Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47191 * 239.99824 * 3 2 1 5 5 H 1.48496 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46693 * 120.00145 * 3 2 1 7 7 C 1.37878 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00112 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47387 * 300.00787 * 9 7 2 11 11 N 1.46902 * 109.46910 * 60.00610 * 9 7 2 12 12 C 1.50700 * 109.47302 * 180.02562 * 9 7 2 13 13 C 1.38386 * 120.03247 * 85.02323 * 12 9 7 14 14 N 1.32020 * 119.92987 * 180.02562 * 13 12 9 15 15 C 1.32397 * 120.22415 * 359.93346 * 14 13 12 16 16 C 1.38346 * 119.84407 * 0.07057 * 15 14 13 17 17 N 1.32014 * 120.03808 * 265.00407 * 12 9 7 18 18 C 1.51651 * 109.82526 * 180.11786 * 16 15 14 19 19 C 1.54348 * 105.02472 * 16.92247 * 18 16 15 20 20 C 1.51348 * 130.40912 * 180.02562 * 15 14 13 21 21 H 0.97006 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.00903 * 111.00112 * 59.99336 * 11 9 7 23 23 H 1.00894 * 110.99935 * 183.95390 * 11 9 7 24 24 H 1.08000 * 120.04148 * 359.97438 * 13 12 9 25 25 H 1.08994 * 110.25862 * 258.10122 * 18 16 15 26 26 H 1.09010 * 110.48914 * 135.85697 * 18 16 15 27 27 H 1.09002 * 110.81804 * 215.56074 * 19 18 16 28 28 H 1.09002 * 110.81614 * 92.22087 * 19 18 16 29 29 H 1.08997 * 110.30615 * 43.94011 * 20 15 14 30 30 H 1.08999 * 110.38604 * 281.82832 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4061 -2.5767 -1.1998 12 6 2.2302 -3.6447 -0.0005 13 6 2.7593 -4.1036 1.1930 14 7 3.6174 -5.1069 1.1906 15 6 3.9730 -5.6770 0.0498 16 6 3.4441 -5.2181 -1.1434 17 7 2.5840 -4.2116 -1.1390 18 6 3.9999 -6.0291 -2.2980 19 6 4.5853 -7.3010 -1.6483 20 6 4.9227 -6.8243 -0.2194 21 1 -0.4850 0.8401 -0.0004 22 1 0.9638 -2.5251 -2.0390 23 1 -0.1579 -3.4133 -1.1912 24 1 2.4712 -3.6410 2.1255 25 1 4.7839 -5.4702 -2.8089 26 1 3.2056 -6.2925 -2.9965 27 1 5.4854 -7.6240 -2.1714 28 1 3.8446 -8.1003 -1.6254 29 1 4.7565 -7.6289 0.4968 30 1 5.9561 -6.4815 -0.1692 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260480811.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = 41.610072 kcal Electronic energy + Delta-G solvation = -14391.488480 eV Core-core repulsion = 11993.262287 eV Total energy + Delta-G solvation = -2398.226193 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86899 -36.68507 -34.59852 -33.22970 -31.32853 -28.99062 -27.85002 -26.08446 -24.07283 -22.55742 -20.73504 -20.34937 -17.22322 -16.51536 -15.92784 -15.27201 -14.92906 -14.29630 -13.96285 -13.56348 -13.17146 -13.00362 -12.40865 -12.17889 -11.95500 -11.34960 -11.28657 -11.03604 -10.93670 -10.81778 -10.80417 -10.40043 -9.98081 -9.32365 -8.50136 -8.42268 -8.12807 -7.06050 -5.93065 -4.09230 1.37470 1.75727 3.33704 3.38170 3.41056 4.07390 4.21231 4.32451 4.47948 4.84830 4.85798 4.93328 5.25707 5.34273 5.61532 5.64901 5.73885 5.77092 5.82205 5.94915 6.07492 6.14743 6.18106 6.43565 7.03054 7.24972 7.83476 7.90549 8.06009 8.41711 8.66241 9.04321 9.09597 9.59202 11.11186 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.045572 B = 0.007436 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.268847 B = 3764.422719 C = 3845.264504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.087 3.913 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.272 3.728 10 H 0.060 0.940 11 N -0.800 5.800 12 C 0.096 3.904 13 C 0.048 3.952 14 N -0.439 5.439 15 C 0.026 3.974 16 C 0.065 3.935 17 N -0.441 5.441 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.060 4.060 21 H 0.259 0.741 22 H 0.329 0.671 23 H 0.296 0.704 24 H 0.169 0.831 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -12.036 -2.149 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.120 4.120 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.160 3.840 10 H 0.077 0.923 11 N -0.324 5.324 12 C -0.046 4.046 13 C -0.114 4.114 14 N -0.153 5.153 15 C -0.114 4.114 16 C -0.076 4.076 17 N -0.156 5.156 18 C -0.103 4.103 19 C -0.155 4.155 20 C -0.099 4.099 21 H 0.068 0.932 22 H 0.142 0.858 23 H 0.106 0.894 24 H 0.186 0.814 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.506 -11.224 -1.878 13.109 hybrid contribution 1.084 0.183 -0.123 1.106 sum 7.590 -11.041 -2.001 13.547 Atomic orbital electron populations 1.70083 1.05642 1.26087 1.45988 1.24889 0.94687 0.98507 0.93942 0.86746 0.79709 0.83346 0.78590 1.20343 1.21134 1.20279 1.20624 0.92015 0.89057 1.55499 0.93120 1.18273 0.86512 0.87115 0.92121 0.92275 1.59146 1.27457 1.41188 1.04650 1.24600 0.96346 0.95865 0.87821 1.23547 0.94269 0.93132 1.00417 1.67552 1.10673 1.07784 1.29338 1.22458 0.99492 0.99275 0.90180 1.22748 0.94350 0.93901 0.96555 1.67506 1.11013 1.06581 1.30486 1.20912 1.00329 0.94227 0.94862 1.22309 1.01374 0.96979 0.94832 1.20779 0.97448 0.94540 0.97092 0.93155 0.85837 0.89419 0.81414 0.89415 0.89787 0.89818 0.90677 0.90145 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.24 12.77 55.43 0.71 -23.53 16 2 C 0.09 2.42 5.39 -17.82 -0.10 2.32 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.66 8.71 -34.44 -0.30 -14.96 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.27 6.77 2.88 -70.01 -0.20 6.57 16 10 H 0.06 1.55 8.12 -51.93 -0.42 1.13 16 11 N -0.80 -19.43 8.32 -6.65 -0.06 -19.49 16 12 C 0.10 2.15 5.82 -82.46 -0.48 1.67 16 13 C 0.05 0.98 10.91 -17.42 -0.19 0.79 16 14 N -0.44 -8.58 10.49 -9.06 -0.10 -8.67 16 15 C 0.03 0.45 7.32 -81.99 -0.60 -0.15 16 16 C 0.07 1.17 7.32 -81.84 -0.60 0.57 16 17 N -0.44 -9.34 9.52 -5.24 -0.05 -9.39 16 18 C -0.06 -0.82 6.79 -26.71 -0.18 -1.00 16 19 C -0.12 -1.13 7.07 -25.31 -0.18 -1.31 16 20 C -0.06 -0.73 6.77 -26.85 -0.18 -0.91 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 22 H 0.33 8.03 8.46 -39.29 -0.33 7.69 16 23 H 0.30 6.54 9.06 -39.30 -0.36 6.19 16 24 H 0.17 3.15 8.06 -52.49 -0.42 2.73 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -30.79 259.54 -7.22 -38.02 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.61 Total: 9.25 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.01 Total: -6.41 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.51 Total: -61.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.79 -7.22 -38.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260480811.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.626 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds