Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48201 * 110.83932 * 2 1 4 4 C 1.54600 * 102.48471 * 94.86123 * 3 2 1 5 5 H 1.09007 * 110.74574 * 266.95515 * 4 3 2 6 6 C 1.50694 * 110.74381 * 143.79846 * 4 3 2 7 7 H 1.08002 * 120.00179 * 243.90168 * 6 4 3 8 8 C 1.37879 * 120.00472 * 63.90486 * 6 4 3 9 9 N 1.31514 * 119.99350 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 120.00608 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.51564 * 102.97821 * 25.37285 * 4 3 2 15 15 C 1.38910 * 107.96846 * 343.92193 * 14 4 3 16 16 C 1.39414 * 119.12210 * 179.65531 * 15 14 4 17 17 C 1.37980 * 120.31494 * 0.21791 * 16 15 14 18 18 C 1.38176 * 120.32665 * 359.97438 * 17 16 15 19 19 C 1.38354 * 131.58254 * 163.89151 * 14 4 3 20 20 O 1.35902 * 120.01380 * 0.22243 * 19 14 4 21 21 H 1.09009 * 109.47277 * 300.10292 * 1 2 3 22 22 H 1.08995 * 109.47392 * 60.10079 * 1 2 3 23 23 H 1.09006 * 109.46997 * 180.10484 * 1 2 3 24 24 H 1.09000 * 110.94930 * 336.57226 * 3 2 1 25 25 H 1.08999 * 110.73492 * 213.05411 * 3 2 1 26 26 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 27 27 H 1.08003 * 119.84199 * 180.18987 * 16 15 14 28 28 H 1.07998 * 119.83992 * 180.02562 * 17 16 15 29 29 H 1.07994 * 120.09105 * 179.97438 * 18 17 16 30 30 H 0.96698 * 114.00778 * 89.99619 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9962 1.3851 0.0000 4 6 2.2346 1.6519 1.5040 5 1 1.3641 2.1291 1.9543 6 6 3.4676 2.4941 1.7078 7 1 4.3171 2.0886 2.2372 8 6 3.5112 3.7824 1.2184 9 7 2.4768 4.2760 0.5734 10 14 5.0392 4.8266 1.4716 11 1 4.9187 5.5795 2.7458 12 1 6.2353 3.9481 1.5269 13 1 5.1784 5.7820 0.3433 14 6 2.4358 0.2600 2.0690 15 6 1.9709 -0.6541 1.1320 16 6 2.0526 -2.0168 1.4150 17 6 2.5846 -2.4488 2.6126 18 6 3.0419 -1.5351 3.5428 19 6 2.9669 -0.1757 3.2699 20 8 3.4156 0.7265 4.1819 21 1 -0.3634 0.5155 0.8891 22 1 -0.3634 0.5122 -0.8908 23 1 -0.3633 -1.0277 0.0019 24 1 1.2619 2.0816 -0.4047 25 1 2.9320 1.4418 -0.5560 26 1 2.5073 5.1825 0.2295 27 1 1.6974 -2.7378 0.6935 28 1 2.6446 -3.5062 2.8237 29 1 3.4572 -1.8774 4.4791 30 1 2.7421 1.0173 4.8119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260453565.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = -2.236722 kcal Electronic energy + Delta-G solvation = -14882.661992 eV Core-core repulsion = 12450.241708 eV Total energy + Delta-G solvation = -2432.420284 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05757 -37.22676 -35.22113 -33.06054 -30.66586 -28.85409 -27.74209 -25.82616 -23.84606 -22.08842 -20.53108 -19.96948 -17.31286 -16.45282 -15.39091 -15.21358 -14.98668 -14.32261 -14.23348 -13.52763 -13.27428 -12.73534 -12.33124 -11.73641 -11.57900 -11.44013 -11.18221 -11.04857 -10.83373 -10.64329 -10.52324 -10.02116 -9.47170 -9.13103 -8.74307 -8.46562 -7.84316 -7.16140 -6.07222 -4.07198 1.85358 1.99032 3.31733 3.37907 3.44338 4.17717 4.44895 4.52852 4.93880 5.27046 5.46377 5.60588 5.67216 5.81032 5.94660 6.05123 6.21608 6.23233 6.38577 6.46537 6.76628 6.94076 6.96700 7.13050 7.23236 7.29450 7.58989 7.72975 7.93023 7.97651 8.30262 8.43008 8.97242 9.56275 11.03204 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.011661 C = 0.008986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.956253 B = 2400.552876 C = 3115.294013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.509 5.509 3 C 0.070 3.930 4 C 0.064 3.936 5 H 0.042 0.958 6 C -0.494 4.494 7 H 0.067 0.933 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.273 1.273 13 H -0.287 1.287 14 C -0.122 4.122 15 C 0.094 3.906 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.171 4.171 19 C 0.131 3.869 20 O -0.486 6.486 21 H 0.029 0.971 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.261 0.739 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -8.745 2.903 9.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.227 5.227 3 C -0.056 4.056 4 C 0.045 3.955 5 H 0.060 0.940 6 C -0.532 4.532 7 H 0.085 0.915 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.198 1.198 13 H -0.213 1.213 14 C -0.125 4.125 15 C -0.002 4.002 16 C -0.153 4.153 17 C -0.129 4.129 18 C -0.190 4.190 19 C 0.085 3.915 20 O -0.294 6.294 21 H 0.048 0.952 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.831 -8.869 1.980 9.518 hybrid contribution 0.153 1.128 0.977 1.500 sum -2.678 -7.741 2.957 8.708 Atomic orbital electron populations 1.22337 0.86968 1.01033 1.00928 1.60514 1.07430 1.18289 1.36455 1.23363 0.99933 0.83009 0.99299 1.18838 0.98318 0.87155 0.91150 0.94049 1.20991 0.99894 0.96979 1.35355 0.91513 1.24988 0.96388 0.97717 0.95075 1.69938 1.29639 1.16247 1.37763 0.86496 0.83433 0.79988 0.77571 1.20706 1.19821 1.21336 1.22111 0.97657 0.99244 0.93458 1.19634 0.97930 0.92916 0.89745 1.20364 1.04162 0.93091 0.97667 1.20535 1.00098 0.98638 0.93673 1.21216 1.04661 0.92400 1.00739 1.17879 0.96492 0.87588 0.89491 1.84863 1.38668 1.60869 1.45025 0.95239 0.91311 0.92253 0.90297 0.90347 0.92920 0.86706 0.86267 0.86248 0.76690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.28 60.06 0.56 1.14 16 2 N -0.51 -10.59 5.34 -176.61 -0.94 -11.53 16 3 C 0.07 1.66 5.72 -2.27 -0.01 1.65 16 4 C 0.06 1.63 2.87 -91.66 -0.26 1.37 16 5 H 0.04 1.13 8.14 -51.92 -0.42 0.70 16 6 C -0.49 -13.69 7.98 -34.44 -0.27 -13.97 16 7 H 0.07 1.93 7.11 -52.49 -0.37 1.56 16 8 C 0.06 1.64 5.35 -17.82 -0.10 1.55 16 9 N -0.90 -25.23 12.55 55.43 0.70 -24.54 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.12 -2.76 5.61 -103.91 -0.58 -3.34 16 15 C 0.09 1.96 5.59 -83.42 -0.47 1.49 16 16 C -0.13 -2.32 10.07 -39.24 -0.39 -2.72 16 17 C -0.11 -1.76 10.01 -39.70 -0.40 -2.15 16 18 C -0.17 -2.94 10.00 -39.38 -0.39 -3.33 16 19 C 0.13 2.68 6.57 -39.31 -0.26 2.42 16 20 O -0.49 -9.70 12.41 -19.43 -0.24 -9.94 16 21 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.08 1.91 7.66 -51.93 -0.40 1.51 16 25 H 0.08 2.01 7.91 -51.93 -0.41 1.60 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.38 5.73 9.06 45.56 0.41 6.15 16 LS Contribution 256.96 15.07 3.87 3.87 Total: -1.00 -30.18 256.96 -7.08 -37.26 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.86 Total: 4.11 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.58 Total: -15.91 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.25 Total: -36.07 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.24 Total: -9.94 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.18 -7.08 -37.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260453565.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.025 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds