Wall clock time and date at job start Mon Mar 30 2020 02:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48503 * 109.47352 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47094 * 239.99899 * 3 2 1 6 6 H 1.48501 * 109.47052 * 119.99936 * 3 2 1 7 7 C 1.37871 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47374 * 174.39267 * 9 7 2 11 11 H 1.08998 * 109.90842 * 51.98439 * 10 9 7 12 12 C 1.53992 * 109.91811 * 173.08964 * 10 9 7 13 13 C 1.54596 * 105.13836 * 120.57513 * 12 10 9 14 14 C 1.54941 * 102.92122 * 21.95756 * 13 12 10 15 15 N 1.47901 * 109.91383 * 290.88653 * 10 9 7 16 16 C 1.46902 * 111.00236 * 94.80359 * 15 10 9 17 17 C 1.52995 * 109.46794 * 175.93523 * 16 15 10 18 18 F 1.39900 * 109.47270 * 299.99571 * 17 16 15 19 19 F 1.39900 * 109.47722 * 59.99865 * 17 16 15 20 20 H 0.97000 * 120.00104 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46920 * 294.39067 * 9 7 2 22 22 H 1.08996 * 109.47162 * 54.38825 * 9 7 2 23 23 H 1.08996 * 110.31001 * 239.49276 * 12 10 9 24 24 H 1.08996 * 110.30761 * 1.56104 * 12 10 9 25 25 H 1.09004 * 110.72131 * 140.31721 * 13 12 10 26 26 H 1.08994 * 110.72529 * 263.59804 * 13 12 10 27 27 H 1.09001 * 110.66306 * 81.02118 * 14 13 12 28 28 H 1.08999 * 110.66250 * 204.14747 * 14 13 12 29 29 H 1.09005 * 109.46884 * 295.93133 * 16 15 10 30 30 H 1.08993 * 109.46866 * 55.93434 * 16 15 10 31 31 H 1.09004 * 109.47120 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2393 -3.6587 -0.1398 11 1 3.0260 -3.5686 0.6093 12 6 1.5024 -4.9999 0.0321 13 6 1.7376 -5.7624 -1.2920 14 6 3.0109 -5.0863 -1.8597 15 7 2.8314 -3.6548 -1.4951 16 6 4.1142 -2.9391 -1.5071 17 6 4.7431 -3.0429 -2.8980 18 9 4.9571 -4.3889 -3.2137 19 9 3.8825 -2.4735 -3.8427 20 1 -0.4850 -0.8400 -0.0004 21 1 0.7015 -2.6014 0.9363 22 1 0.5515 -2.5148 -0.8352 23 1 1.9218 -5.5575 0.8694 24 1 0.4372 -4.8289 0.1879 25 1 1.9151 -6.8208 -1.1013 26 1 0.8946 -5.6276 -1.9697 27 1 3.9052 -5.4919 -1.3865 28 1 3.0595 -5.2051 -2.9421 29 1 3.9475 -1.8903 -1.2612 30 1 4.7847 -3.3827 -0.7712 31 1 5.6947 -2.5115 -2.9071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260472274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:05 Heat of formation + Delta-G solvation = -108.330195 kcal Electronic energy + Delta-G solvation = -15777.198564 eV Core-core repulsion = 12921.781287 eV Total energy + Delta-G solvation = -2855.417278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.59524 -46.55005 -38.54299 -33.34097 -32.43887 -30.00191 -27.73010 -25.66884 -23.10354 -21.87560 -20.67194 -19.53221 -17.16508 -16.97636 -16.85486 -15.76073 -14.94295 -14.59422 -13.94028 -13.69389 -13.63656 -13.03180 -12.79401 -12.67321 -12.35983 -12.07623 -11.67915 -11.31830 -10.96720 -10.81990 -10.62562 -10.53469 -10.36617 -10.08544 -9.98758 -9.58982 -8.42491 -8.26254 -7.77952 -6.27994 -3.95997 3.44350 3.47156 3.64787 4.14711 4.35666 4.58260 4.58971 4.95567 5.10840 5.20080 5.30006 5.47646 5.52247 5.75074 5.82579 5.94942 6.14804 6.20543 6.24426 6.27513 6.48202 6.59111 6.84779 7.20814 7.41969 7.56015 7.84775 8.25806 8.50445 8.95206 9.74334 11.12037 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.011296 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.516900 B = 2478.170419 C = 3256.050188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.063 2.937 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.591 4.591 8 H 0.047 0.953 9 C 0.023 3.977 10 C 0.083 3.917 11 H 0.040 0.960 12 C -0.130 4.130 13 C -0.123 4.123 14 C 0.027 3.973 15 N -0.490 5.490 16 C -0.007 4.007 17 C 0.265 3.735 18 F -0.213 7.213 19 F -0.195 7.195 20 H 0.269 0.731 21 H 0.006 0.994 22 H 0.021 0.979 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.050 0.950 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 -8.424 -2.945 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.891 3.109 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.629 4.629 8 H 0.065 0.935 9 C -0.014 4.014 10 C -0.025 4.025 11 H 0.058 0.942 12 C -0.168 4.168 13 C -0.161 4.161 14 C -0.101 4.101 15 N -0.215 5.215 16 C -0.136 4.136 17 C 0.211 3.789 18 F -0.195 7.195 19 F -0.176 7.176 20 H 0.079 0.921 21 H 0.024 0.976 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.148 0.852 30 H 0.068 0.932 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.256 -6.510 -3.338 11.031 hybrid contribution 0.820 -2.121 0.506 2.330 sum 9.076 -8.631 -2.833 12.841 Atomic orbital electron populations 1.70762 1.06882 1.30605 1.46794 1.25730 0.96596 1.02444 0.94077 0.83636 0.75056 0.75872 0.76288 1.20796 1.21433 1.21659 1.21976 0.93697 0.92015 1.55203 0.93452 1.19254 0.94163 0.92272 0.95755 1.22445 0.97023 0.95594 0.87411 0.94191 1.22528 1.01491 0.96065 0.96728 1.22471 0.98294 0.98059 0.97282 1.23564 0.96284 0.89237 1.01009 1.64775 1.20297 1.09874 1.26528 1.23646 0.91885 1.05217 0.92863 1.22034 0.92918 0.76059 0.87857 1.92919 1.95553 1.36814 1.94217 1.93003 1.73211 1.84277 1.67090 0.92062 0.97579 0.96037 0.92551 0.91091 0.91924 0.91076 0.94446 0.90010 0.85242 0.93178 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.65 55.43 0.76 -27.43 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.06 25.17 29.90 -169.99 -5.08 20.09 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.59 -16.32 8.26 -34.44 -0.28 -16.60 16 8 H 0.05 1.25 5.47 -52.49 -0.29 0.96 16 9 C 0.02 0.58 3.78 -27.88 -0.11 0.48 16 10 C 0.08 1.73 2.54 -66.64 -0.17 1.56 16 11 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 12 C -0.13 -2.27 6.57 -25.38 -0.17 -2.44 16 13 C -0.12 -1.93 7.06 -24.87 -0.18 -2.11 16 14 C 0.03 0.45 4.81 -1.74 -0.01 0.44 16 15 N -0.49 -9.79 4.84 -222.33 -1.08 -10.87 16 16 C -0.01 -0.12 4.89 -3.83 -0.02 -0.14 16 17 C 0.27 4.08 5.48 37.16 0.20 4.29 16 18 F -0.21 -3.30 13.94 2.25 0.03 -3.27 16 19 F -0.19 -3.63 17.26 2.25 0.04 -3.59 16 20 H 0.27 8.30 7.18 -40.82 -0.29 8.00 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.02 0.60 7.78 -51.93 -0.40 0.19 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.59 7.75 -51.93 -0.40 0.19 16 28 H 0.08 1.39 6.85 -51.93 -0.36 1.03 16 29 H 0.13 2.60 5.32 -51.93 -0.28 2.32 16 30 H 0.05 0.80 7.98 -51.93 -0.41 0.38 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 254.15 15.07 3.83 3.83 Total: -1.00 -31.04 254.15 -6.46 -37.51 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.14 Total: -2.09 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.82 Total: -14.18 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.32 Total: -38.30 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.07 Total: -6.86 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.04 -6.46 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.824 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds