Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 13 13 C 1.38231 * 120.45708 * 59.99755 * 12 2 1 14 14 N 1.31893 * 120.92738 * 179.97438 * 13 12 2 15 15 C 1.31760 * 121.69987 * 0.02562 * 14 13 12 16 16 C 1.38565 * 120.47519 * 0.02562 * 15 14 13 17 17 C 1.38205 * 119.53243 * 359.73385 * 16 15 14 18 18 C 1.50931 * 107.47686 * 179.97438 * 16 15 14 19 19 O 1.43970 * 105.90584 * 342.35273 * 18 16 15 20 20 C 1.43917 * 104.93638 * 28.40997 * 19 18 16 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.53762 * 359.97438 * 13 12 2 26 26 H 1.07998 * 120.85931 * 180.28892 * 17 16 15 27 27 H 1.09000 * 110.16341 * 223.24773 * 18 16 15 28 28 H 1.08995 * 110.22507 * 101.49460 * 18 16 15 29 29 H 1.09008 * 110.14479 * 212.39652 * 20 19 18 30 30 H 1.09005 * 110.20612 * 90.70667 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 6 1.7041 -2.0337 1.4586 14 7 2.1390 -2.6645 2.5321 15 6 2.8986 -2.0659 3.4269 16 6 3.2658 -0.7398 3.2628 17 6 2.8339 -0.0463 2.1481 18 6 4.1239 -0.3576 4.4441 19 8 3.8752 -1.3553 5.4518 20 6 3.5228 -2.5428 4.7190 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7083 1.1609 -3.4845 25 1 1.0828 -2.5583 0.7479 26 1 3.1111 0.9864 1.9964 27 1 3.8386 0.6278 4.8126 28 1 5.1768 -0.3626 4.1623 29 1 2.8048 -3.1350 5.2866 30 1 4.4141 -3.1343 4.5095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -12.419801 kcal Electronic energy + Delta-G solvation = -14349.539222 eV Core-core repulsion = 11916.677367 eV Total energy + Delta-G solvation = -2432.861856 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.69293 -37.94672 -34.72720 -32.29667 -31.56789 -29.35457 -27.78524 -25.26930 -24.78086 -22.59989 -21.63837 -19.73642 -16.92616 -16.47980 -16.30842 -15.60538 -15.39295 -14.62608 -13.82679 -13.41939 -13.25684 -12.70230 -12.54401 -12.37676 -12.10008 -11.92945 -11.45502 -11.01215 -10.96012 -10.49935 -10.30065 -10.09028 -9.81268 -9.36329 -8.97008 -8.79560 -8.45079 -7.99844 -6.12723 -4.21040 1.52965 1.79315 3.25513 3.30363 3.33456 3.97916 4.11270 4.20285 4.36549 4.68526 5.18661 5.21310 5.40588 5.44957 5.55528 5.62249 5.71221 5.83806 6.10356 6.16368 6.40659 6.67568 6.70716 6.78801 6.96542 7.06849 7.28329 7.55597 7.76288 7.94759 8.22513 8.43240 8.80937 9.44808 10.92819 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048829 B = 0.007076 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.286665 B = 3956.055751 C = 4062.866235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.038 0.962 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.070 4.070 13 C 0.108 3.892 14 N -0.470 5.470 15 C 0.051 3.949 16 C -0.193 4.193 17 C -0.065 4.065 18 C 0.098 3.902 19 O -0.363 6.363 20 C 0.109 3.891 21 H 0.089 0.911 22 H 0.031 0.969 23 H 0.009 0.991 24 H 0.263 0.737 25 H 0.162 0.838 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -2.086 9.513 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.056 0.944 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.072 4.072 13 C -0.048 4.048 14 N -0.179 5.179 15 C -0.088 4.088 16 C -0.195 4.195 17 C -0.091 4.091 18 C 0.021 3.979 19 O -0.281 6.281 20 C 0.032 3.968 21 H 0.108 0.892 22 H 0.050 0.950 23 H 0.029 0.971 24 H 0.073 0.927 25 H 0.179 0.821 26 H 0.149 0.851 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.364 -2.814 9.741 10.683 hybrid contribution 0.549 0.457 -1.367 1.542 sum 3.913 -2.357 8.374 9.539 Atomic orbital electron populations 1.21816 0.97164 0.99587 1.00591 1.17863 0.93109 0.95490 0.87759 0.94353 1.21026 1.31869 1.12680 0.89742 0.92444 1.24943 0.94820 0.94911 0.99002 1.69862 1.36192 1.22689 1.23821 0.86601 0.79253 0.79849 0.82033 1.20072 1.21147 1.20235 1.21710 0.93671 0.95226 0.96575 1.22676 0.97355 0.92189 0.92603 1.66698 1.09577 1.39297 1.02322 1.21982 0.97554 0.92034 0.97262 1.21748 1.01887 0.97438 0.98434 1.20831 0.96280 1.00098 0.91846 1.21564 0.97739 0.93020 0.85545 1.89070 1.89760 1.20958 1.28315 1.21460 0.98881 0.87985 0.88484 0.89241 0.95030 0.97144 0.92673 0.82059 0.85138 0.88646 0.90645 0.88180 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.79 37.16 0.33 -2.75 16 2 C 0.08 1.83 2.50 -92.92 -0.23 1.59 16 3 H 0.04 0.97 7.94 -51.93 -0.41 0.56 16 4 C -0.52 -13.45 8.26 -34.44 -0.28 -13.73 16 5 H 0.06 1.50 7.61 -52.49 -0.40 1.10 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.07 -1.47 4.75 -104.43 -0.50 -1.97 16 13 C 0.11 2.21 9.90 -17.53 -0.17 2.03 16 14 N -0.47 -9.21 10.36 -9.23 -0.10 -9.31 16 15 C 0.05 0.90 7.51 -82.25 -0.62 0.28 16 16 C -0.19 -3.28 6.34 -104.40 -0.66 -3.94 16 17 C -0.07 -1.21 9.80 -39.40 -0.39 -1.60 16 18 C 0.10 1.33 7.63 36.12 0.28 1.60 16 19 O -0.36 -5.24 11.72 -35.23 -0.41 -5.65 16 20 C 0.11 1.53 7.63 36.26 0.28 1.80 16 21 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 22 H 0.03 0.69 7.41 -51.93 -0.39 0.30 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.16 3.24 7.59 -52.49 -0.40 2.84 16 26 H 0.13 2.18 8.01 -52.49 -0.42 1.76 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 256.30 15.07 3.86 3.86 Total: -1.00 -28.06 256.30 -6.69 -34.74 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.58 Total: -0.61 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.07 Total: -15.03 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.53 Total: -32.89 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.41 Total: -5.65 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.06 -6.69 -34.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.324 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds