Wall clock time and date at job start Mon Mar 30 2020 02:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48503 * 109.47352 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47094 * 239.99899 * 3 2 1 6 6 H 1.48501 * 109.47052 * 119.99936 * 3 2 1 7 7 C 1.37871 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47374 * 174.39267 * 9 7 2 11 11 H 1.08998 * 109.90842 * 51.98439 * 10 9 7 12 12 C 1.53992 * 109.91811 * 173.08964 * 10 9 7 13 13 C 1.54596 * 105.13836 * 120.57513 * 12 10 9 14 14 C 1.54941 * 102.92122 * 21.95756 * 13 12 10 15 15 N 1.47901 * 109.91383 * 290.88653 * 10 9 7 16 16 C 1.46902 * 111.00236 * 94.80359 * 15 10 9 17 17 C 1.52995 * 109.46794 * 175.93523 * 16 15 10 18 18 F 1.39900 * 109.47270 * 299.99571 * 17 16 15 19 19 F 1.39900 * 109.47722 * 59.99865 * 17 16 15 20 20 H 0.97000 * 120.00104 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46920 * 294.39067 * 9 7 2 22 22 H 1.08996 * 109.47162 * 54.38825 * 9 7 2 23 23 H 1.08996 * 110.31001 * 239.49276 * 12 10 9 24 24 H 1.08996 * 110.30761 * 1.56104 * 12 10 9 25 25 H 1.09004 * 110.72131 * 140.31721 * 13 12 10 26 26 H 1.08994 * 110.72529 * 263.59804 * 13 12 10 27 27 H 1.09001 * 110.66306 * 81.02118 * 14 13 12 28 28 H 1.08999 * 110.66250 * 204.14747 * 14 13 12 29 29 H 1.09005 * 109.46884 * 295.93133 * 16 15 10 30 30 H 1.08993 * 109.46866 * 55.93434 * 16 15 10 31 31 H 1.09004 * 109.47120 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2393 -3.6587 -0.1398 11 1 3.0260 -3.5686 0.6093 12 6 1.5024 -4.9999 0.0321 13 6 1.7376 -5.7624 -1.2920 14 6 3.0109 -5.0863 -1.8597 15 7 2.8314 -3.6548 -1.4951 16 6 4.1142 -2.9391 -1.5071 17 6 4.7431 -3.0429 -2.8980 18 9 4.9571 -4.3889 -3.2137 19 9 3.8825 -2.4735 -3.8427 20 1 -0.4850 -0.8400 -0.0004 21 1 0.7015 -2.6014 0.9363 22 1 0.5515 -2.5148 -0.8352 23 1 1.9218 -5.5575 0.8694 24 1 0.4372 -4.8289 0.1879 25 1 1.9151 -6.8208 -1.1013 26 1 0.8946 -5.6276 -1.9697 27 1 3.9052 -5.4919 -1.3865 28 1 3.0595 -5.2051 -2.9421 29 1 3.9475 -1.8903 -1.2612 30 1 4.7847 -3.3827 -0.7712 31 1 5.6947 -2.5115 -2.9071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:05 Heat of formation + Delta-G solvation = -128.883729 kcal Electronic energy + Delta-G solvation = -15778.089833 eV Core-core repulsion = 12921.781287 eV Total energy + Delta-G solvation = -2856.308546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.85114 -47.83959 -40.04358 -35.45451 -33.80963 -31.81809 -29.06250 -27.53245 -24.88404 -23.45484 -22.01396 -21.13203 -18.93457 -18.42409 -18.24089 -17.18682 -16.32132 -16.10167 -15.59415 -15.45421 -15.03254 -14.73830 -14.32225 -14.07977 -13.84053 -13.52234 -13.19508 -13.15261 -12.62253 -12.41361 -12.26912 -12.05308 -11.92576 -11.84783 -11.45532 -11.24101 -10.49261 -10.46418 -9.27562 -8.57670 -6.26212 1.52981 1.62514 1.79227 2.61508 2.89496 3.01444 3.26849 3.38521 3.67917 3.75278 3.89061 3.99918 4.19287 4.32443 4.51792 4.59655 4.67670 4.77934 4.86316 4.94250 5.01287 5.12596 5.21901 5.30820 5.41375 6.02798 6.12327 6.17868 6.27199 6.67580 7.54064 8.81965 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.011296 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.516900 B = 2478.170419 C = 3256.050188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.044 4.044 3 Si 1.111 2.889 4 H -0.290 1.290 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.593 4.593 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.087 3.913 11 H 0.040 0.960 12 C -0.128 4.128 13 C -0.116 4.116 14 C 0.033 3.967 15 N -0.522 5.522 16 C -0.011 4.011 17 C 0.266 3.734 18 F -0.212 7.212 19 F -0.217 7.217 20 H 0.252 0.748 21 H -0.014 1.014 22 H -0.014 1.014 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.166 -9.228 -3.041 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.241 4.241 3 Si 0.933 3.067 4 H -0.216 1.216 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.631 4.631 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.021 4.021 11 H 0.058 0.942 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.095 4.095 15 N -0.247 5.247 16 C -0.140 4.140 17 C 0.213 3.787 18 F -0.193 7.193 19 F -0.199 7.199 20 H 0.062 0.938 21 H 0.004 0.996 22 H 0.004 0.996 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.640 -7.350 -3.437 13.381 hybrid contribution 0.078 -1.924 0.538 2.000 sum 10.719 -9.275 -2.899 14.468 Atomic orbital electron populations 1.70906 1.08194 1.29615 1.49751 1.27317 0.96606 1.06761 0.93376 0.83028 0.74260 0.71411 0.78031 1.21616 1.19297 1.19095 1.22431 0.94658 0.92724 1.53284 0.92050 1.19149 0.94465 0.94287 0.93177 1.22227 0.96135 0.95295 0.88401 0.94184 1.22495 1.00417 0.94791 0.98874 1.22485 0.97463 0.99747 0.95726 1.23559 0.97450 0.87399 1.01055 1.64616 1.22121 1.12250 1.25708 1.23620 0.91636 1.03475 0.95266 1.22362 0.94157 0.76464 0.85754 1.92916 1.95482 1.36890 1.94054 1.92960 1.74344 1.84709 1.67875 0.93847 0.99583 0.99588 0.89947 0.92415 0.88379 0.92059 0.92703 0.90161 0.87954 0.90877 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.65 21.45 0.29 -59.96 16 2 C -0.04 -2.58 5.46 84.65 0.46 -2.12 16 3 Si 1.11 50.36 29.90 68.60 2.05 52.41 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.59 -33.15 8.26 25.60 0.21 -32.94 16 8 H 0.06 3.20 5.47 -2.91 -0.02 3.19 16 9 C 0.03 1.41 3.78 29.85 0.11 1.52 16 10 C 0.09 3.61 2.54 45.06 0.11 3.73 16 11 H 0.04 1.64 7.66 -2.39 -0.02 1.62 16 12 C -0.13 -4.28 6.57 31.47 0.21 -4.08 16 13 C -0.12 -3.38 7.06 31.80 0.22 -3.15 16 14 C 0.03 1.02 4.81 86.60 0.42 1.43 16 15 N -0.52 -20.26 4.84 -857.33 -4.15 -24.41 16 16 C -0.01 -0.37 4.89 86.30 0.42 0.06 16 17 C 0.27 7.46 5.48 71.98 0.39 7.85 16 18 F -0.21 -5.90 13.94 44.97 0.63 -5.27 16 19 F -0.22 -7.82 17.26 44.97 0.78 -7.04 16 20 H 0.25 16.40 7.18 -92.71 -0.67 15.73 16 21 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 22 H -0.01 -0.85 7.78 -2.39 -0.02 -0.87 16 23 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.06 2.07 7.69 -2.39 -0.02 2.05 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.53 7.75 -2.39 -0.02 1.51 16 28 H 0.08 2.54 6.85 -2.39 -0.02 2.53 16 29 H 0.10 3.99 5.32 -2.38 -0.01 3.98 16 30 H 0.07 2.09 7.98 -2.39 -0.02 2.08 16 31 H 0.16 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -68.64 254.15 3.38 -65.26 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.22 Total: 6.72 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 2.57 Total: -27.71 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.86 Total: -84.37 kcal Atomic # 9 Polarization: -13.72 SS G_CDS: 1.40 Total: -12.31 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.41 kcal Total: -68.64 3.38 -65.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.625 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds