Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47191 * 239.99824 * 3 2 1 5 5 H 1.48496 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46693 * 120.00145 * 3 2 1 7 7 C 1.37878 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00112 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47387 * 300.00787 * 9 7 2 11 11 N 1.46902 * 109.46910 * 60.00610 * 9 7 2 12 12 C 1.50700 * 109.47302 * 180.02562 * 9 7 2 13 13 C 1.38386 * 120.03247 * 85.02323 * 12 9 7 14 14 N 1.32020 * 119.92987 * 180.02562 * 13 12 9 15 15 C 1.32397 * 120.22415 * 359.93346 * 14 13 12 16 16 C 1.38346 * 119.84407 * 0.07057 * 15 14 13 17 17 N 1.32014 * 120.03808 * 265.00407 * 12 9 7 18 18 C 1.51651 * 109.82526 * 180.11786 * 16 15 14 19 19 C 1.54348 * 105.02472 * 16.92247 * 18 16 15 20 20 C 1.51348 * 130.40912 * 180.02562 * 15 14 13 21 21 H 0.97006 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.00903 * 111.00112 * 59.99336 * 11 9 7 23 23 H 1.00894 * 110.99935 * 183.95390 * 11 9 7 24 24 H 1.08000 * 120.04148 * 359.97438 * 13 12 9 25 25 H 1.08994 * 110.25862 * 258.10122 * 18 16 15 26 26 H 1.09010 * 110.48914 * 135.85697 * 18 16 15 27 27 H 1.09002 * 110.81804 * 215.56074 * 19 18 16 28 28 H 1.09002 * 110.81614 * 92.22087 * 19 18 16 29 29 H 1.08997 * 110.30615 * 43.94011 * 20 15 14 30 30 H 1.08999 * 110.38604 * 281.82832 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4061 -2.5767 -1.1998 12 6 2.2302 -3.6447 -0.0005 13 6 2.7593 -4.1036 1.1930 14 7 3.6174 -5.1069 1.1906 15 6 3.9730 -5.6770 0.0498 16 6 3.4441 -5.2181 -1.1434 17 7 2.5840 -4.2116 -1.1390 18 6 3.9999 -6.0291 -2.2980 19 6 4.5853 -7.3010 -1.6483 20 6 4.9227 -6.8243 -0.2194 21 1 -0.4850 0.8401 -0.0004 22 1 0.9638 -2.5251 -2.0390 23 1 -0.1579 -3.4133 -1.1912 24 1 2.4712 -3.6410 2.1255 25 1 4.7839 -5.4702 -2.8089 26 1 3.2056 -6.2925 -2.9965 27 1 5.4854 -7.6240 -2.1714 28 1 3.8446 -8.1003 -1.6254 29 1 4.7565 -7.6289 0.4968 30 1 5.9561 -6.4815 -0.1692 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260480811.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = 18.836700 kcal Electronic energy + Delta-G solvation = -14392.476008 eV Core-core repulsion = 11993.262287 eV Total energy + Delta-G solvation = -2399.213721 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.30677 -38.00047 -36.24583 -34.91137 -33.29657 -30.47621 -28.98304 -28.00873 -25.61428 -24.12328 -22.11510 -21.71134 -18.78237 -18.49471 -17.17351 -16.74023 -16.58368 -16.16070 -15.69556 -14.93562 -14.44521 -14.30167 -14.00553 -13.72924 -13.30064 -13.03538 -12.75667 -12.66159 -12.51451 -12.13857 -12.02926 -11.89651 -11.89263 -11.26291 -10.61202 -9.96480 -9.64449 -8.94784 -8.04286 -6.27360 -0.10973 0.22983 1.41784 1.42731 1.50533 2.41470 2.75571 2.80626 3.03482 3.21724 3.67202 3.72017 3.95915 4.15427 4.32348 4.39080 4.49634 4.56382 4.76472 4.76948 4.89341 5.04236 5.14539 5.26214 5.30302 5.53236 5.66383 6.02141 6.38594 6.55594 6.92191 7.04320 7.18844 7.44451 8.99225 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.045572 B = 0.007436 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.268847 B = 3764.422719 C = 3845.264504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.037 0.963 9 C 0.277 3.723 10 H 0.035 0.965 11 N -0.806 5.806 12 C 0.070 3.930 13 C 0.033 3.967 14 N -0.451 5.451 15 C 0.027 3.973 16 C 0.052 3.948 17 N -0.462 5.462 18 C -0.065 4.065 19 C -0.100 4.100 20 C -0.060 4.060 21 H 0.260 0.740 22 H 0.327 0.673 23 H 0.307 0.693 24 H 0.172 0.828 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -13.638 -3.084 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.163 4.163 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.055 0.945 9 C 0.165 3.835 10 H 0.053 0.947 11 N -0.331 5.331 12 C -0.071 4.071 13 C -0.126 4.126 14 N -0.166 5.166 15 C -0.114 4.114 16 C -0.090 4.090 17 N -0.177 5.177 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.098 4.098 21 H 0.069 0.931 22 H 0.139 0.861 23 H 0.117 0.883 24 H 0.189 0.811 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.467 -12.812 -2.785 15.608 hybrid contribution 0.546 0.530 0.125 0.771 sum 9.013 -12.282 -2.660 15.465 Atomic orbital electron populations 1.70193 1.06901 1.26881 1.46878 1.25603 0.95492 1.01617 0.93557 0.85762 0.78546 0.79519 0.78540 1.20369 1.20316 1.19625 1.20844 0.91552 0.90754 1.55423 0.94455 1.17877 0.86774 0.87638 0.91231 0.94702 1.59035 1.27685 1.42013 1.04324 1.23996 0.97567 0.96478 0.89102 1.23529 0.95029 0.93999 1.00075 1.67643 1.10680 1.07683 1.30585 1.23558 0.98979 0.99635 0.89273 1.23771 0.93037 0.92909 0.99304 1.67421 1.12264 1.07881 1.30139 1.21179 1.00832 0.94834 0.93453 1.22376 1.03186 0.95466 0.92812 1.21063 0.96845 0.92776 0.99100 0.93107 0.86097 0.88297 0.81130 0.88055 0.88883 0.85963 0.89476 0.88557 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.19 12.77 21.45 0.27 -50.92 16 2 C 0.04 2.37 5.39 84.65 0.46 2.83 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.55 -31.00 8.71 25.60 0.22 -30.78 16 8 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 9 C 0.28 14.38 2.88 43.42 0.13 14.50 16 10 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 11 N -0.81 -40.41 8.32 -174.95 -1.46 -41.87 16 12 C 0.07 3.21 5.82 42.57 0.25 3.45 16 13 C 0.03 1.39 10.91 84.70 0.92 2.31 16 14 N -0.45 -17.46 10.49 -182.57 -1.91 -19.37 16 15 C 0.03 0.90 7.32 42.71 0.31 1.21 16 16 C 0.05 1.78 7.32 42.80 0.31 2.09 16 17 N -0.46 -19.68 9.52 -170.50 -1.62 -21.30 16 18 C -0.06 -1.41 6.79 30.61 0.21 -1.20 16 19 C -0.10 -1.43 7.07 31.51 0.22 -1.21 16 20 C -0.06 -1.19 6.77 30.52 0.21 -0.99 16 21 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 22 H 0.33 16.40 8.46 -89.69 -0.76 15.64 16 23 H 0.31 14.01 9.06 -89.70 -0.81 13.19 16 24 H 0.17 6.79 8.06 -2.91 -0.02 6.77 16 25 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.96 259.54 0.14 -67.82 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.40 Total: 27.07 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 3.24 Total: -7.77 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -4.72 Total: -133.46 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.96 0.14 -67.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260480811.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.656 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds