Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35898 * 116.99824 * 2 1 4 4 C 1.38783 * 119.98191 * 359.97438 * 3 2 1 5 5 C 1.38172 * 119.76661 * 180.02562 * 4 3 2 6 6 C 1.37901 * 120.29502 * 359.97438 * 5 4 3 7 7 C 1.39689 * 120.39212 * 0.02562 * 6 5 4 8 8 C 1.38534 * 119.06774 * 0.02562 * 7 6 5 9 9 C 1.51213 * 108.56385 * 180.02562 * 8 7 6 10 10 C 1.53747 * 104.52672 * 359.97438 * 9 8 7 11 11 H 1.09003 * 110.30401 * 119.02211 * 10 9 8 12 12 C 1.50702 * 110.30588 * 241.07213 * 10 9 8 13 13 H 1.08002 * 119.99441 * 358.63527 * 12 10 9 14 14 C 1.37871 * 120.00075 * 178.63102 * 12 10 9 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 10 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 N 1.39789 * 129.25705 * 180.08435 * 7 6 5 21 21 H 1.08998 * 109.47601 * 299.99871 * 1 2 3 22 22 H 1.09005 * 109.47272 * 60.00677 * 1 2 3 23 23 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.11433 * 359.97438 * 4 3 2 25 25 H 1.07996 * 119.85289 * 179.97438 * 5 4 3 26 26 H 1.07993 * 119.80260 * 179.97438 * 6 5 4 27 27 H 1.08995 * 110.42487 * 241.23792 * 9 8 7 28 28 H 1.09003 * 110.52593 * 118.81609 * 9 8 7 29 29 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 30 30 H 0.97005 * 125.07187 * 359.96490 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2896 2.3746 -0.0005 5 6 1.9215 3.6033 -0.0011 6 6 3.2985 3.6775 -0.0005 7 6 4.0689 2.5123 0.0000 8 6 3.4301 1.2830 -0.0005 9 6 4.4801 0.1948 0.0009 10 6 5.8189 0.9508 0.0016 11 1 6.3914 0.7053 0.8962 12 6 6.6115 0.6120 -1.2345 13 1 6.2188 -0.0944 -1.9510 14 6 7.8378 1.2038 -1.4509 15 7 8.3157 2.0644 -0.5788 16 14 8.8236 0.7782 -2.9795 17 1 9.7056 -0.3815 -2.6926 18 1 7.8959 0.4326 -4.0864 19 1 9.6528 1.9449 -3.3745 20 7 5.4597 2.3714 0.0022 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.2110 2.3198 -0.0014 25 1 1.3343 4.5097 -0.0019 26 1 3.7841 4.6421 -0.0014 27 1 4.3916 -0.4203 -0.8945 28 1 4.3904 -0.4217 0.8953 29 1 7.8036 2.2858 0.2148 30 1 6.0943 3.1051 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437760.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = -11.446764 kcal Electronic energy + Delta-G solvation = -14528.427472 eV Core-core repulsion = 12095.607810 eV Total energy + Delta-G solvation = -2432.819662 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.91684 -38.01324 -35.35368 -32.53434 -30.78757 -28.62188 -27.75648 -26.82912 -24.49821 -21.57705 -20.75378 -20.50942 -17.78474 -17.15716 -15.84996 -15.40085 -15.05691 -14.61916 -14.20555 -13.83847 -13.81757 -12.61463 -12.34796 -12.01950 -11.84861 -11.69917 -11.18558 -11.10677 -10.90228 -10.80224 -10.43883 -10.23891 -10.09666 -9.53804 -8.70752 -8.59337 -7.58806 -6.59371 -6.35333 -4.31096 2.07667 2.27016 3.36031 3.39479 3.55852 3.68162 4.37862 4.46043 4.51216 5.20848 5.29853 5.32890 5.45146 5.47609 5.60070 5.79421 5.99488 6.08696 6.23766 6.27396 6.40312 6.80716 6.86603 7.07057 7.09181 7.22534 7.32603 7.85321 7.95103 8.13469 8.29860 8.65198 8.91498 9.43293 10.80979 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041009 B = 0.008112 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.606442 B = 3450.681842 C = 3822.768065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.177 3.823 4 C -0.288 4.288 5 C -0.040 4.040 6 C -0.238 4.238 7 C 0.251 3.749 8 C -0.212 4.212 9 C -0.055 4.055 10 C 0.243 3.757 11 H 0.032 0.968 12 C -0.600 4.600 13 H 0.059 0.941 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 1.074 2.926 17 H -0.285 1.285 18 H -0.287 1.287 19 H -0.283 1.283 20 N -0.714 5.714 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 -0.132 1.278 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.131 3.869 4 C -0.309 4.309 5 C -0.059 4.059 6 C -0.261 4.261 7 C 0.139 3.861 8 C -0.218 4.218 9 C -0.092 4.092 10 C 0.142 3.858 11 H 0.050 0.950 12 C -0.639 4.639 13 H 0.077 0.923 14 C -0.178 4.178 15 N -0.543 5.543 16 Si 0.901 3.099 17 H -0.211 1.211 18 H -0.213 1.213 19 H -0.209 1.209 20 N -0.340 5.340 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.231 -0.147 0.500 10.244 hybrid contribution -1.484 0.260 0.740 1.679 sum -11.715 0.112 1.240 11.781 Atomic orbital electron populations 1.22924 0.79527 1.02962 1.00969 1.86057 1.20413 1.27871 1.88885 1.18205 0.90112 0.83577 0.94977 1.20605 0.98622 0.92129 1.19533 1.20315 0.93400 0.96349 0.95882 1.20189 0.93374 0.96093 1.16490 1.18386 0.85869 0.92797 0.89016 1.19133 0.90524 0.95922 1.16249 1.20859 0.91738 0.95653 1.00969 1.19301 0.92019 0.77251 0.97251 0.95028 1.22436 1.04939 1.28687 1.07821 0.92283 1.25978 0.95831 0.93257 1.02777 1.70879 1.40970 1.31631 1.10855 0.83473 0.75540 0.76380 0.74502 1.21145 1.21297 1.20901 1.46391 1.01338 1.10015 1.76267 0.93127 0.93068 0.89021 0.86591 0.86787 0.87235 0.90890 0.92440 0.92124 0.75699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.63 10.46 -19.42 -0.20 -5.83 16 3 C 0.18 3.44 6.68 -39.24 -0.26 3.17 16 4 C -0.29 -4.87 9.04 -39.40 -0.36 -5.23 16 5 C -0.04 -0.68 10.01 -39.73 -0.40 -1.08 16 6 C -0.24 -4.55 10.07 -39.16 -0.39 -4.94 16 7 C 0.25 5.57 7.03 -83.58 -0.59 4.98 16 8 C -0.21 -4.68 6.19 -104.12 -0.64 -5.32 16 9 C -0.05 -1.25 6.53 -27.24 -0.18 -1.43 16 10 C 0.24 6.15 3.08 -68.67 -0.21 5.94 16 11 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 12 C -0.60 -16.56 8.77 -34.44 -0.30 -16.86 16 13 H 0.06 1.64 7.36 -52.49 -0.39 1.25 16 14 C 0.03 0.74 5.41 -17.82 -0.10 0.64 16 15 N -0.91 -26.00 13.39 55.43 0.74 -25.26 16 16 Si 1.07 24.62 29.90 -169.99 -5.08 19.53 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.71 -17.07 5.77 -52.75 -0.30 -17.38 16 21 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 22 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16 25 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 27 H 0.07 1.70 7.42 -51.93 -0.39 1.32 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.27 7.50 5.87 -40.82 -0.24 7.26 16 30 H 0.40 9.65 7.47 -40.82 -0.30 9.34 16 LS Contribution 253.59 15.07 3.82 3.82 Total: -1.00 -29.97 253.59 -6.81 -36.78 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.34 Total: 7.07 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.44 Total: -18.74 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.44 Total: -42.64 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.20 Total: -5.83 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.97 -6.81 -36.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437760.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.335 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds