Wall clock time and date at job start Mon Mar 30 2020 02:52:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86800 * 119.99927 * 2 1
4 4 H 1.48504 * 109.46785 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47027 * 299.99791 * 3 2 1
6 6 H 1.48500 * 109.47083 * 60.00057 * 3 2 1
7 7 C 1.37873 * 119.99634 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99983 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00490 * 0.02562 * 7 2 1
10 10 F 1.39902 * 109.47112 * 59.99810 * 9 7 2
11 11 F 1.39901 * 109.47037 * 300.00226 * 9 7 2
12 12 C 1.52998 * 109.47383 * 179.97438 * 9 7 2
13 13 N 1.46898 * 109.47110 * 186.07454 * 12 9 7
14 14 C 1.46842 * 111.00601 * 312.69101 * 13 12 9
15 15 C 1.53036 * 109.52542 * 185.83851 * 14 13 12
16 16 C 1.53120 * 109.27576 * 300.81591 * 15 14 13
17 17 C 1.53114 * 109.15995 * 57.65819 * 16 15 14
18 18 C 1.46852 * 110.99508 * 76.90088 * 13 12 9
19 19 H 0.96999 * 119.99679 * 0.02562 * 1 2 3
20 20 H 1.09008 * 109.46986 * 66.08077 * 12 9 7
21 21 H 1.08997 * 109.47232 * 306.08230 * 12 9 7
22 22 H 1.08999 * 109.46579 * 65.81677 * 14 13 12
23 23 H 1.09007 * 109.46140 * 305.85340 * 14 13 12
24 24 H 1.09008 * 109.49910 * 180.87698 * 15 14 13
25 25 H 1.08995 * 109.50297 * 60.76135 * 15 14 13
26 26 H 1.09002 * 109.51823 * 177.56300 * 16 15 14
27 27 H 1.09000 * 109.52526 * 297.75077 * 16 15 14
28 28 H 1.09004 * 109.50388 * 62.28063 * 17 16 15
29 29 H 1.08994 * 109.50511 * 182.40229 * 17 16 15
30 30 H 1.08994 * 109.46402 * 54.14421 * 18 13 12
31 31 H 1.08996 * 109.46100 * 294.17373 * 18 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 9 0.4471 -2.5736 -1.1420
11 9 0.4462 -2.5730 1.1425
12 6 2.2452 -3.6621 0.0005
13 7 1.5166 -4.9292 -0.1460
14 6 0.3708 -4.9867 0.7706
15 6 -0.2755 -6.3718 0.6953
16 6 -0.7335 -6.6385 -0.7412
17 6 0.4695 -6.5251 -1.6815
18 6 1.0944 -5.1355 -1.5373
19 1 -0.4849 0.8401 -0.0004
20 1 2.7980 -3.6675 0.9400
21 1 2.9413 -3.5450 -0.8300
22 1 -0.3597 -4.2291 0.4868
23 1 0.7109 -4.7994 1.7892
24 1 -1.1353 -6.4089 1.3643
25 1 0.4504 -7.1287 0.9924
26 1 -1.1554 -7.6413 -0.8087
27 1 -1.4881 -5.9049 -1.0251
28 1 1.2072 -7.2844 -1.4218
29 1 0.1421 -6.6718 -2.7107
30 1 1.9599 -5.0565 -2.1951
31 1 0.3605 -4.3773 -1.8103
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260696614.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:30
Heat of formation + Delta-G solvation = -109.746296 kcal
Electronic energy + Delta-G solvation = -16165.554820 eV
Core-core repulsion = 13310.076136 eV
Total energy + Delta-G solvation = -2855.478684 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 219.113 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-47.08520 -44.96366 -38.18291 -33.44481 -32.68613 -30.33824 -28.60761 -25.28627
-22.76804 -22.56637 -20.63560 -19.24151 -17.30852 -15.78143 -15.51707 -15.11757
-14.45727 -14.21477 -14.13948 -13.75826 -13.21372 -12.78558 -12.35439 -12.20575
-11.75654 -11.59561 -11.32220 -11.08674 -11.04522 -10.92910 -10.54003 -10.45443
-10.34463 -10.10888 -9.94136 -9.88139 -9.30002 -8.85410 -7.38008 -6.26578
-4.55559 3.18157 3.24981 3.29575 4.20450 4.49912 5.03586 5.19903
5.24808 5.28091 5.51975 5.64720 5.86642 5.93259 6.00409 6.03984
6.16870 6.25966 6.31238 6.38953 6.43532 6.53322 6.63312 6.76224
6.88790 7.34680 7.35306 7.61194 7.73537 7.78430 8.52219 9.25617
10.76093
Molecular weight = 219.11amu
Principal moments of inertia in cm(-1)
A = 0.058877 B = 0.008956 C = 0.008770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 475.452305 B = 3125.579425 C = 3192.014561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.855 5.855
2 C 0.084 3.916
3 Si 0.909 3.091
4 H -0.267 1.267
5 H -0.279 1.279
6 H -0.279 1.279
7 C -0.596 4.596
8 H 0.079 0.921
9 C 0.368 3.632
10 F -0.222 7.222
11 F -0.221 7.221
12 C 0.026 3.974
13 N -0.538 5.538
14 C 0.043 3.957
15 C -0.116 4.116
16 C -0.121 4.121
17 C -0.113 4.113
18 C 0.035 3.965
19 H 0.268 0.732
20 H 0.088 0.912
21 H 0.086 0.914
22 H 0.058 0.942
23 H 0.073 0.927
24 H 0.060 0.940
25 H 0.062 0.938
26 H 0.055 0.945
27 H 0.059 0.941
28 H 0.062 0.938
29 H 0.059 0.941
30 H 0.066 0.934
31 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.928 -9.006 -1.029 9.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.487 5.487
2 C -0.125 4.125
3 Si 0.735 3.265
4 H -0.192 1.192
5 H -0.205 1.205
6 H -0.204 1.204
7 C -0.633 4.633
8 H 0.097 0.903
9 C 0.331 3.669
10 F -0.203 7.203
11 F -0.203 7.203
12 C -0.103 4.103
13 N -0.261 5.261
14 C -0.084 4.084
15 C -0.154 4.154
16 C -0.158 4.158
17 C -0.151 4.151
18 C -0.093 4.093
19 H 0.078 0.922
20 H 0.106 0.894
21 H 0.105 0.895
22 H 0.076 0.924
23 H 0.091 0.909
24 H 0.079 0.921
25 H 0.081 0.919
26 H 0.074 0.926
27 H 0.078 0.922
28 H 0.081 0.919
29 H 0.078 0.922
30 H 0.085 0.915
31 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 1.021 -9.299 -0.905 9.399
hybrid contribution -0.273 1.602 -0.195 1.637
sum 0.747 -7.697 -1.100 7.811
Atomic orbital electron populations
1.70053 1.06297 1.27630 1.44752 1.25139 0.94936 1.00203 0.92216
0.86278 0.80132 0.82159 0.77932 1.19170 1.20477 1.20447 1.21608
0.94103 0.89502 1.58112 0.90268 1.19188 0.81197 0.96009 0.70509
1.92765 1.77565 1.97010 1.52987 1.92829 1.77178 1.97237 1.53021
1.23181 0.96802 0.86426 1.03864 1.62169 1.25062 1.33189 1.05704
1.22438 0.92676 0.96342 0.96977 1.21616 0.99620 0.97825 0.96308
1.21563 0.97830 1.00715 0.95709 1.21560 0.97334 0.97617 0.98568
1.22415 1.00185 0.96945 0.89751 0.92188 0.89376 0.89506 0.92419
0.90886 0.92130 0.91906 0.92587 0.92230 0.91884 0.92199 0.91547
0.91841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -25.35 12.62 55.43 0.70 -24.65 16
2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16
3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16
4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16
5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
7 C -0.60 -16.52 8.60 -34.44 -0.30 -16.81 16
8 H 0.08 2.07 7.74 -52.48 -0.41 1.67 16
9 C 0.37 9.60 1.13 -27.88 -0.03 9.57 16
10 F -0.22 -6.11 13.16 2.25 0.03 -6.08 16
11 F -0.22 -6.09 13.20 2.25 0.03 -6.06 16
12 C 0.03 0.56 5.23 -3.83 -0.02 0.54 16
13 N -0.54 -10.41 4.86 -234.67 -1.14 -11.55 16
14 C 0.04 0.84 3.95 -3.84 -0.02 0.82 16
15 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16
16 C -0.12 -1.75 6.00 -26.61 -0.16 -1.91 16
17 C -0.11 -1.66 6.09 -26.65 -0.16 -1.83 16
18 C 0.03 0.63 5.03 -3.83 -0.02 0.61 16
19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
20 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16
21 H 0.09 1.76 7.85 -51.93 -0.41 1.35 16
22 H 0.06 1.30 5.70 -51.93 -0.30 1.01 16
23 H 0.07 1.42 7.77 -51.93 -0.40 1.02 16
24 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16
25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16
31 H 0.06 1.32 5.57 -51.93 -0.29 1.03 16
LS Contribution 250.11 15.07 3.77 3.77
Total: -1.00 -30.10 250.11 -6.91 -37.01
By element:
Atomic # 1 Polarization: 4.58 SS G_CDS: -4.31 Total: 0.27 kcal
Atomic # 6 Polarization: -7.72 SS G_CDS: -0.96 Total: -8.69 kcal
Atomic # 7 Polarization: -35.76 SS G_CDS: -0.44 Total: -36.20 kcal
Atomic # 9 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal
Total LS contribution 3.77 Total: 3.77 kcal
Total: -30.10 -6.91 -37.01 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260696614.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.741 kcal
(2) G-P(sol) polarization free energy of solvation -30.100 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds