Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 13 13 C 1.38231 * 120.45708 * 59.99755 * 12 2 1 14 14 N 1.31893 * 120.92738 * 179.97438 * 13 12 2 15 15 C 1.31760 * 121.69987 * 0.02562 * 14 13 12 16 16 C 1.38565 * 120.47519 * 0.02562 * 15 14 13 17 17 C 1.38205 * 119.53243 * 359.73385 * 16 15 14 18 18 C 1.50931 * 107.47686 * 179.97438 * 16 15 14 19 19 O 1.43970 * 105.90584 * 342.35273 * 18 16 15 20 20 C 1.43917 * 104.93638 * 28.40997 * 19 18 16 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.53762 * 359.97438 * 13 12 2 26 26 H 1.07998 * 120.85931 * 180.28892 * 17 16 15 27 27 H 1.09000 * 110.16341 * 223.24773 * 18 16 15 28 28 H 1.08995 * 110.22507 * 101.49460 * 18 16 15 29 29 H 1.09008 * 110.14479 * 212.39652 * 20 19 18 30 30 H 1.09005 * 110.20612 * 90.70667 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 6 1.7041 -2.0337 1.4586 14 7 2.1390 -2.6645 2.5321 15 6 2.8986 -2.0659 3.4269 16 6 3.2658 -0.7398 3.2628 17 6 2.8339 -0.0463 2.1481 18 6 4.1239 -0.3576 4.4441 19 8 3.8752 -1.3553 5.4518 20 6 3.5228 -2.5428 4.7190 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7083 1.1609 -3.4845 25 1 1.0828 -2.5583 0.7479 26 1 3.1111 0.9864 1.9964 27 1 3.8386 0.6278 4.8126 28 1 5.1768 -0.3626 4.1623 29 1 2.8048 -3.1350 5.2866 30 1 4.4141 -3.1343 4.5095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260533530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -29.462844 kcal Electronic energy + Delta-G solvation = -14350.278264 eV Core-core repulsion = 11916.677367 eV Total energy + Delta-G solvation = -2433.600897 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02940 -39.25737 -36.50139 -33.94370 -33.12198 -30.88533 -29.04819 -27.25409 -26.16797 -24.22258 -22.92763 -21.39797 -18.60444 -17.84182 -17.66704 -17.09455 -16.89786 -16.26797 -15.08389 -14.94766 -14.82514 -14.41306 -13.93461 -13.68017 -13.52609 -13.44931 -13.10643 -12.84800 -12.81264 -12.29064 -12.17776 -11.66241 -11.25023 -11.15465 -10.57192 -10.45279 -10.22422 -9.46930 -8.13921 -6.28400 0.08664 0.31501 1.42160 1.42965 1.50555 2.40391 2.75815 2.80440 2.89764 3.14468 3.44121 3.94644 4.11988 4.20476 4.39276 4.42153 4.50860 4.57853 4.70659 4.74314 4.90154 4.99757 5.08842 5.16860 5.31685 5.52908 5.56940 5.74724 5.84997 6.00644 6.26919 6.78477 6.95667 7.40199 8.90448 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048829 B = 0.007076 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.286665 B = 3956.055751 C = 4062.866235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.080 3.920 3 H 0.016 0.984 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.093 4.093 13 C 0.095 3.905 14 N -0.482 5.482 15 C 0.043 3.957 16 C -0.191 4.191 17 C -0.069 4.069 18 C 0.101 3.899 19 O -0.367 6.367 20 C 0.113 3.887 21 H 0.064 0.936 22 H 0.033 0.967 23 H 0.025 0.975 24 H 0.264 0.736 25 H 0.154 0.846 26 H 0.145 0.855 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -2.549 10.871 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 H 0.034 0.966 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.200 1.200 12 C -0.095 4.095 13 C -0.060 4.060 14 N -0.192 5.192 15 C -0.097 4.097 16 C -0.193 4.193 17 C -0.094 4.094 18 C 0.025 3.975 19 O -0.285 6.285 20 C 0.036 3.964 21 H 0.083 0.917 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.163 0.837 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.618 -3.282 11.102 12.464 hybrid contribution 0.196 0.603 -1.682 1.797 sum 4.813 -2.679 9.421 10.913 Atomic orbital electron populations 1.21665 0.96981 0.99534 1.00055 1.17675 0.93333 0.94274 0.88624 0.96578 1.21292 1.31697 1.12552 0.91045 0.93171 1.25643 0.95060 0.95581 1.01595 1.69976 1.37078 1.23769 1.24326 0.85700 0.78690 0.78903 0.78934 1.19661 1.20691 1.19973 1.21437 0.95800 0.95662 0.96604 1.22538 0.98063 0.92096 0.93283 1.66716 1.10403 1.39544 1.02531 1.22768 0.96344 0.92724 0.97901 1.22147 1.01411 0.97067 0.98662 1.20984 0.95624 1.00860 0.91957 1.21767 0.98222 0.93727 0.83816 1.89078 1.89839 1.21196 1.28408 1.21652 0.99964 0.88145 0.86664 0.91674 0.94768 0.95589 0.92677 0.82845 0.83711 0.86410 0.88243 0.86522 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.79 71.98 0.63 -5.22 16 2 C 0.08 3.89 2.50 -12.28 -0.03 3.86 16 3 H 0.02 0.84 7.94 -2.39 -0.02 0.82 16 4 C -0.53 -28.05 8.26 25.60 0.21 -27.84 16 5 H 0.05 2.67 7.61 -2.91 -0.02 2.65 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -50.63 11.32 21.45 0.24 -50.39 16 8 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 C -0.09 -3.94 4.75 -19.74 -0.09 -4.03 16 13 C 0.10 3.93 9.90 84.68 0.84 4.77 16 14 N -0.48 -18.50 10.36 -183.13 -1.90 -20.39 16 15 C 0.04 1.41 7.51 42.81 0.32 1.73 16 16 C -0.19 -6.03 6.34 -19.72 -0.13 -6.15 16 17 C -0.07 -2.49 9.80 22.39 0.22 -2.27 16 18 C 0.10 2.33 7.63 71.31 0.54 2.88 16 19 O -0.37 -9.14 11.72 -148.98 -1.75 -10.89 16 20 C 0.11 2.76 7.63 71.40 0.54 3.30 16 21 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 22 H 0.03 1.53 7.41 -2.39 -0.02 1.51 16 23 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 25 H 0.15 6.36 7.59 -2.91 -0.02 6.34 16 26 H 0.15 4.68 8.01 -2.91 -0.02 4.65 16 27 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -59.65 256.30 3.27 -56.38 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.13 Total: 8.23 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.51 Total: -27.41 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.65 Total: -70.78 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.75 Total: -10.89 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -59.65 3.27 -56.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.919 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds