Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48201 * 110.83932 * 2 1 4 4 C 1.54600 * 102.48471 * 94.86123 * 3 2 1 5 5 H 1.09007 * 110.74574 * 266.95515 * 4 3 2 6 6 C 1.50694 * 110.74381 * 143.79846 * 4 3 2 7 7 H 1.08002 * 120.00179 * 243.90168 * 6 4 3 8 8 C 1.37879 * 120.00472 * 63.90486 * 6 4 3 9 9 N 1.31514 * 119.99350 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 120.00608 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.51564 * 102.97821 * 25.37285 * 4 3 2 15 15 C 1.38910 * 107.96846 * 343.92193 * 14 4 3 16 16 C 1.39414 * 119.12210 * 179.65531 * 15 14 4 17 17 C 1.37980 * 120.31494 * 0.21791 * 16 15 14 18 18 C 1.38176 * 120.32665 * 359.97438 * 17 16 15 19 19 C 1.38354 * 131.58254 * 163.89151 * 14 4 3 20 20 O 1.35902 * 120.01380 * 0.22243 * 19 14 4 21 21 H 1.09009 * 109.47277 * 300.10292 * 1 2 3 22 22 H 1.08995 * 109.47392 * 60.10079 * 1 2 3 23 23 H 1.09006 * 109.46997 * 180.10484 * 1 2 3 24 24 H 1.09000 * 110.94930 * 336.57226 * 3 2 1 25 25 H 1.08999 * 110.73492 * 213.05411 * 3 2 1 26 26 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 27 27 H 1.08003 * 119.84199 * 180.18987 * 16 15 14 28 28 H 1.07998 * 119.83992 * 180.02562 * 17 16 15 29 29 H 1.07994 * 120.09105 * 179.97438 * 18 17 16 30 30 H 0.96698 * 114.00778 * 89.99619 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9962 1.3851 0.0000 4 6 2.2346 1.6519 1.5040 5 1 1.3641 2.1291 1.9543 6 6 3.4676 2.4941 1.7078 7 1 4.3171 2.0886 2.2372 8 6 3.5112 3.7824 1.2184 9 7 2.4768 4.2760 0.5734 10 14 5.0392 4.8266 1.4716 11 1 4.9187 5.5795 2.7458 12 1 6.2353 3.9481 1.5269 13 1 5.1784 5.7820 0.3433 14 6 2.4358 0.2600 2.0690 15 6 1.9709 -0.6541 1.1320 16 6 2.0526 -2.0168 1.4150 17 6 2.5846 -2.4488 2.6126 18 6 3.0419 -1.5351 3.5428 19 6 2.9669 -0.1757 3.2699 20 8 3.4156 0.7265 4.1819 21 1 -0.3634 0.5155 0.8891 22 1 -0.3634 0.5122 -0.8908 23 1 -0.3633 -1.0277 0.0019 24 1 1.2619 2.0816 -0.4047 25 1 2.9320 1.4418 -0.5560 26 1 2.5073 5.1825 0.2295 27 1 1.6974 -2.7378 0.6935 28 1 2.6446 -3.5062 2.8237 29 1 3.4572 -1.8774 4.4791 30 1 2.7421 1.0173 4.8119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260453565.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = -23.749756 kcal Electronic energy + Delta-G solvation = -14883.594867 eV Core-core repulsion = 12450.241708 eV Total energy + Delta-G solvation = -2433.353159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62608 -38.77269 -36.71673 -35.04850 -32.42838 -30.31864 -29.39545 -27.56693 -25.66029 -23.69492 -22.01257 -21.70641 -18.88583 -18.45317 -17.04541 -16.75626 -16.56847 -16.13112 -15.85948 -15.04890 -14.81039 -14.31957 -14.18227 -13.38866 -13.18039 -12.97149 -12.86480 -12.78847 -12.59688 -12.47784 -12.31318 -11.68084 -11.30718 -10.99037 -10.69931 -10.23619 -9.34944 -8.75564 -8.18940 -6.25824 0.42302 0.53144 1.37838 1.38590 1.50114 2.40146 2.76998 2.94351 3.13052 3.51873 4.07017 4.20518 4.27112 4.43143 4.48699 4.54006 4.69156 4.81916 4.87577 4.90267 5.10008 5.15026 5.46600 5.55289 5.58930 5.70837 5.78961 5.82392 6.07743 6.25430 6.44863 6.79865 7.02296 7.40070 8.90363 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.011661 C = 0.008986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.956253 B = 2400.552876 C = 3115.294013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.509 5.509 3 C 0.084 3.916 4 C 0.064 3.936 5 H 0.007 0.993 6 C -0.508 4.508 7 H 0.048 0.952 8 C 0.015 3.985 9 N -0.920 5.920 10 Si 0.956 3.044 11 H -0.274 1.274 12 H -0.276 1.276 13 H -0.279 1.279 14 C -0.167 4.167 15 C 0.075 3.925 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.165 4.165 19 C 0.113 3.887 20 O -0.505 6.505 21 H 0.015 0.985 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.264 0.736 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.150 0.850 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -11.130 3.439 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.227 5.227 3 C -0.043 4.043 4 C 0.045 3.955 5 H 0.025 0.975 6 C -0.546 4.546 7 H 0.067 0.933 8 C -0.183 4.183 9 N -0.559 5.559 10 Si 0.782 3.218 11 H -0.200 1.200 12 H -0.201 1.201 13 H -0.204 1.204 14 C -0.170 4.170 15 C -0.021 4.021 16 C -0.148 4.148 17 C -0.108 4.108 18 C -0.184 4.184 19 C 0.068 3.932 20 O -0.316 6.316 21 H 0.034 0.966 22 H 0.097 0.903 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.187 0.813 29 H 0.168 0.832 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.609 -11.263 2.528 11.834 hybrid contribution 0.055 1.776 0.876 1.980 sum -2.554 -9.487 3.404 10.398 Atomic orbital electron populations 1.22443 0.84903 1.03032 1.00814 1.60524 1.09313 1.15906 1.36939 1.22917 0.98386 0.85088 0.97913 1.18618 0.95946 0.88834 0.92091 0.97538 1.21122 1.00312 0.97864 1.35309 0.93345 1.25692 0.99061 0.98744 0.94846 1.70031 1.31063 1.16543 1.38256 0.85582 0.79954 0.78423 0.77861 1.19991 1.20076 1.20418 1.22038 1.01370 0.97877 0.95681 1.19938 0.98668 0.94250 0.89233 1.20762 1.03396 0.91763 0.98922 1.21110 0.96977 1.00795 0.91957 1.21560 1.03742 0.90776 1.02306 1.18238 0.96815 0.89163 0.88950 1.84792 1.39893 1.61451 1.45444 0.96600 0.90261 0.89059 0.91629 0.93075 0.92749 0.83706 0.81324 0.83199 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.28 127.69 1.18 2.33 16 2 N -0.51 -21.20 5.34 -712.67 -3.80 -25.00 16 3 C 0.08 4.18 5.72 86.60 0.50 4.67 16 4 C 0.06 3.42 2.87 -11.47 -0.03 3.39 16 5 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 6 C -0.51 -29.36 7.98 25.60 0.20 -29.16 16 7 H 0.05 2.91 7.11 -2.91 -0.02 2.89 16 8 C 0.02 0.87 5.35 84.66 0.45 1.33 16 9 N -0.92 -53.44 12.55 21.45 0.27 -53.17 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.42 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 C -0.17 -7.67 5.61 -19.40 -0.11 -7.78 16 15 C 0.08 3.06 5.59 38.27 0.21 3.27 16 16 C -0.13 -4.02 10.07 22.49 0.23 -3.80 16 17 C -0.09 -2.41 10.01 22.19 0.22 -2.19 16 18 C -0.17 -5.11 10.00 22.40 0.22 -4.89 16 19 C 0.11 4.57 6.57 22.45 0.15 4.72 16 20 O -0.50 -20.31 12.41 -92.45 -1.15 -21.46 16 21 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 22 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 23 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 24 H 0.07 3.35 7.66 -2.39 -0.02 3.33 16 25 H 0.05 2.77 7.91 -2.39 -0.02 2.75 16 26 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 27 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 28 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.39 12.18 9.06 -74.06 -0.67 11.50 16 Total: -1.00 -67.47 256.96 1.05 -66.42 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.47 Total: 13.89 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 3.23 Total: -28.10 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -3.53 Total: -78.18 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.15 Total: -21.46 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.47 1.05 -66.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260453565.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.675 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds