Wall clock time and date at job start Mon Mar 30 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47176 * 2 1 4 4 N 1.46899 * 109.46982 * 119.99593 * 2 1 3 5 5 C 1.47474 * 111.00375 * 164.93314 * 4 2 1 6 6 C 1.53510 * 87.93487 * 221.29539 * 5 4 2 7 7 C 1.52998 * 114.34573 * 139.67881 * 6 5 4 8 8 F 1.39901 * 109.47435 * 211.07663 * 7 6 5 9 9 F 1.39896 * 109.47208 * 331.07906 * 7 6 5 10 10 C 1.50706 * 109.46870 * 91.07704 * 7 6 5 11 11 H 1.07995 * 119.99976 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99647 * 180.02562 * 10 7 6 13 13 N 1.31511 * 120.00083 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99924 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46966 * 59.99928 * 14 12 10 16 16 H 1.48495 * 109.47126 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47010 * 300.00362 * 14 12 10 18 18 C 1.47482 * 111.00332 * 68.95950 * 4 2 1 19 19 H 1.08992 * 109.47377 * 300.00471 * 1 2 3 20 20 H 1.09004 * 109.46754 * 60.00612 * 1 2 3 21 21 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47642 * 239.99502 * 2 1 3 23 23 H 1.08992 * 109.47477 * 185.22088 * 3 2 1 24 24 H 1.09001 * 109.46779 * 305.21803 * 3 2 1 25 25 H 1.09007 * 109.47194 * 65.21407 * 3 2 1 26 26 H 1.09004 * 113.47615 * 336.06385 * 5 4 2 27 27 H 1.09005 * 113.48224 * 106.52715 * 5 4 2 28 28 H 1.08998 * 114.16876 * 272.37648 * 6 5 4 29 29 H 0.97007 * 119.99476 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.47466 * 253.47159 * 18 4 2 31 31 H 1.08998 * 113.47366 * 23.93526 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4492 -1.0300 1.0684 6 6 3.1300 -2.3885 1.7080 7 6 3.8647 -3.5719 1.0750 8 9 3.0710 -4.7198 1.1724 9 9 4.1211 -3.2950 -0.2721 10 6 5.1674 -3.7991 1.7979 11 1 5.4434 -3.1634 2.6261 12 6 6.0069 -4.8187 1.4017 13 7 5.6709 -5.5925 0.3927 14 14 7.6220 -5.1000 2.2971 15 1 7.3503 -5.3941 3.7272 16 1 8.3356 -6.2478 1.6821 17 1 8.4641 -3.8812 2.1937 18 6 1.7298 -2.1369 1.1314 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1259 1.4439 -0.0935 24 1 1.6023 1.9825 -0.8396 25 1 1.7549 1.9287 0.9330 26 1 3.7846 -1.1051 0.0340 27 1 4.1009 -0.4049 1.6791 28 1 3.1705 -2.3895 2.7972 29 1 6.2614 -6.3100 0.1143 30 1 0.9240 -2.4498 1.7954 31 1 1.6061 -2.5074 0.1138 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260605839.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:08 Heat of formation + Delta-G solvation = -78.809139 kcal Electronic energy + Delta-G solvation = -15699.771431 eV Core-core repulsion = 12845.634282 eV Total energy + Delta-G solvation = -2854.137149 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -46.86937 -44.86643 -39.63958 -34.05166 -32.73901 -28.77329 -27.48051 -25.79756 -24.89166 -22.41830 -19.93600 -18.94548 -17.18923 -16.12590 -15.68483 -15.24652 -14.66587 -14.18101 -13.99020 -13.64662 -13.42374 -12.46516 -12.07628 -11.98666 -11.83714 -11.78597 -11.70346 -11.26900 -11.21489 -11.03061 -10.97868 -10.81602 -10.43741 -10.27040 -9.97826 -9.86875 -8.83720 -8.81091 -8.43331 -6.24713 -4.51264 3.23480 3.27103 3.29682 4.22949 4.31547 4.86767 5.06248 5.08294 5.17885 5.28791 5.43582 5.63770 5.71533 5.77298 5.84792 5.94500 5.97558 6.04585 6.19305 6.23868 6.28236 6.31575 6.59131 6.65626 6.83235 7.43612 7.48488 7.61427 7.67045 8.56706 9.29321 10.80096 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.052484 B = 0.008172 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.363519 B = 3425.346304 C = 3625.427910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 C -0.139 4.139 4 N -0.471 5.471 5 C 0.016 3.984 6 C -0.142 4.142 7 C 0.407 3.593 8 F -0.224 7.224 9 F -0.225 7.225 10 C -0.590 4.590 11 H 0.078 0.922 12 C 0.084 3.916 13 N -0.856 5.856 14 Si 0.909 3.091 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.005 3.995 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.269 0.731 30 H 0.081 0.919 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 8.922 -0.071 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.197 4.197 4 N -0.194 5.194 5 C -0.112 4.112 6 C -0.162 4.162 7 C 0.371 3.629 8 F -0.205 7.205 9 F -0.206 7.206 10 C -0.628 4.628 11 H 0.096 0.904 12 C -0.125 4.125 13 N -0.489 5.489 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.124 4.124 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.102 9.180 0.286 11.027 hybrid contribution 1.038 -0.746 -0.499 1.372 sum -5.064 8.434 -0.213 9.839 Atomic orbital electron populations 1.21770 0.94535 1.01914 1.01650 1.22216 0.95975 0.96087 0.92958 1.21734 1.01023 0.95175 1.01743 1.68984 1.06624 1.09782 1.34036 1.23702 0.90878 0.95330 1.01334 1.23703 0.94979 0.95402 1.02077 1.18167 0.89079 0.78965 0.76684 1.92860 1.76708 1.54763 1.96151 1.92824 1.95140 1.93552 1.39126 1.21509 1.03377 1.18659 1.19224 0.90358 1.25144 0.98689 0.94547 0.94151 1.70037 1.37038 1.17158 1.24659 0.86390 0.82154 0.78038 0.79909 1.19606 1.20865 1.19648 1.23754 0.98524 0.89220 1.00923 0.92071 0.92605 0.92710 0.93389 0.92716 0.92640 0.92016 0.90335 0.89937 0.86937 0.92072 0.90044 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.23 37.16 0.34 -1.42 16 2 C 0.04 0.53 2.27 -67.71 -0.15 0.38 16 3 C -0.14 -1.74 9.25 37.16 0.34 -1.40 16 4 N -0.47 -7.95 6.13 -236.61 -1.45 -9.40 16 5 C 0.02 0.30 6.57 -7.55 -0.05 0.25 16 6 C -0.14 -2.99 3.68 -90.09 -0.33 -3.32 16 7 C 0.41 10.68 1.42 -27.88 -0.04 10.64 16 8 F -0.22 -6.30 16.38 2.25 0.04 -6.26 16 9 F -0.23 -6.22 15.10 2.25 0.03 -6.19 16 10 C -0.59 -16.38 8.59 -34.44 -0.30 -16.67 16 11 H 0.08 2.05 7.74 -52.49 -0.41 1.64 16 12 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 13 N -0.86 -25.43 12.62 55.43 0.70 -24.73 16 14 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.00 0.08 6.08 -7.55 -0.05 0.04 16 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.70 7.49 -51.93 -0.39 0.32 16 22 H 0.05 0.75 7.56 -51.93 -0.39 0.36 16 23 H 0.05 0.70 7.84 -51.93 -0.41 0.30 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.55 6.53 -51.93 -0.34 1.21 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.11 2.30 8.12 -51.93 -0.42 1.88 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.07 1.32 7.73 -51.93 -0.40 0.92 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -30.11 263.72 -6.48 -36.59 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.43 Total: -0.71 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.32 Total: -9.23 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: -0.75 Total: -34.13 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.11 -6.48 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260605839.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.221 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds