Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35898 * 116.99824 * 2 1 4 4 C 1.38783 * 119.98191 * 359.97438 * 3 2 1 5 5 C 1.38172 * 119.76661 * 180.02562 * 4 3 2 6 6 C 1.37901 * 120.29502 * 359.97438 * 5 4 3 7 7 C 1.39689 * 120.39212 * 0.02562 * 6 5 4 8 8 C 1.38534 * 119.06774 * 0.02562 * 7 6 5 9 9 C 1.51213 * 108.56385 * 180.02562 * 8 7 6 10 10 C 1.53747 * 104.52672 * 359.97438 * 9 8 7 11 11 H 1.09003 * 110.30401 * 119.02211 * 10 9 8 12 12 C 1.50702 * 110.30588 * 241.07213 * 10 9 8 13 13 H 1.08002 * 119.99441 * 358.63527 * 12 10 9 14 14 C 1.37871 * 120.00075 * 178.63102 * 12 10 9 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 10 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 N 1.39789 * 129.25705 * 180.08435 * 7 6 5 21 21 H 1.08998 * 109.47601 * 299.99871 * 1 2 3 22 22 H 1.09005 * 109.47272 * 60.00677 * 1 2 3 23 23 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.11433 * 359.97438 * 4 3 2 25 25 H 1.07996 * 119.85289 * 179.97438 * 5 4 3 26 26 H 1.07993 * 119.80260 * 179.97438 * 6 5 4 27 27 H 1.08995 * 110.42487 * 241.23792 * 9 8 7 28 28 H 1.09003 * 110.52593 * 118.81609 * 9 8 7 29 29 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 30 30 H 0.97005 * 125.07187 * 359.96490 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2896 2.3746 -0.0005 5 6 1.9215 3.6033 -0.0011 6 6 3.2985 3.6775 -0.0005 7 6 4.0689 2.5123 0.0000 8 6 3.4301 1.2830 -0.0005 9 6 4.4801 0.1948 0.0009 10 6 5.8189 0.9508 0.0016 11 1 6.3914 0.7053 0.8962 12 6 6.6115 0.6120 -1.2345 13 1 6.2188 -0.0944 -1.9510 14 6 7.8378 1.2038 -1.4509 15 7 8.3157 2.0644 -0.5788 16 14 8.8236 0.7782 -2.9795 17 1 9.7056 -0.3815 -2.6926 18 1 7.8959 0.4326 -4.0864 19 1 9.6528 1.9449 -3.3745 20 7 5.4597 2.3714 0.0022 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.2110 2.3198 -0.0014 25 1 1.3343 4.5097 -0.0019 26 1 3.7841 4.6421 -0.0014 27 1 4.3916 -0.4203 -0.8945 28 1 4.3904 -0.4217 0.8953 29 1 7.8036 2.2858 0.2148 30 1 6.0943 3.1051 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260437760.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = -30.756606 kcal Electronic energy + Delta-G solvation = -14529.264809 eV Core-core repulsion = 12095.607810 eV Total energy + Delta-G solvation = -2433.656999 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43023 -39.49127 -36.95570 -34.49840 -32.38993 -30.27675 -29.30370 -28.00643 -26.45662 -23.21263 -22.33767 -22.17935 -19.54363 -18.84597 -17.36212 -16.68440 -16.52655 -16.10068 -15.84133 -15.70127 -15.43199 -14.22020 -13.89716 -13.58176 -13.51188 -13.12973 -12.98257 -12.64592 -12.52140 -12.27332 -12.03722 -11.96184 -11.66405 -11.26991 -10.71080 -10.49727 -9.05611 -8.74974 -8.09455 -6.50558 0.59904 0.77799 1.50551 1.57600 1.76979 2.42504 2.50057 2.72882 2.97031 3.25958 3.87207 4.08690 4.21105 4.38899 4.45651 4.47748 4.53211 4.64959 4.65437 4.72308 4.78271 5.09130 5.17860 5.42881 5.61766 5.66673 5.79408 5.88602 6.05111 6.32877 6.50526 6.64588 7.12806 7.32411 8.63657 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041009 B = 0.008112 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.606442 B = 3450.681842 C = 3822.768065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.173 3.827 4 C -0.273 4.273 5 C -0.029 4.029 6 C -0.245 4.245 7 C 0.221 3.779 8 C -0.246 4.246 9 C -0.047 4.047 10 C 0.242 3.758 11 H 0.007 0.993 12 C -0.618 4.618 13 H 0.049 0.951 14 C -0.017 4.017 15 N -0.926 5.926 16 Si 1.119 2.881 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.281 1.281 20 N -0.729 5.729 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.157 0.843 25 H 0.160 0.840 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.260 0.740 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 0.481 0.725 14.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.127 3.873 4 C -0.294 4.294 5 C -0.048 4.048 6 C -0.269 4.269 7 C 0.112 3.888 8 C -0.252 4.252 9 C -0.085 4.085 10 C 0.140 3.860 11 H 0.024 0.976 12 C -0.657 4.657 13 H 0.067 0.933 14 C -0.217 4.217 15 N -0.564 5.564 16 Si 0.941 3.059 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.206 1.206 20 N -0.356 5.356 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.134 0.866 24 H 0.174 0.826 25 H 0.177 0.823 26 H 0.140 0.860 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.843 0.460 -0.036 12.851 hybrid contribution -0.928 0.055 0.969 1.343 sum -13.770 0.515 0.933 13.811 Atomic orbital electron populations 1.23335 0.76401 1.05287 1.02418 1.86035 1.23625 1.27302 1.88524 1.18374 0.89425 0.85238 0.94256 1.21102 1.00519 0.91059 1.16724 1.20845 0.92501 0.98180 0.93266 1.20510 0.94562 0.95556 1.16225 1.18712 0.84988 0.94278 0.90798 1.19278 0.91914 0.95220 1.18772 1.20668 0.91429 0.95866 1.00528 1.19097 0.92829 0.78829 0.95274 0.97580 1.22700 1.05825 1.28757 1.08412 0.93257 1.27309 0.96936 0.92624 1.04839 1.70957 1.41223 1.32827 1.11365 0.82893 0.74728 0.76713 0.71605 1.19461 1.20221 1.20622 1.46005 1.02408 1.08767 1.78450 0.91394 0.91644 0.86587 0.82597 0.82257 0.85971 0.92265 0.91828 0.92925 0.76302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -11.34 10.46 -92.40 -0.97 -12.30 16 3 C 0.17 6.40 6.68 22.49 0.15 6.55 16 4 C -0.27 -8.11 9.04 22.38 0.20 -7.90 16 5 C -0.03 -0.86 10.01 22.17 0.22 -0.64 16 6 C -0.25 -8.95 10.07 22.54 0.23 -8.73 16 7 C 0.22 9.89 7.03 38.29 0.27 10.16 16 8 C -0.25 -10.91 6.19 -19.54 -0.12 -11.03 16 9 C -0.05 -2.26 6.53 30.26 0.20 -2.06 16 10 C 0.24 12.91 3.08 44.49 0.14 13.05 16 11 H 0.01 0.37 8.00 -2.39 -0.02 0.35 16 12 C -0.62 -35.46 8.77 25.60 0.22 -35.23 16 13 H 0.05 2.84 7.36 -2.91 -0.02 2.82 16 14 C -0.02 -0.97 5.41 84.65 0.46 -0.51 16 15 N -0.93 -54.69 13.39 21.45 0.29 -54.41 16 16 Si 1.12 50.05 29.90 68.60 2.05 52.10 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 N -0.73 -36.35 5.77 -320.79 -1.85 -38.20 16 21 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 22 H 0.06 1.14 7.66 -2.38 -0.02 1.13 16 23 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.16 3.36 6.30 -2.91 -0.02 3.34 16 25 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 26 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 27 H 0.06 2.90 7.42 -2.39 -0.02 2.88 16 28 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.26 15.29 5.87 -92.70 -0.54 14.74 16 30 H 0.40 20.05 7.47 -92.70 -0.69 19.36 16 Total: -1.00 -66.70 253.59 3.29 -63.41 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.69 Total: 24.25 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 3.08 Total: -34.84 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -1.56 Total: -92.61 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.97 Total: -12.30 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -66.70 3.29 -63.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437760.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.651 kcal (2) G-P(sol) polarization free energy of solvation -66.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds