Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47162 * 2 1 4 4 C 1.50693 * 109.47337 * 120.00737 * 2 1 3 5 5 H 1.08004 * 120.00241 * 114.48759 * 4 2 1 6 6 C 1.37875 * 119.99877 * 294.48837 * 4 2 1 7 7 N 1.31521 * 119.99996 * 164.73542 * 6 4 2 8 8 Si 1.86800 * 120.00017 * 344.73280 * 6 4 2 9 9 H 1.48502 * 109.47316 * 270.00116 * 8 6 4 10 10 H 1.48493 * 109.47133 * 30.00185 * 8 6 4 11 11 H 1.48501 * 109.46916 * 150.00203 * 8 6 4 12 12 C 1.50709 * 109.46946 * 240.00585 * 2 1 3 13 13 C 1.38354 * 119.85429 * 299.72886 * 12 2 1 14 14 C 1.37955 * 120.14850 * 179.72412 * 13 12 2 15 15 C 1.39579 * 119.84653 * 0.54335 * 14 13 12 16 16 C 1.47847 * 120.14249 * 179.70495 * 15 14 13 17 17 N 1.34776 * 120.00194 * 0.02562 * 16 15 14 18 18 O 1.21556 * 119.99968 * 180.02562 * 16 15 14 19 19 C 1.39575 * 119.71598 * 359.72912 * 15 14 13 20 20 C 1.37962 * 119.84656 * 359.97438 * 19 15 14 21 21 H 1.08997 * 109.47416 * 53.77759 * 1 2 3 22 22 H 1.09003 * 109.47056 * 173.77680 * 1 2 3 23 23 H 1.09000 * 109.47354 * 293.77596 * 1 2 3 24 24 H 0.96996 * 119.99944 * 354.89624 * 7 6 4 25 25 H 1.08009 * 119.92771 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.07842 * 180.24601 * 14 13 12 27 27 H 0.97002 * 119.99994 * 0.02562 * 17 16 15 28 28 H 0.96998 * 120.00046 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.07709 * 179.97438 * 19 15 14 30 30 H 1.08003 * 119.92552 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5779 -1.6376 1.1336 6 6 1.7955 -0.1771 2.4794 7 7 1.9572 -0.9195 3.5530 8 14 1.2451 1.6001 2.6471 9 1 2.4365 2.4778 2.7713 10 1 0.4648 1.9920 1.4460 11 1 0.3964 1.7433 3.8572 12 6 2.0323 -0.7103 -1.2306 13 6 1.7008 -2.0365 -1.4439 14 6 2.1526 -2.6910 -2.5711 15 6 2.9552 -2.0155 -3.4918 16 6 3.4484 -2.7124 -4.6988 17 7 3.1228 -4.0027 -4.9123 18 8 4.1476 -2.1217 -5.4987 19 6 3.2906 -0.6792 -3.2679 20 6 2.8271 -0.0348 -2.1395 21 1 -0.3634 0.6072 -0.8290 22 1 -0.3633 -1.0216 -0.1114 23 1 -0.3634 0.4143 0.9404 24 1 2.1708 -1.8614 3.4636 25 1 1.0836 -2.5595 -0.7282 26 1 1.8899 -3.7251 -2.7384 27 1 2.5645 -4.4740 -4.2742 28 1 3.4466 -4.4601 -5.7040 29 1 3.9116 -0.1510 -3.9762 30 1 3.0855 0.9993 -1.9652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = -51.932844 kcal Electronic energy + Delta-G solvation = -14126.311190 eV Core-core repulsion = 11691.735920 eV Total energy + Delta-G solvation = -2434.575270 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.10545 -39.50347 -36.29399 -34.84774 -33.66417 -31.80888 -30.51975 -26.75296 -25.25960 -23.58303 -22.27466 -20.96513 -19.47415 -19.13160 -17.79394 -16.79532 -16.01633 -15.82012 -15.69520 -15.48205 -15.01611 -14.49295 -14.36549 -13.97988 -13.82243 -13.39471 -12.87725 -12.42363 -12.26779 -11.90403 -11.66240 -11.35488 -11.15481 -10.97649 -10.74639 -10.46488 -9.89111 -9.62992 -8.66327 -6.33509 -0.05899 0.48022 1.52531 1.55946 1.74139 1.87925 2.53587 2.55399 2.95472 3.10794 3.84367 3.91431 4.05791 4.15803 4.48951 4.56522 4.67621 4.78546 4.92218 5.01727 5.12630 5.24945 5.31336 5.44553 5.56895 5.81835 5.87104 5.98304 6.06528 6.13740 6.39068 6.60413 7.27229 7.42734 8.67844 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053772 B = 0.006772 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.590226 B = 4133.684235 C = 4308.239184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.035 3.965 3 H 0.037 0.963 4 C -0.587 4.587 5 H 0.022 0.978 6 C -0.019 4.019 7 N -0.942 5.942 8 Si 1.079 2.921 9 H -0.278 1.278 10 H -0.232 1.232 11 H -0.290 1.290 12 C -0.023 4.023 13 C -0.134 4.134 14 C -0.072 4.072 15 C -0.175 4.175 16 C 0.569 3.431 17 N -0.829 5.829 18 O -0.590 6.590 19 C -0.064 4.064 20 C -0.146 4.146 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.253 0.747 25 H 0.120 0.880 26 H 0.160 0.840 27 H 0.416 0.584 28 H 0.414 0.586 29 H 0.134 0.866 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -3.131 -13.864 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.055 0.945 4 C -0.625 4.625 5 H 0.040 0.960 6 C -0.217 4.217 7 N -0.578 5.578 8 Si 0.900 3.100 9 H -0.204 1.204 10 H -0.155 1.155 11 H -0.216 1.216 12 C -0.023 4.023 13 C -0.152 4.152 14 C -0.090 4.090 15 C -0.178 4.178 16 C 0.356 3.644 17 N -0.393 5.393 18 O -0.472 6.472 19 C -0.083 4.083 20 C -0.164 4.164 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.138 0.862 26 H 0.177 0.823 27 H 0.248 0.752 28 H 0.246 0.754 29 H 0.152 0.848 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.461 -1.494 -13.170 13.481 hybrid contribution 0.559 -1.988 -0.491 2.123 sum -1.902 -3.481 -13.662 14.226 Atomic orbital electron populations 1.22099 0.96218 1.00786 1.00274 1.18300 0.93823 0.95660 0.90592 0.94505 1.22109 1.38634 1.09292 0.92434 0.95993 1.27139 0.94008 1.08681 0.91822 1.70943 1.47185 1.07711 1.32002 0.83706 0.77667 0.71240 0.77381 1.20421 1.15549 1.21637 1.20535 0.92990 0.94676 0.94099 1.21064 1.01802 0.94575 0.97731 1.21474 0.94870 1.00383 0.92323 1.19860 1.04883 0.95833 0.97218 1.18301 0.78651 0.82680 0.84727 1.43532 1.55033 1.11491 1.29269 1.90758 1.40436 1.67643 1.48347 1.21293 0.96935 0.93662 0.96418 1.21238 0.99551 1.01182 0.94463 0.92795 0.93436 0.93676 0.93835 0.86192 0.82306 0.75179 0.75383 0.84788 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.39 71.98 0.60 -4.75 16 2 C 0.04 1.55 2.03 -12.29 -0.02 1.52 16 3 H 0.04 1.58 6.50 -2.39 -0.02 1.57 16 4 C -0.59 -31.73 8.54 25.60 0.22 -31.51 16 5 H 0.02 1.31 7.76 -2.91 -0.02 1.29 16 6 C -0.02 -1.06 5.33 84.65 0.45 -0.61 16 7 N -0.94 -57.81 13.70 21.45 0.29 -57.51 16 8 Si 1.08 47.96 26.17 68.60 1.80 49.76 16 9 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.23 -8.86 5.53 99.48 0.55 -8.31 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 C -0.02 -0.88 4.75 -19.81 -0.09 -0.97 16 13 C -0.13 -4.68 8.55 22.23 0.19 -4.49 16 14 C -0.07 -1.99 9.54 22.53 0.21 -1.77 16 15 C -0.17 -5.20 5.87 -20.09 -0.12 -5.32 16 16 C 0.57 15.70 8.05 86.79 0.70 16.40 16 17 N -0.83 -13.95 8.82 -175.60 -1.55 -15.50 16 18 O -0.59 -20.71 17.18 -3.89 -0.07 -20.77 16 19 C -0.06 -2.07 9.60 22.53 0.22 -1.86 16 20 C -0.15 -5.09 9.65 22.23 0.21 -4.87 16 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.05 1.81 7.19 -2.39 -0.02 1.79 16 23 H 0.04 1.81 5.06 -2.39 -0.01 1.80 16 24 H 0.25 15.72 8.73 -92.71 -0.81 14.91 16 25 H 0.12 4.35 7.54 -2.91 -0.02 4.33 16 26 H 0.16 2.88 6.41 -2.91 -0.02 2.86 16 27 H 0.42 4.65 6.86 -92.71 -0.64 4.01 16 28 H 0.41 5.40 8.93 -92.71 -0.83 4.58 16 29 H 0.13 4.10 7.65 -2.91 -0.02 4.08 16 30 H 0.14 4.26 7.94 -2.91 -0.02 4.24 16 Total: -1.00 -69.47 254.63 2.56 -66.91 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.48 Total: 15.35 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 2.57 Total: -38.23 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.26 Total: -73.01 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.07 Total: -20.77 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.80 Total: 49.76 kcal Total: -69.47 2.56 -66.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.977 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds