Wall clock time and date at job start Mon Mar 30 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38384 * 120.03735 * 84.72682 * 12 9 7 14 14 N 1.32020 * 119.92875 * 179.70549 * 13 12 9 15 15 C 1.32391 * 120.22142 * 0.56522 * 14 13 12 16 16 C 1.38343 * 119.84729 * 359.71285 * 15 14 13 17 17 N 1.32021 * 120.02929 * 264.99549 * 12 9 7 18 18 C 1.51355 * 109.74239 * 179.97438 * 16 15 14 19 19 C 1.54347 * 105.17192 * 342.82004 * 18 16 15 20 20 C 1.51350 * 130.40587 * 179.69390 * 15 14 13 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 23 23 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 24 24 H 1.08007 * 120.03153 * 359.97438 * 13 12 9 25 25 H 1.09002 * 110.30802 * 101.74744 * 18 16 15 26 26 H 1.09005 * 110.30249 * 223.89635 * 18 16 15 27 27 H 1.09001 * 110.82104 * 268.11187 * 19 18 16 28 28 H 1.08999 * 110.98740 * 144.65810 * 19 18 16 29 29 H 1.09003 * 110.29767 * 316.12731 * 20 15 14 30 30 H 1.08995 * 110.30319 * 78.27813 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.7639 -4.1049 1.1806 14 7 3.6172 -5.1123 1.1742 15 6 3.9730 -5.6770 0.0309 16 6 3.4439 -5.2131 -1.1602 17 7 2.5839 -4.2065 -1.1515 18 6 4.0029 -6.0159 -2.3151 19 6 5.2522 -6.7231 -1.7482 20 6 4.9229 -6.8229 -0.2435 21 1 -0.4850 0.8401 -0.0004 22 1 0.9642 -2.5347 2.0330 23 1 -0.3010 -1.8627 1.1883 24 1 2.4793 -3.6433 2.1146 25 1 3.2727 -6.7513 -2.6531 26 1 4.2822 -5.3546 -3.1353 27 1 6.1457 -6.1201 -1.9102 28 1 5.3716 -7.7145 -2.1851 29 1 5.8303 -6.7123 0.3503 30 1 4.4402 -7.7752 -0.0242 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260480816.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:58 Heat of formation + Delta-G solvation = 35.113304 kcal Electronic energy + Delta-G solvation = -14380.379571 eV Core-core repulsion = 11981.871657 eV Total energy + Delta-G solvation = -2398.507914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79861 -36.67042 -34.62758 -33.47670 -31.45236 -28.59370 -27.95570 -26.06565 -23.91374 -23.00124 -20.70988 -20.14712 -17.27443 -16.63060 -15.96420 -15.46232 -14.96589 -14.22125 -13.71720 -13.45954 -13.06315 -12.93605 -12.73367 -11.96371 -11.84280 -11.34610 -11.20949 -11.09271 -10.98839 -10.87023 -10.79800 -10.34722 -10.09987 -9.98887 -8.77531 -8.20264 -8.11754 -7.35643 -6.19624 -4.35481 1.47013 1.85001 3.17705 3.26432 3.31441 4.11553 4.24655 4.37442 4.40919 4.90823 4.92323 4.99658 5.07924 5.33392 5.66527 5.69932 5.79854 5.82943 5.89322 6.02124 6.14028 6.19519 6.24944 6.57379 7.09884 7.40684 7.64619 7.91342 8.02871 8.49767 8.60280 8.78568 8.97177 9.35701 10.79908 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.042913 B = 0.007568 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.326263 B = 3698.877659 C = 3887.988710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.256 3.744 10 H 0.063 0.937 11 N -0.849 5.849 12 C 0.146 3.854 13 C 0.056 3.944 14 N -0.440 5.440 15 C 0.025 3.975 16 C 0.065 3.935 17 N -0.440 5.440 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.059 4.059 21 H 0.268 0.732 22 H 0.312 0.688 23 H 0.363 0.637 24 H 0.167 0.833 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 -9.956 -1.324 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.073 0.927 9 C 0.144 3.856 10 H 0.081 0.919 11 N -0.381 5.381 12 C 0.005 3.995 13 C -0.105 4.105 14 N -0.154 5.154 15 C -0.115 4.115 16 C -0.076 4.076 17 N -0.155 5.155 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.098 4.098 21 H 0.078 0.922 22 H 0.122 0.878 23 H 0.180 0.820 24 H 0.184 0.816 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.932 -10.556 -1.602 12.730 hybrid contribution 0.755 2.081 0.241 2.227 sum 7.688 -8.474 -1.361 11.522 Atomic orbital electron populations 1.69743 1.05848 1.27426 1.49863 1.24983 0.94997 0.99381 0.93999 0.86380 0.80054 0.82847 0.77817 1.19768 1.20658 1.20720 1.21668 0.93524 0.90539 1.52624 0.92701 1.17848 0.88710 0.86392 0.92607 0.91931 1.59492 1.18388 1.56562 1.03632 1.22878 0.94541 0.94388 0.87659 1.23358 0.93667 0.93230 1.00228 1.67559 1.10910 1.07795 1.29165 1.22472 0.99869 0.98958 0.90196 1.22653 0.94494 0.93802 0.96674 1.67543 1.10885 1.06566 1.30555 1.20853 0.96703 0.97560 0.95264 1.22309 0.97632 1.01105 0.94453 1.20773 0.97503 0.95044 0.96477 0.92246 0.87788 0.81975 0.81599 0.89440 0.89743 0.90658 0.89814 0.90143 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 11.55 55.43 0.64 -23.54 16 2 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.74 8.71 -34.44 -0.30 -15.04 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.26 6.52 3.11 -70.02 -0.22 6.30 16 10 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 11 N -0.85 -19.90 8.96 -6.65 -0.06 -19.96 16 12 C 0.15 3.43 5.83 -82.46 -0.48 2.95 16 13 C 0.06 1.20 10.48 -17.42 -0.18 1.02 16 14 N -0.44 -8.86 10.49 -9.06 -0.10 -8.96 16 15 C 0.03 0.46 7.32 -81.99 -0.60 -0.14 16 16 C 0.06 1.22 7.32 -81.99 -0.60 0.62 16 17 N -0.44 -10.02 10.42 -5.33 -0.06 -10.08 16 18 C -0.07 -0.87 6.77 -26.86 -0.18 -1.05 16 19 C -0.12 -1.20 7.08 -25.32 -0.18 -1.38 16 20 C -0.06 -0.74 6.77 -26.86 -0.18 -0.92 16 21 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 22 H 0.31 6.76 7.25 -39.29 -0.28 6.48 16 23 H 0.36 9.01 7.09 -39.29 -0.28 8.73 16 24 H 0.17 3.25 6.51 -52.48 -0.34 2.91 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 254.92 15.07 3.84 3.84 Total: -1.00 -29.67 254.92 -7.17 -36.84 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.41 Total: 11.87 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.02 Total: -5.88 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.43 Total: -62.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.67 -7.17 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260480816.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.958 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds