Wall clock time and date at job start Mon Mar 30 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47176 * 2 1 4 4 N 1.46899 * 109.46982 * 119.99593 * 2 1 3 5 5 C 1.47474 * 111.00375 * 164.93314 * 4 2 1 6 6 C 1.53510 * 87.93487 * 221.29539 * 5 4 2 7 7 C 1.52998 * 114.34573 * 139.67881 * 6 5 4 8 8 F 1.39901 * 109.47435 * 211.07663 * 7 6 5 9 9 F 1.39896 * 109.47208 * 331.07906 * 7 6 5 10 10 C 1.50706 * 109.46870 * 91.07704 * 7 6 5 11 11 H 1.07995 * 119.99976 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99647 * 180.02562 * 10 7 6 13 13 N 1.31511 * 120.00083 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99924 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46966 * 59.99928 * 14 12 10 16 16 H 1.48495 * 109.47126 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47010 * 300.00362 * 14 12 10 18 18 C 1.47482 * 111.00332 * 68.95950 * 4 2 1 19 19 H 1.08992 * 109.47377 * 300.00471 * 1 2 3 20 20 H 1.09004 * 109.46754 * 60.00612 * 1 2 3 21 21 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47642 * 239.99502 * 2 1 3 23 23 H 1.08992 * 109.47477 * 185.22088 * 3 2 1 24 24 H 1.09001 * 109.46779 * 305.21803 * 3 2 1 25 25 H 1.09007 * 109.47194 * 65.21407 * 3 2 1 26 26 H 1.09004 * 113.47615 * 336.06385 * 5 4 2 27 27 H 1.09005 * 113.48224 * 106.52715 * 5 4 2 28 28 H 1.08998 * 114.16876 * 272.37648 * 6 5 4 29 29 H 0.97007 * 119.99476 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.47466 * 253.47159 * 18 4 2 31 31 H 1.08998 * 113.47366 * 23.93526 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4492 -1.0300 1.0684 6 6 3.1300 -2.3885 1.7080 7 6 3.8647 -3.5719 1.0750 8 9 3.0710 -4.7198 1.1724 9 9 4.1211 -3.2950 -0.2721 10 6 5.1674 -3.7991 1.7979 11 1 5.4434 -3.1634 2.6261 12 6 6.0069 -4.8187 1.4017 13 7 5.6709 -5.5925 0.3927 14 14 7.6220 -5.1000 2.2971 15 1 7.3503 -5.3941 3.7272 16 1 8.3356 -6.2478 1.6821 17 1 8.4641 -3.8812 2.1937 18 6 1.7298 -2.1369 1.1314 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1259 1.4439 -0.0935 24 1 1.6023 1.9825 -0.8396 25 1 1.7549 1.9287 0.9330 26 1 3.7846 -1.1051 0.0340 27 1 4.1009 -0.4049 1.6791 28 1 3.1705 -2.3895 2.7972 29 1 6.2614 -6.3100 0.1143 30 1 0.9240 -2.4498 1.7954 31 1 1.6061 -2.5074 0.1138 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260605839.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:08 Heat of formation + Delta-G solvation = -98.946169 kcal Electronic energy + Delta-G solvation = -15700.644638 eV Core-core repulsion = 12845.634282 eV Total energy + Delta-G solvation = -2855.010356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.99343 -47.02435 -41.07963 -35.37001 -34.77495 -30.56426 -28.57601 -27.57688 -26.29590 -24.22426 -21.24235 -20.63303 -19.26563 -17.78171 -17.53551 -16.95978 -16.60352 -15.88035 -15.29836 -15.15604 -15.02482 -13.98853 -13.91892 -13.77283 -13.47528 -13.32756 -13.12162 -12.95230 -12.82720 -12.80686 -12.47692 -12.27871 -12.05777 -11.89773 -11.62227 -11.39204 -10.90414 -10.71328 -9.93002 -8.35955 -6.71410 1.39447 1.43824 1.52243 2.30396 2.88890 2.93917 3.39285 3.61931 3.86514 3.91969 4.04518 4.21975 4.41336 4.42617 4.60047 4.76911 4.78531 4.79549 4.89558 4.92605 5.00218 5.04461 5.07107 5.32783 5.42836 5.47439 5.51188 5.58848 6.08540 6.43424 7.14644 8.69731 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.052484 B = 0.008172 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.363519 B = 3425.346304 C = 3625.427910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 C -0.134 4.134 4 N -0.459 5.459 5 C 0.024 3.976 6 C -0.146 4.146 7 C 0.389 3.611 8 F -0.241 7.241 9 F -0.239 7.239 10 C -0.611 4.611 11 H 0.090 0.910 12 C 0.026 3.974 13 N -0.901 5.901 14 Si 0.983 3.017 15 H -0.260 1.260 16 H -0.280 1.280 17 H -0.260 1.260 18 C 0.013 3.987 19 H 0.067 0.933 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.272 0.728 30 H 0.096 0.904 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 10.349 0.786 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C -0.192 4.192 4 N -0.182 5.182 5 C -0.105 4.105 6 C -0.166 4.166 7 C 0.353 3.647 8 F -0.222 7.222 9 F -0.221 7.221 10 C -0.648 4.648 11 H 0.108 0.892 12 C -0.179 4.179 13 N -0.535 5.535 14 Si 0.805 3.195 15 H -0.184 1.184 16 H -0.205 1.205 17 H -0.184 1.184 18 C -0.116 4.116 19 H 0.086 0.914 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.076 10.627 1.147 12.295 hybrid contribution 0.983 -1.183 -0.801 1.734 sum -5.093 9.445 0.346 10.736 Atomic orbital electron populations 1.21750 0.92654 1.01895 1.03087 1.22383 0.97561 0.96893 0.91149 1.21712 1.00668 0.93763 1.03019 1.68997 1.05186 1.08648 1.35365 1.23604 0.92385 0.94145 1.00398 1.23629 0.96474 0.94307 1.02141 1.18665 0.89640 0.80202 0.76217 1.92810 1.77032 1.56217 1.96188 1.92781 1.95336 1.93647 1.40311 1.22009 1.04206 1.18958 1.19640 0.89222 1.26201 1.02775 0.94085 0.94847 1.70170 1.38750 1.18020 1.26549 0.85239 0.77149 0.78289 0.78796 1.18435 1.20486 1.18410 1.23659 0.97410 0.90315 1.00250 0.91399 0.90418 0.93484 0.94886 0.93415 0.90388 0.91505 0.91838 0.88572 0.86276 0.91915 0.88527 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.23 71.98 0.66 -2.42 16 2 C 0.03 0.79 2.27 44.91 0.10 0.90 16 3 C -0.13 -3.02 9.25 71.98 0.67 -2.36 16 4 N -0.46 -14.78 6.13 -902.48 -5.53 -20.31 16 5 C 0.02 0.86 6.57 83.57 0.55 1.41 16 6 C -0.15 -6.10 3.68 -10.45 -0.04 -6.13 16 7 C 0.39 20.69 1.42 29.85 0.04 20.73 16 8 F -0.24 -13.91 16.38 44.97 0.74 -13.17 16 9 F -0.24 -13.58 15.10 44.97 0.68 -12.90 16 10 C -0.61 -33.98 8.59 25.60 0.22 -33.76 16 11 H 0.09 4.63 7.74 -2.91 -0.02 4.61 16 12 C 0.03 1.43 5.39 84.66 0.46 1.89 16 13 N -0.90 -54.39 12.62 21.45 0.27 -54.12 16 14 Si 0.98 42.74 29.54 68.60 2.03 44.77 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 C 0.01 0.45 6.08 83.57 0.51 0.96 16 19 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 21 H 0.05 1.13 7.49 -2.38 -0.02 1.11 16 22 H 0.03 1.02 7.56 -2.39 -0.02 1.00 16 23 H 0.05 1.13 7.84 -2.39 -0.02 1.12 16 24 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.06 2.52 6.53 -2.38 -0.02 2.50 16 27 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 28 H 0.12 4.77 8.12 -2.39 -0.02 4.75 16 29 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 30 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.06 2.15 7.73 -2.39 -0.02 2.13 16 Total: -1.00 -64.42 263.72 2.46 -61.96 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.10 Total: 12.56 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 3.17 Total: -18.78 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -5.26 Total: -74.43 kcal Atomic # 9 Polarization: -27.49 SS G_CDS: 1.42 Total: -26.07 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -64.42 2.46 -61.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260605839.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.986 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds