0.463 5.463 16 Si 0.917 3.083 17 H -0.182 1.182 18 H -0.207 1.207 19 H -0.197 1.197 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.246 0.754 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.166 0.834 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.994 10.416 1.660 12.656 hybrid contribution -2.072 -0.028 -1.108 2.350 sum 4.921 10.388 0.552 11.508 Atomic orbital electron populations 1.20367 0.87273 1.02430 1.02676 1.21941 0.97473 0.86814 0.99420 1.67168 1.07925 1.31797 1.19990 1.19001 0.85052 0.86927 1.00107 1.42736 1.04227 1.02536 1.82674 1.21445 0.79440 0.96118 1.05584 1.23491 1.03060 1.03133 0.93389 1.23441 1.03018 0.98910 0.96087 1.67254 1.41361 0.98335 1.19419 1.22983 0.92407 0.94236 1.04390 1.19210 0.93895 0.95539 0.97762 1.20293 1.05101 0.93830 1.35277 0.91051 1.27878 1.03535 0.91112 0.97444 1.70606 1.20768 1.24036 1.30841 0.83305 0.73425 0.76147 0.75458 1.18203 1.20732 1.19742 0.90528 0.90557 0.91197 0.75388 0.86528 0.88634 0.87205 0.86704 0.88038 0.83350 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.70 9.86 71.23 0.70 -2.00 16 2 C 0.10 4.49 6.90 43.28 0.30 4.79 16 3 N -0.55 -25.32 10.36 -184.32 -1.91 -27.23 16 4 C 0.44 20.03 8.41 261.46 2.20 22.23 16 5 N -0.68 -24.27 5.70 -330.41 -1.88 -26.16 16 6 C 0.08 2.43 6.44 44.99 0.29 2.72 16 7 C -0.19 -4.29 10.46 30.59 0.32 -3.97 16 8 C -0.18 -3.71 10.45 30.59 0.32 -3.39 16 9 N -0.54 -25.92 9.02 -196.18 -1.77 -27.69 16 10 C 0.03 1.31 8.55 85.43 0.73 2.04 16 11 C -0.06 -2.85 5.16 -21.09 -0.11 -2.96 16 12 C -0.51 -26.78 8.87 23.41 0.21 -26.57 16 13 H 0.07 3.78 6.61 -2.91 -0.02 3.76 16 14 C 0.02 0.78 5.44 85.23 0.46 1.24 16 15 N -0.84 -44.10 13.66 21.82 0.30 -43.80 16 16 Si 1.09 48.22 24.89 68.60 1.71 49.92 16 17 H -0.26 -10.53 6.44 99.48 0.64 -9.89 16 18 H -0.28 -12.92 6.99 99.48 0.69 -12.23 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 21 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.07 2.70 6.42 -2.39 -0.02 2.69 16 23 H 0.41 12.86 8.93 -92.71 -0.83 12.04 16 24 H 0.12 3.94 7.26 -2.39 -0.02 3.92 16 25 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.15 7.14 4.42 -2.91 -0.01 7.13 16 30 H 0.28 14.56 8.73 -92.70 -0.81 13.75 16 Total: -1.00 -58.91 255.93 2.09 -56.81 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.22 Total: 24.01 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 5.42 Total: -5.87 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.26 Total: -124.88 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.71 Total: 49.92 kcal Total: -58.91 2.09 -56.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260334660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.589 kcal (2) G-P(sol) polarization free energy of solvation -58.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds