Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50693 * 109.47337 * 120.00737 * 2 1 3 5 5 H 1.08004 * 120.00241 * 114.48759 * 4 2 1 6 6 C 1.37875 * 119.99877 * 294.48837 * 4 2 1 7 7 N 1.31521 * 119.99996 * 164.73542 * 6 4 2 8 8 Si 1.86800 * 120.00017 * 344.73280 * 6 4 2 9 9 H 1.48502 * 109.47316 * 270.00116 * 8 6 4 10 10 H 1.48493 * 109.47133 * 30.00185 * 8 6 4 11 11 H 1.48501 * 109.46916 * 150.00203 * 8 6 4 12 12 C 1.50709 * 109.46946 * 240.00585 * 2 1 3 13 13 C 1.38354 * 119.85429 * 299.72886 * 12 2 1 14 14 C 1.37955 * 120.14850 * 179.72412 * 13 12 2 15 15 C 1.39579 * 119.84653 * 0.54335 * 14 13 12 16 16 C 1.47847 * 120.14249 * 179.70495 * 15 14 13 17 17 N 1.34776 * 120.00194 * 0.02562 * 16 15 14 18 18 O 1.21556 * 119.99968 * 180.02562 * 16 15 14 19 19 C 1.39575 * 119.71598 * 359.72912 * 15 14 13 20 20 C 1.37962 * 119.84656 * 359.97438 * 19 15 14 21 21 H 1.08997 * 109.47416 * 53.77759 * 1 2 3 22 22 H 1.09003 * 109.47056 * 173.77680 * 1 2 3 23 23 H 1.09000 * 109.47354 * 293.77596 * 1 2 3 24 24 H 0.96996 * 119.99944 * 354.89624 * 7 6 4 25 25 H 1.08009 * 119.92771 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.07842 * 180.24601 * 14 13 12 27 27 H 0.97002 * 119.99994 * 0.02562 * 17 16 15 28 28 H 0.96998 * 120.00046 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.07709 * 179.97438 * 19 15 14 30 30 H 1.08003 * 119.92552 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5779 -1.6376 1.1336 6 6 1.7955 -0.1771 2.4794 7 7 1.9572 -0.9195 3.5530 8 14 1.2451 1.6001 2.6471 9 1 2.4365 2.4778 2.7713 10 1 0.4648 1.9920 1.4460 11 1 0.3964 1.7433 3.8572 12 6 2.0323 -0.7103 -1.2306 13 6 1.7008 -2.0365 -1.4439 14 6 2.1526 -2.6910 -2.5711 15 6 2.9552 -2.0155 -3.4918 16 6 3.4484 -2.7124 -4.6988 17 7 3.1228 -4.0027 -4.9123 18 8 4.1476 -2.1217 -5.4987 19 6 3.2906 -0.6792 -3.2679 20 6 2.8271 -0.0348 -2.1395 21 1 -0.3634 0.6072 -0.8290 22 1 -0.3633 -1.0216 -0.1114 23 1 -0.3634 0.4143 0.9404 24 1 2.1708 -1.8614 3.4636 25 1 1.0836 -2.5595 -0.7282 26 1 1.8899 -3.7251 -2.7384 27 1 2.5645 -4.4740 -4.2742 28 1 3.4466 -4.4601 -5.7040 29 1 3.9116 -0.1510 -3.9762 30 1 3.0855 0.9993 -1.9652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = -29.349814 kcal Electronic energy + Delta-G solvation = -14125.331916 eV Core-core repulsion = 11691.735920 eV Total energy + Delta-G solvation = -2433.595996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83919 -38.15293 -34.58725 -33.69229 -31.77490 -30.48731 -29.03779 -24.88694 -23.76095 -22.24390 -20.84459 -19.43887 -18.01308 -17.48306 -16.64844 -15.25861 -14.74283 -14.60038 -14.25416 -13.86422 -13.42583 -12.94485 -12.80846 -12.36571 -12.31474 -11.71628 -11.21003 -10.78197 -10.64374 -10.37378 -10.01344 -9.84478 -9.72295 -9.61692 -8.97842 -8.57220 -8.37914 -8.16041 -6.50013 -4.15872 1.27031 1.82085 3.14177 3.37419 3.39885 3.54383 3.59007 4.30222 4.44825 4.99601 5.11295 5.20536 5.34912 5.62455 5.81637 5.94436 6.20770 6.25968 6.42089 6.55587 6.61484 6.64417 6.78037 6.82409 6.95431 7.11539 7.33922 7.39970 7.47455 7.98362 8.30706 8.30804 8.81236 9.52216 10.86773 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053772 B = 0.006772 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.590226 B = 4133.684235 C = 4308.239184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.038 3.962 3 H 0.033 0.967 4 C -0.594 4.594 5 H 0.059 0.941 6 C 0.034 3.966 7 N -0.905 5.905 8 Si 1.041 2.959 9 H -0.286 1.286 10 H -0.269 1.269 11 H -0.286 1.286 12 C 0.007 3.993 13 C -0.120 4.120 14 C -0.088 4.088 15 C -0.175 4.175 16 C 0.569 3.431 17 N -0.856 5.856 18 O -0.553 6.553 19 C -0.058 4.058 20 C -0.143 4.143 21 H 0.025 0.975 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.269 0.731 25 H 0.129 0.871 26 H 0.116 0.884 27 H 0.401 0.599 28 H 0.400 0.600 29 H 0.127 0.873 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 -3.208 -11.870 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.019 3.981 3 H 0.051 0.949 4 C -0.632 4.632 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.869 3.131 9 H -0.213 1.213 10 H -0.195 1.195 11 H -0.212 1.212 12 C 0.007 3.993 13 C -0.138 4.138 14 C -0.107 4.107 15 C -0.178 4.178 16 C 0.357 3.643 17 N -0.420 5.420 18 O -0.432 6.432 19 C -0.077 4.077 20 C -0.161 4.161 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.147 0.853 26 H 0.134 0.866 27 H 0.230 0.770 28 H 0.230 0.770 29 H 0.145 0.855 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.776 -1.517 -11.147 11.389 hybrid contribution 0.299 -1.811 -1.011 2.096 sum -1.477 -3.328 -12.158 12.691 Atomic orbital electron populations 1.22188 0.97797 1.00028 0.99614 1.18362 0.92540 0.95862 0.91323 0.94888 1.21936 1.40208 1.10693 0.90316 0.92264 1.25771 0.94127 1.05338 0.91903 1.70812 1.43943 1.08296 1.30762 0.84139 0.77278 0.75610 0.76067 1.21261 1.19488 1.21209 1.20635 0.90977 0.93658 0.94056 1.21023 1.01186 0.94902 0.96667 1.21177 0.96609 0.98714 0.94182 1.19603 1.05503 0.95934 0.96764 1.18428 0.78858 0.81498 0.85481 1.43767 1.56285 1.13183 1.28724 1.90764 1.38605 1.66453 1.47336 1.21137 0.96920 0.92949 0.96660 1.21151 0.99943 1.00536 0.94450 0.95597 0.93580 0.92853 0.92134 0.85313 0.86586 0.76964 0.76973 0.85511 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.39 37.16 0.31 -2.54 16 2 C 0.04 0.85 2.03 -92.92 -0.19 0.67 16 3 H 0.03 0.74 6.50 -51.93 -0.34 0.40 16 4 C -0.59 -15.78 8.54 -34.44 -0.29 -16.07 16 5 H 0.06 1.71 7.76 -52.48 -0.41 1.30 16 6 C 0.03 0.93 5.33 -17.82 -0.09 0.84 16 7 N -0.90 -26.88 13.70 55.43 0.76 -26.12 16 8 Si 1.04 24.06 26.17 -169.99 -4.45 19.61 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.27 -5.63 5.53 56.52 0.31 -5.32 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.01 0.14 4.75 -104.53 -0.50 -0.36 16 13 C -0.12 -2.17 8.55 -39.64 -0.34 -2.51 16 14 C -0.09 -1.34 9.54 -39.18 -0.37 -1.71 16 15 C -0.17 -2.82 5.87 -104.97 -0.62 -3.44 16 16 C 0.57 8.65 8.05 -12.33 -0.10 8.55 16 17 N -0.86 -8.81 8.82 30.53 0.27 -8.54 16 18 O -0.55 -10.24 17.18 5.32 0.09 -10.15 16 19 C -0.06 -0.98 9.60 -39.18 -0.38 -1.36 16 20 C -0.14 -2.58 9.65 -39.64 -0.38 -2.96 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.90 7.19 -51.93 -0.37 0.53 16 23 H 0.05 1.13 5.06 -51.93 -0.26 0.87 16 24 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 25 H 0.13 2.35 7.54 -52.48 -0.40 1.96 16 26 H 0.12 1.30 6.41 -52.49 -0.34 0.97 16 27 H 0.40 3.15 6.86 -40.82 -0.28 2.87 16 28 H 0.40 3.35 8.93 -40.82 -0.36 2.99 16 29 H 0.13 2.03 7.65 -52.49 -0.40 1.63 16 30 H 0.12 2.05 7.94 -52.48 -0.42 1.63 16 LS Contribution 254.63 15.07 3.84 3.84 Total: -1.00 -31.45 254.63 -5.68 -37.13 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.24 Total: 5.12 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.95 Total: -20.89 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 1.03 Total: -34.67 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.45 Total: 19.61 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.45 -5.68 -37.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.777 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds