Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48504 * 109.46785 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47027 * 299.99791 * 3 2 1 6 6 H 1.48500 * 109.47083 * 60.00057 * 3 2 1 7 7 C 1.37873 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00490 * 0.02562 * 7 2 1 10 10 F 1.39902 * 109.47112 * 59.99810 * 9 7 2 11 11 F 1.39901 * 109.47037 * 300.00226 * 9 7 2 12 12 C 1.52998 * 109.47383 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.47110 * 186.07454 * 12 9 7 14 14 C 1.46842 * 111.00601 * 312.69101 * 13 12 9 15 15 C 1.53036 * 109.52542 * 185.83851 * 14 13 12 16 16 C 1.53120 * 109.27576 * 300.81591 * 15 14 13 17 17 C 1.53114 * 109.15995 * 57.65819 * 16 15 14 18 18 C 1.46852 * 110.99508 * 76.90088 * 13 12 9 19 19 H 0.96999 * 119.99679 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.46986 * 66.08077 * 12 9 7 21 21 H 1.08997 * 109.47232 * 306.08230 * 12 9 7 22 22 H 1.08999 * 109.46579 * 65.81677 * 14 13 12 23 23 H 1.09007 * 109.46140 * 305.85340 * 14 13 12 24 24 H 1.09008 * 109.49910 * 180.87698 * 15 14 13 25 25 H 1.08995 * 109.50297 * 60.76135 * 15 14 13 26 26 H 1.09002 * 109.51823 * 177.56300 * 16 15 14 27 27 H 1.09000 * 109.52526 * 297.75077 * 16 15 14 28 28 H 1.09004 * 109.50388 * 62.28063 * 17 16 15 29 29 H 1.08994 * 109.50511 * 182.40229 * 17 16 15 30 30 H 1.08994 * 109.46402 * 54.14421 * 18 13 12 31 31 H 1.08996 * 109.46100 * 294.17373 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 9 0.4471 -2.5736 -1.1420 11 9 0.4462 -2.5730 1.1425 12 6 2.2452 -3.6621 0.0005 13 7 1.5166 -4.9292 -0.1460 14 6 0.3708 -4.9867 0.7706 15 6 -0.2755 -6.3718 0.6953 16 6 -0.7335 -6.6385 -0.7412 17 6 0.4695 -6.5251 -1.6815 18 6 1.0944 -5.1355 -1.5373 19 1 -0.4849 0.8401 -0.0004 20 1 2.7980 -3.6675 0.9400 21 1 2.9413 -3.5450 -0.8300 22 1 -0.3597 -4.2291 0.4868 23 1 0.7109 -4.7994 1.7892 24 1 -1.1353 -6.4089 1.3643 25 1 0.4504 -7.1287 0.9924 26 1 -1.1554 -7.6413 -0.8087 27 1 -1.4881 -5.9049 -1.0251 28 1 1.2072 -7.2844 -1.4218 29 1 0.1421 -6.6718 -2.7107 30 1 1.9599 -5.0565 -2.1951 31 1 0.3605 -4.3773 -1.8103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = -109.746296 kcal Electronic energy + Delta-G solvation = -16165.554820 eV Core-core repulsion = 13310.076136 eV Total energy + Delta-G solvation = -2855.478684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.08520 -44.96366 -38.18291 -33.44481 -32.68613 -30.33824 -28.60761 -25.28627 -22.76804 -22.56637 -20.63560 -19.24151 -17.30852 -15.78143 -15.51707 -15.11757 -14.45727 -14.21477 -14.13948 -13.75826 -13.21372 -12.78558 -12.35439 -12.20575 -11.75654 -11.59561 -11.32220 -11.08674 -11.04522 -10.92910 -10.54003 -10.45443 -10.34463 -10.10888 -9.94136 -9.88139 -9.30002 -8.85410 -7.38008 -6.26578 -4.55559 3.18157 3.24981 3.29575 4.20450 4.49912 5.03586 5.19903 5.24808 5.28091 5.51975 5.64720 5.86642 5.93259 6.00409 6.03984 6.16870 6.25966 6.31238 6.38953 6.43532 6.53322 6.63312 6.76224 6.88790 7.34680 7.35306 7.61194 7.73537 7.78430 8.52219 9.25617 10.76093 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.058877 B = 0.008956 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.452305 B = 3125.579425 C = 3192.014561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.084 3.916 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.596 4.596 8 H 0.079 0.921 9 C 0.368 3.632 10 F -0.222 7.222 11 F -0.221 7.221 12 C 0.026 3.974 13 N -0.538 5.538 14 C 0.043 3.957 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.113 4.113 18 C 0.035 3.965 19 H 0.268 0.732 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 -9.006 -1.029 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.125 4.125 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.633 4.633 8 H 0.097 0.903 9 C 0.331 3.669 10 F -0.203 7.203 11 F -0.203 7.203 12 C -0.103 4.103 13 N -0.261 5.261 14 C -0.084 4.084 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.093 4.093 19 H 0.078 0.922 20 H 0.106 0.894 21 H 0.105 0.895 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.021 -9.299 -0.905 9.399 hybrid contribution -0.273 1.602 -0.195 1.637 sum 0.747 -7.697 -1.100 7.811 Atomic orbital electron populations 1.70053 1.06297 1.27630 1.44752 1.25139 0.94936 1.00203 0.92216 0.86278 0.80132 0.82159 0.77932 1.19170 1.20477 1.20447 1.21608 0.94103 0.89502 1.58112 0.90268 1.19188 0.81197 0.96009 0.70509 1.92765 1.77565 1.97010 1.52987 1.92829 1.77178 1.97237 1.53021 1.23181 0.96802 0.86426 1.03864 1.62169 1.25062 1.33189 1.05704 1.22438 0.92676 0.96342 0.96977 1.21616 0.99620 0.97825 0.96308 1.21563 0.97830 1.00715 0.95709 1.21560 0.97334 0.97617 0.98568 1.22415 1.00185 0.96945 0.89751 0.92188 0.89376 0.89506 0.92419 0.90886 0.92130 0.91906 0.92587 0.92230 0.91884 0.92199 0.91547 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.35 12.62 55.43 0.70 -24.65 16 2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.60 -16.52 8.60 -34.44 -0.30 -16.81 16 8 H 0.08 2.07 7.74 -52.48 -0.41 1.67 16 9 C 0.37 9.60 1.13 -27.88 -0.03 9.57 16 10 F -0.22 -6.11 13.16 2.25 0.03 -6.08 16 11 F -0.22 -6.09 13.20 2.25 0.03 -6.06 16 12 C 0.03 0.56 5.23 -3.83 -0.02 0.54 16 13 N -0.54 -10.41 4.86 -234.67 -1.14 -11.55 16 14 C 0.04 0.84 3.95 -3.84 -0.02 0.82 16 15 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 16 C -0.12 -1.75 6.00 -26.61 -0.16 -1.91 16 17 C -0.11 -1.66 6.09 -26.65 -0.16 -1.83 16 18 C 0.03 0.63 5.03 -3.83 -0.02 0.61 16 19 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 21 H 0.09 1.76 7.85 -51.93 -0.41 1.35 16 22 H 0.06 1.30 5.70 -51.93 -0.30 1.01 16 23 H 0.07 1.42 7.77 -51.93 -0.40 1.02 16 24 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 31 H 0.06 1.32 5.57 -51.93 -0.29 1.03 16 LS Contribution 250.11 15.07 3.77 3.77 Total: -1.00 -30.10 250.11 -6.91 -37.01 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.31 Total: 0.27 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.96 Total: -8.69 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.44 Total: -36.20 kcal Atomic # 9 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.10 -6.91 -37.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.741 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds