Wall clock time and date at job start Mon Mar 30 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31409 * 118.97597 * 2 1 4 4 C 1.34008 * 120.47205 * 180.02562 * 3 2 1 5 5 C 1.41546 * 120.66638 * 180.10408 * 4 3 2 6 6 H 1.08006 * 119.99875 * 173.94309 * 5 4 3 7 7 C 1.40114 * 120.00364 * 353.93950 * 5 4 3 8 8 N 1.30667 * 119.99646 * 6.29482 * 7 5 4 9 9 Si 1.86797 * 120.00144 * 186.29481 * 7 5 4 10 10 H 1.48499 * 109.47266 * 94.98293 * 9 7 5 11 11 H 1.48501 * 109.47258 * 214.98494 * 9 7 5 12 12 H 1.48497 * 109.47258 * 334.98634 * 9 7 5 13 13 C 1.41377 * 118.59881 * 359.92791 * 4 3 2 14 14 C 1.37382 * 118.34086 * 0.07283 * 13 4 3 15 15 N 1.31939 * 118.97517 * 179.97438 * 2 1 3 16 16 C 1.50551 * 121.55538 * 180.11537 * 14 13 4 17 17 C 1.52963 * 109.84811 * 342.99534 * 16 14 13 18 18 N 1.47151 * 108.63346 * 50.34730 * 17 16 14 19 19 C 1.46740 * 110.32181 * 288.91728 * 18 17 16 20 20 H 1.08994 * 109.47269 * 270.02004 * 1 2 3 21 21 H 1.08999 * 109.47117 * 30.02224 * 1 2 3 22 22 H 1.09000 * 109.47366 * 150.01888 * 1 2 3 23 23 H 0.97010 * 119.99740 * 180.02562 * 8 7 5 24 24 H 1.08998 * 109.41251 * 222.88177 * 16 14 13 25 25 H 1.08998 * 109.41441 * 103.10967 * 16 14 13 26 26 H 1.09002 * 109.61238 * 290.60504 * 17 16 14 27 27 H 1.09003 * 109.61274 * 170.08982 * 17 16 14 28 28 H 1.00896 * 111.00241 * 52.38676 * 18 17 16 29 29 H 1.08999 * 109.32596 * 172.39908 * 19 18 17 30 30 H 1.09003 * 109.31942 * 292.03502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1436 1.1496 0.0000 4 6 3.4832 1.1846 -0.0005 5 6 4.1731 2.4205 0.0017 6 1 5.2485 2.4385 0.1000 7 6 3.4610 3.6207 -0.1237 8 7 2.1544 3.6086 -0.1188 9 14 4.3794 5.2379 -0.2977 10 1 4.5132 5.5789 -1.7368 11 1 3.6261 6.3123 0.3977 12 1 5.7292 5.1083 0.3077 13 6 4.1921 -0.0386 0.0005 14 6 3.4730 -1.2092 0.0004 15 7 2.1461 -1.1542 0.0005 16 6 4.1537 -2.5520 0.0041 17 6 5.6167 -2.3938 -0.4133 18 7 6.2234 -1.3247 0.3956 19 6 5.6948 -0.0170 -0.0092 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6613 4.4394 -0.2060 24 1 3.6473 -3.2167 -0.6958 25 1 4.1070 -2.9791 1.0058 26 1 5.6693 -2.1282 -1.4692 27 1 6.1493 -3.3293 -0.2419 28 1 6.0731 -1.4865 1.3800 29 1 6.0490 0.7456 0.6844 30 1 6.0456 0.2184 -1.0140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260730484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:05 Heat of formation + Delta-G solvation = 29.938588 kcal Electronic energy + Delta-G solvation = -14765.878559 eV Core-core repulsion = 12367.146253 eV Total energy + Delta-G solvation = -2398.732307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.54717 -36.59624 -34.29058 -31.94365 -31.35340 -29.55966 -27.55253 -26.47101 -23.19924 -22.71477 -21.00882 -19.41915 -17.48299 -16.42793 -15.10435 -14.87873 -14.39456 -13.92694 -13.72000 -13.22869 -12.84261 -12.47740 -12.37864 -11.96234 -11.48922 -11.38965 -11.31532 -11.04432 -10.95034 -10.71025 -10.56500 -10.19268 -9.67713 -9.37601 -8.51179 -7.91766 -7.67298 -7.41742 -6.52749 -4.82911 2.57351 2.79145 3.00868 3.04304 3.17282 3.82468 4.63608 4.83687 5.18568 5.54023 5.59032 5.65813 5.74040 6.00262 6.12155 6.17417 6.31958 6.34809 6.44315 6.51052 6.55851 6.60674 6.75049 6.96462 7.15340 7.24054 7.54868 7.79567 7.89339 7.98329 8.44602 8.71628 9.03518 10.06503 10.19665 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.011852 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.083966 B = 2361.816937 C = 3339.129492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.305 3.695 3 N -0.517 5.517 4 C 0.277 3.723 5 C -0.418 4.418 6 H 0.092 0.908 7 C 0.069 3.931 8 N -0.704 5.704 9 Si 0.910 3.090 10 H -0.268 1.268 11 H -0.274 1.274 12 H -0.258 1.258 13 C -0.326 4.326 14 C 0.165 3.835 15 N -0.624 5.624 16 C -0.098 4.098 17 C 0.060 3.940 18 N -0.685 5.685 19 C 0.130 3.870 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.276 0.724 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.335 0.665 29 H 0.074 0.926 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -3.279 0.082 4.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.034 3.966 3 N -0.238 5.238 4 C 0.147 3.853 5 C -0.451 4.451 6 H 0.110 0.890 7 C -0.159 4.159 8 N -0.326 5.326 9 Si 0.734 3.266 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.182 1.182 13 C -0.336 4.336 14 C 0.026 3.974 15 N -0.348 5.348 16 C -0.137 4.137 17 C -0.070 4.070 18 N -0.312 5.312 19 C 0.000 4.000 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.093 0.907 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.363 -3.089 -0.321 3.902 hybrid contribution 0.166 0.735 0.275 0.802 sum 2.529 -2.354 -0.046 3.456 Atomic orbital electron populations 1.20235 0.88997 1.01759 1.01605 1.22786 0.96776 0.85100 0.91944 1.69214 1.08818 1.25689 1.20046 1.18760 0.87981 0.91521 0.86991 1.19711 0.94945 0.89044 1.41422 0.89046 1.26152 0.94913 1.01311 0.93475 1.70097 1.07087 1.28559 1.26809 0.86256 0.80593 0.80358 0.79405 1.19273 1.19946 1.18212 1.21346 0.97570 0.95248 1.19440 1.20223 0.90043 0.93223 0.93888 1.67857 1.08792 1.30648 1.27539 1.20917 0.96419 0.94519 1.01860 1.22010 0.91477 0.95012 0.98547 1.61143 1.58958 1.02818 1.08244 1.20359 0.89311 0.89734 1.00602 0.91909 0.90951 0.91998 0.91262 0.90735 0.91271 0.91145 0.90907 0.84896 0.90732 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.31 36.00 0.37 -1.02 16 2 C 0.30 7.83 7.64 -157.40 -1.20 6.63 16 3 N -0.52 -14.43 7.98 -8.59 -0.07 -14.50 16 4 C 0.28 7.53 6.59 -84.46 -0.56 6.98 16 5 C -0.42 -10.77 8.71 -37.62 -0.33 -11.09 16 6 H 0.09 2.17 6.29 -52.48 -0.33 1.84 16 7 C 0.07 1.70 5.49 -17.34 -0.10 1.60 16 8 N -0.70 -18.25 11.55 55.55 0.64 -17.61 16 9 Si 0.91 17.92 29.56 -169.99 -5.03 12.89 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 13 C -0.33 -7.89 5.85 -103.94 -0.61 -8.50 16 14 C 0.16 3.87 6.67 -82.56 -0.55 3.32 16 15 N -0.62 -15.68 10.23 -7.28 -0.07 -15.75 16 16 C -0.10 -1.78 6.10 -27.97 -0.17 -1.95 16 17 C 0.06 0.96 6.61 -3.71 -0.02 0.94 16 18 N -0.68 -11.85 6.96 -115.23 -0.80 -12.66 16 19 C 0.13 2.65 5.59 -5.26 -0.03 2.62 16 20 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 21 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.17 8.05 -51.93 -0.42 0.76 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.33 5.52 8.75 -39.29 -0.34 5.18 16 29 H 0.07 1.51 6.94 -51.93 -0.36 1.15 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 252.46 15.07 3.80 3.80 Total: -1.00 -29.64 252.46 -8.26 -37.90 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.55 Total: 6.40 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.19 Total: -0.47 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.30 Total: -60.53 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.64 -8.26 -37.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.840 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds