Wall clock time and date at job start Mon Mar 30 2020 02:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47334 * 2 1 4 4 C 1.50699 * 109.47011 * 119.99854 * 2 1 3 5 5 H 1.07998 * 120.00220 * 120.00144 * 4 2 1 6 6 C 1.37879 * 120.00309 * 299.99742 * 4 2 1 7 7 N 1.31509 * 120.00705 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47428 * 89.99784 * 8 6 4 10 10 H 1.48493 * 109.47254 * 210.00158 * 8 6 4 11 11 H 1.48503 * 109.47293 * 329.99994 * 8 6 4 12 12 C 1.50705 * 109.47310 * 239.99456 * 2 1 3 13 13 C 1.38446 * 120.58218 * 300.02709 * 12 2 1 14 14 N 1.31865 * 120.80648 * 179.97438 * 13 12 2 15 15 C 1.32067 * 121.89282 * 0.02562 * 14 13 12 16 16 C 1.37631 * 120.51432 * 0.02562 * 15 14 13 17 17 C 1.38039 * 120.58449 * 119.99683 * 12 2 1 18 18 C 1.50772 * 133.85750 * 359.97438 * 17 12 2 19 19 O 1.44008 * 105.95189 * 162.49990 * 18 17 12 20 20 C 1.43992 * 105.02861 * 28.22019 * 19 18 17 21 21 H 1.09003 * 109.47285 * 300.00541 * 1 2 3 22 22 H 1.08999 * 109.47164 * 60.00644 * 1 2 3 23 23 H 1.09002 * 109.47004 * 180.02562 * 1 2 3 24 24 H 0.96993 * 120.00727 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.59468 * 359.95443 * 13 12 2 26 26 H 1.07995 * 119.76927 * 179.97438 * 15 14 13 27 27 H 1.08999 * 110.15488 * 43.37380 * 18 17 12 28 28 H 1.08997 * 110.21071 * 281.65221 * 18 17 12 29 29 H 1.09002 * 110.14673 * 90.89276 * 20 19 18 30 30 H 1.08997 * 110.14715 * 212.55730 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9953 3.9066 11 1 0.8470 2.1766 1.4919 12 6 2.0324 -0.7105 -1.2304 13 6 1.7049 -2.0357 -1.4616 14 7 2.1416 -2.6616 -2.5370 15 6 2.9034 -2.0606 -3.4330 16 6 3.2699 -0.7443 -3.2685 17 6 2.8266 -0.0514 -2.1470 18 6 3.3761 1.3498 -2.2365 19 8 4.4516 1.2929 -3.1924 20 6 4.1041 0.2150 -4.0817 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9034 -0.5277 4.4376 25 1 1.0844 -2.5633 -0.7524 26 1 3.2422 -2.6062 -4.3012 27 1 3.7536 1.6680 -1.2648 28 1 2.6028 2.0361 -2.5816 29 1 3.5263 0.5948 -4.9243 30 1 5.0058 -0.2824 -4.4391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260339595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:40 Heat of formation + Delta-G solvation = -3.775784 kcal Electronic energy + Delta-G solvation = -14667.390461 eV Core-core repulsion = 12234.903438 eV Total energy + Delta-G solvation = -2432.487023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77417 -37.92795 -35.12214 -32.18875 -31.70754 -29.83618 -27.75142 -25.31105 -24.97098 -22.63472 -21.85970 -19.57241 -17.22564 -16.46792 -16.31355 -15.96235 -15.27947 -14.82897 -13.99495 -13.52477 -13.28144 -12.96722 -12.92410 -12.37785 -12.31602 -12.08200 -11.78433 -11.23386 -11.09891 -10.45671 -10.30003 -10.14864 -9.57813 -9.43121 -8.99901 -8.73228 -8.68388 -8.27225 -6.18538 -4.20553 1.46019 1.67406 3.18810 3.28473 3.32003 4.03916 4.15722 4.29636 4.46468 4.73218 4.93313 5.11564 5.24347 5.40636 5.50066 5.60457 5.67897 5.87382 5.94332 6.03840 6.22204 6.32624 6.39076 6.47317 6.59812 6.80208 6.82841 7.15361 7.28005 7.56631 8.33601 8.40563 8.83845 9.40878 10.93939 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.009721 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.050534 B = 2879.738638 C = 3235.189305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 H 0.038 0.962 4 C -0.516 4.516 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.266 1.266 12 C -0.047 4.047 13 C 0.115 3.885 14 N -0.483 5.483 15 C 0.096 3.904 16 C -0.194 4.194 17 C -0.101 4.101 18 C 0.092 3.908 19 O -0.364 6.364 20 C 0.101 3.899 21 H 0.045 0.955 22 H 0.030 0.970 23 H 0.057 0.943 24 H 0.266 0.734 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 2.986 -12.521 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.023 3.977 3 H 0.056 0.944 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.191 1.191 12 C -0.049 4.049 13 C -0.043 4.043 14 N -0.191 5.191 15 C -0.059 4.059 16 C -0.197 4.197 17 C -0.109 4.109 18 C 0.016 3.984 19 O -0.282 6.282 20 C 0.024 3.976 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.182 0.818 26 H 0.166 0.834 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.336 2.239 -12.469 12.673 hybrid contribution -0.529 1.462 0.477 1.626 sum -0.865 3.700 -11.992 12.580 Atomic orbital electron populations 1.22179 0.97924 1.01250 0.98916 1.18296 0.92210 0.96195 0.91019 0.94447 1.20871 1.32742 1.13855 0.87869 0.90525 1.24979 0.95559 0.96596 0.95697 1.69873 1.44996 1.40162 0.98023 0.86849 0.80643 0.83641 0.77091 1.20411 1.22325 1.19146 1.20599 0.94406 0.94774 0.95161 1.22827 0.96743 0.91428 0.93276 1.67788 1.10235 1.38097 1.02981 1.21710 0.95802 0.90198 0.98189 1.21940 1.02601 0.96896 0.98222 1.21149 0.98057 0.96641 0.95075 1.21695 0.89510 0.92849 0.94344 1.89069 1.43938 1.52385 1.42850 1.21568 0.98289 0.85897 0.91890 0.93650 0.95054 0.92436 0.92386 0.81821 0.83436 0.87648 0.90493 0.90935 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.49 37.16 0.32 -2.65 16 2 C 0.04 0.94 2.09 -92.92 -0.19 0.75 16 3 H 0.04 0.84 6.42 -51.93 -0.33 0.50 16 4 C -0.52 -13.78 8.84 -34.44 -0.30 -14.08 16 5 H 0.08 2.26 7.86 -52.49 -0.41 1.85 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 8 Si 0.89 20.95 24.37 -169.99 -4.14 16.81 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.30 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 12 C -0.05 -0.96 4.73 -104.62 -0.49 -1.46 16 13 C 0.12 2.28 9.94 -17.46 -0.17 2.10 16 14 N -0.48 -8.96 10.36 -13.29 -0.14 -9.10 16 15 C 0.10 1.54 11.18 -17.67 -0.20 1.34 16 16 C -0.19 -3.13 6.38 -104.43 -0.67 -3.79 16 17 C -0.10 -1.85 6.17 -104.35 -0.64 -2.49 16 18 C 0.09 1.49 7.06 36.04 0.25 1.74 16 19 O -0.36 -5.76 11.72 -35.23 -0.41 -6.17 16 20 C 0.10 1.33 7.62 36.11 0.28 1.61 16 21 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.16 3.18 7.61 -52.49 -0.40 2.78 16 26 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 27 H 0.11 1.74 8.01 -51.93 -0.42 1.32 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 248.39 15.07 3.74 3.74 Total: -1.00 -29.83 248.39 -5.51 -35.34 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.41 Total: 0.03 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.93 Total: -14.98 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.64 Total: -34.77 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.41 Total: -6.17 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.81 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.83 -5.51 -35.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260339595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.565 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds