Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47226 * 2 1 4 4 C 1.50704 * 109.46866 * 240.00089 * 2 1 3 5 5 H 1.08002 * 119.99681 * 239.99615 * 4 2 1 6 6 C 1.37869 * 120.00120 * 60.00184 * 4 2 1 7 7 N 1.31518 * 120.00289 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47055 * 89.99934 * 8 6 4 10 10 H 1.48501 * 109.47047 * 209.99535 * 8 6 4 11 11 H 1.48494 * 109.46905 * 329.99462 * 8 6 4 12 12 C 1.50694 * 109.47357 * 120.00109 * 2 1 3 13 13 C 1.38443 * 120.58643 * 59.97328 * 12 2 1 14 14 N 1.31864 * 120.80730 * 180.02562 * 13 12 2 15 15 C 1.32062 * 121.89637 * 0.02562 * 14 13 12 16 16 C 1.37757 * 120.46608 * 359.97438 * 15 14 13 17 17 C 1.38042 * 120.58232 * 240.00124 * 12 2 1 18 18 C 1.50768 * 133.85865 * 359.94702 * 17 12 2 19 19 O 1.44020 * 105.95336 * 197.55165 * 18 17 12 20 20 C 1.43996 * 105.02402 * 331.78129 * 19 18 17 21 21 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46987 * 299.99714 * 1 2 3 23 23 H 1.09003 * 109.47360 * 60.00013 * 1 2 3 24 24 H 0.96998 * 119.99892 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.59262 * 0.04894 * 13 12 2 26 26 H 1.08000 * 119.76367 * 180.02562 * 15 14 13 27 27 H 1.08996 * 110.15569 * 78.43024 * 18 17 12 28 28 H 1.09001 * 110.15296 * 316.67064 * 18 17 12 29 29 H 1.09001 * 110.14009 * 147.37418 * 20 19 18 30 30 H 1.08999 * 110.14489 * 269.03888 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3447 -2.1616 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 6 2.0324 -0.7104 1.2304 13 6 1.7050 -2.0355 1.4618 14 7 2.1417 -2.6612 2.5372 15 6 2.9027 -2.0599 3.4336 16 6 3.2681 -0.7420 3.2684 17 6 2.8267 -0.0511 2.1469 18 6 3.3774 1.3496 2.2355 19 8 4.4532 1.2923 3.1913 20 6 4.1049 0.2151 4.0812 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.7082 1.1608 -3.4844 25 1 1.0845 -2.5633 0.7526 26 1 3.2415 -2.6056 4.3018 27 1 2.6043 2.0359 2.5809 28 1 3.7551 1.6668 1.2635 29 1 5.0062 -0.2835 4.4377 30 1 3.5286 0.5962 4.9243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260339592.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = -29.935555 kcal Electronic energy + Delta-G solvation = -14613.422996 eV Core-core repulsion = 12179.801600 eV Total energy + Delta-G solvation = -2433.621396 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.05322 -39.17981 -36.68786 -33.86060 -33.02561 -30.82421 -28.90939 -27.25733 -26.30912 -24.03944 -23.15641 -21.18740 -18.58664 -17.89213 -17.69785 -17.17296 -16.76596 -16.22570 -15.26147 -15.10062 -14.70725 -14.42233 -14.09687 -13.67880 -13.45684 -13.24602 -12.99544 -12.84165 -12.78623 -12.24933 -12.18289 -11.67420 -11.32638 -11.15056 -10.62281 -10.33575 -10.02049 -9.65174 -8.13994 -6.28086 0.11760 0.32110 1.40215 1.42255 1.51328 2.40401 2.81554 2.88732 3.14674 3.24051 3.50238 3.69269 3.99039 4.29282 4.36407 4.40200 4.53731 4.61892 4.72076 4.80751 4.88384 5.05205 5.07572 5.17290 5.25385 5.54261 5.61209 5.78476 5.84909 6.01097 6.27245 6.78589 7.01759 7.40376 8.90402 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034050 B = 0.008937 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.118040 B = 3132.443493 C = 3373.935017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.078 3.922 3 H 0.015 0.985 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.076 4.076 13 C 0.096 3.904 14 N -0.495 5.495 15 C 0.097 3.903 16 C -0.187 4.187 17 C -0.121 4.121 18 C 0.097 3.903 19 O -0.376 6.376 20 C 0.100 3.900 21 H 0.034 0.966 22 H 0.025 0.975 23 H 0.064 0.936 24 H 0.264 0.736 25 H 0.153 0.847 26 H 0.191 0.809 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -1.348 11.171 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 H 0.033 0.967 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.199 1.199 12 C -0.078 4.078 13 C -0.062 4.062 14 N -0.204 5.204 15 C -0.058 4.058 16 C -0.189 4.189 17 C -0.129 4.129 18 C 0.021 3.979 19 O -0.295 6.295 20 C 0.024 3.976 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.171 0.829 26 H 0.208 0.792 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.337 -1.969 11.181 11.833 hybrid contribution 0.087 0.446 -1.446 1.516 sum 3.424 -1.523 9.735 10.431 Atomic orbital electron populations 1.21648 0.96872 0.99565 1.00017 1.17672 0.93394 0.94303 0.88746 0.96669 1.21284 1.31545 1.12451 0.91074 0.93419 1.25622 0.95103 0.95586 1.01520 1.69980 1.37124 1.23687 1.24214 0.85657 0.78783 0.78505 0.79352 1.19861 1.20714 1.19913 1.20799 0.95688 0.95323 0.95998 1.22649 0.97768 0.91522 0.94211 1.67791 1.10954 1.38560 1.03056 1.22418 0.94465 0.90463 0.98491 1.22350 1.01864 0.97123 0.97584 1.21414 0.97915 0.97931 0.95624 1.21631 0.89875 0.92303 0.94111 1.89052 1.43866 1.53419 1.43128 1.21885 0.99481 0.84767 0.91477 0.94698 0.95626 0.91686 0.92705 0.82925 0.79187 0.88947 0.89110 0.85846 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.79 71.98 0.63 -5.14 16 2 C 0.08 3.81 2.50 -12.29 -0.03 3.78 16 3 H 0.02 0.80 7.36 -2.39 -0.02 0.78 16 4 C -0.53 -28.18 8.26 25.60 0.21 -27.97 16 5 H 0.05 2.59 7.61 -2.91 -0.02 2.57 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -50.65 11.32 21.44 0.24 -50.40 16 8 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 C -0.08 -3.25 4.73 -19.86 -0.09 -3.34 16 13 C 0.10 3.89 9.94 84.74 0.84 4.73 16 14 N -0.50 -18.07 10.36 -195.88 -2.03 -20.09 16 15 C 0.10 2.91 11.19 84.54 0.95 3.85 16 16 C -0.19 -5.73 6.37 -19.75 -0.13 -5.85 16 17 C -0.12 -4.51 6.17 -19.72 -0.12 -4.63 16 18 C 0.10 3.24 7.06 71.26 0.50 3.74 16 19 O -0.38 -11.45 11.72 -148.98 -1.75 -13.20 16 20 C 0.10 2.37 7.63 71.30 0.54 2.91 16 21 H 0.03 1.55 7.43 -2.39 -0.02 1.53 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 24 H 0.26 13.96 8.31 -92.71 -0.77 13.18 16 25 H 0.15 6.25 7.61 -2.91 -0.02 6.23 16 26 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.09 3.26 8.01 -2.39 -0.02 3.24 16 29 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -60.48 255.22 3.39 -57.10 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.14 Total: 8.02 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.76 Total: -26.34 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.79 Total: -70.50 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.75 Total: -13.20 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -60.48 3.39 -57.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339592.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.164 kcal (2) G-P(sol) polarization free energy of solvation -60.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds