Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31736 * 119.07588 * 2 1 4 4 C 1.33033 * 120.68979 * 180.02562 * 3 2 1 5 5 N 1.38523 * 120.54120 * 179.97438 * 4 3 2 6 6 C 1.36933 * 119.99816 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00505 * 0.02562 * 6 5 4 8 8 C 1.38854 * 119.99533 * 179.97438 * 6 5 4 9 9 N 1.31532 * 120.00152 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99853 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47010 * 60.00009 * 10 8 6 12 12 H 1.48499 * 109.47089 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47057 * 300.00331 * 10 8 6 14 14 C 1.39707 * 118.92015 * 359.97438 * 4 3 2 15 15 C 1.38131 * 118.32448 * 0.02562 * 14 4 3 16 16 C 1.50701 * 120.40522 * 180.02562 * 15 14 4 17 17 C 1.53005 * 117.49637 * 343.59942 * 16 15 14 18 18 C 1.53001 * 117.50024 * 274.97729 * 16 15 14 19 19 N 1.31792 * 119.08021 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.47100 * 269.97756 * 1 2 3 21 21 H 1.08993 * 109.47004 * 29.98229 * 1 2 3 22 22 H 1.08997 * 109.46654 * 149.98036 * 1 2 3 23 23 H 0.96996 * 119.99724 * 0.02562 * 5 4 3 24 24 H 0.97004 * 119.99803 * 179.97438 * 9 8 6 25 25 H 1.08008 * 120.83756 * 180.02562 * 14 4 3 26 26 H 1.09001 * 115.55207 * 129.30376 * 16 15 14 27 27 H 1.08990 * 117.49591 * 359.97438 * 17 16 15 28 28 H 1.08999 * 117.49451 * 145.02132 * 17 16 15 29 29 H 1.08994 * 117.50162 * 214.97567 * 18 16 15 30 30 H 1.08997 * 117.49537 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1472 1.1513 0.0000 4 6 3.4770 1.1888 -0.0005 5 7 4.1471 2.4012 -0.0010 6 6 5.5161 2.4268 -0.0021 7 1 6.0736 1.5018 -0.0029 8 6 6.1877 3.6421 -0.0032 9 7 5.5088 4.7687 -0.0027 10 14 8.0554 3.6771 -0.0053 11 1 8.5620 2.9862 -1.2183 12 1 8.5241 5.0862 -0.0056 13 1 8.5649 2.9867 1.2068 14 6 4.1868 -0.0145 -0.0005 15 6 3.4725 -1.1968 -0.0005 16 6 4.1905 -2.5218 0.0001 17 6 5.6719 -2.5226 -0.3826 18 6 4.6311 -3.0871 -1.3516 19 7 2.1476 -1.1518 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3632 -0.8898 -0.5141 23 1 3.6464 3.2320 -0.0007 24 1 5.9780 5.6177 -0.0030 25 1 5.2669 -0.0202 -0.0005 26 1 3.8665 -3.2317 0.7611 27 1 6.1269 -1.5650 -0.6351 28 1 6.3228 -3.2332 0.1268 29 1 4.5974 -4.1690 -1.4798 30 1 4.4013 -2.5009 -2.2413 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533577.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = 65.412978 kcal Electronic energy + Delta-G solvation = -14199.992145 eV Core-core repulsion = 11802.798123 eV Total energy + Delta-G solvation = -2397.194022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88044 -36.91372 -35.77854 -32.57065 -31.83107 -30.09764 -27.39159 -25.14423 -24.10977 -22.18901 -21.07456 -19.99974 -18.14151 -16.67441 -16.35018 -14.99981 -14.63907 -14.19449 -14.06069 -13.81836 -13.49097 -12.88369 -12.31943 -11.93330 -11.70764 -11.54114 -11.36342 -11.26355 -10.92337 -10.76715 -10.52515 -10.23678 -10.12321 -9.41452 -9.20825 -8.56354 -8.03670 -7.37917 -6.74198 -3.99910 2.13715 2.45424 3.07340 3.09465 3.09739 3.88062 4.07926 4.59492 4.67583 4.80076 5.11284 5.15087 5.26560 5.38647 5.56136 5.83730 5.92252 6.05881 6.09650 6.18690 6.25965 6.34818 6.38281 6.48637 6.69485 6.88708 7.13391 7.44279 7.74069 8.17466 8.60813 9.10587 9.21986 9.63078 10.41542 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.025254 B = 0.009297 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.479399 B = 3011.114298 C = 4039.663503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.350 3.650 3 N -0.608 5.608 4 C 0.380 3.620 5 N -0.514 5.514 6 C -0.307 4.307 7 H 0.105 0.895 8 C 0.028 3.972 9 N -0.879 5.879 10 Si 0.937 3.063 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.269 1.269 14 C -0.304 4.304 15 C 0.213 3.787 16 C -0.095 4.095 17 C -0.175 4.175 18 C -0.165 4.165 19 N -0.606 5.606 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.405 0.595 24 H 0.280 0.720 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -8.861 -0.642 8.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.078 3.922 3 N -0.339 5.339 4 C 0.131 3.869 5 N -0.121 5.121 6 C -0.438 4.438 7 H 0.123 0.877 8 C -0.178 4.178 9 N -0.515 5.515 10 Si 0.762 3.238 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.194 1.194 14 C -0.335 4.335 15 C 0.075 3.925 16 C -0.114 4.114 17 C -0.213 4.213 18 C -0.202 4.202 19 N -0.333 5.333 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.241 0.759 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.132 0.868 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.133 -8.465 -0.640 8.564 hybrid contribution 1.668 0.613 0.053 1.778 sum 0.535 -7.851 -0.587 7.891 Atomic orbital electron populations 1.20350 0.87663 1.02678 1.02536 1.22386 0.96522 0.83272 0.89982 1.67577 1.08111 1.30646 1.27549 1.18348 0.87657 0.87054 0.93864 1.40765 1.06058 1.03906 1.61404 1.19717 0.80418 0.94686 1.49013 0.87732 1.25400 1.01468 0.94476 0.96433 1.69679 1.37297 0.98044 1.46450 0.85812 0.80782 0.77825 0.79339 1.19441 1.20455 1.19430 1.21531 1.01215 0.91984 1.18781 1.19982 0.89392 0.92204 0.90883 1.20648 0.95584 0.95593 0.99598 1.23059 0.91489 1.03287 1.03437 1.22883 1.03376 1.00320 0.93653 1.67757 1.08838 1.29601 1.27100 0.90917 0.90750 0.90744 0.75858 0.91027 0.85248 0.86771 0.88004 0.88592 0.88746 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.32 36.01 0.37 -0.81 16 2 C 0.35 7.48 7.64 -157.25 -1.20 6.28 16 3 N -0.61 -14.49 10.37 -9.94 -0.10 -14.60 16 4 C 0.38 9.39 7.68 -154.73 -1.19 8.20 16 5 N -0.51 -13.25 5.43 -10.98 -0.06 -13.31 16 6 C -0.31 -7.84 9.56 -15.05 -0.14 -7.99 16 7 H 0.11 2.53 5.73 -52.49 -0.30 2.23 16 8 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 9 N -0.88 -23.13 13.05 55.49 0.72 -22.41 16 10 Si 0.94 19.21 29.55 -169.99 -5.02 14.19 16 11 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 C -0.30 -6.86 8.65 -39.07 -0.34 -7.20 16 15 C 0.21 4.44 6.49 -82.31 -0.53 3.90 16 16 C -0.10 -1.57 6.25 -91.77 -0.57 -2.14 16 17 C -0.18 -2.48 9.82 -26.73 -0.26 -2.74 16 18 C -0.16 -2.32 10.23 -26.73 -0.27 -2.59 16 19 N -0.61 -12.99 10.27 -7.06 -0.07 -13.06 16 20 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.41 10.78 8.02 -40.82 -0.33 10.45 16 24 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.13 2.81 4.40 -52.48 -0.23 2.57 16 26 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 27 H 0.10 1.56 6.47 -51.93 -0.34 1.22 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -28.26 262.06 -8.11 -36.37 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -3.29 Total: 13.34 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.24 Total: -4.47 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.49 Total: -63.37 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.26 -8.11 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533577.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.782 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds