Wall clock time and date at job start Mon Mar 30 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31409 * 118.97597 * 2 1 4 4 C 1.34008 * 120.47205 * 180.02562 * 3 2 1 5 5 C 1.41546 * 120.66638 * 180.10408 * 4 3 2 6 6 H 1.08006 * 119.99875 * 173.94309 * 5 4 3 7 7 C 1.40114 * 120.00364 * 353.93950 * 5 4 3 8 8 N 1.30667 * 119.99646 * 6.29482 * 7 5 4 9 9 Si 1.86797 * 120.00144 * 186.29481 * 7 5 4 10 10 H 1.48499 * 109.47266 * 94.98293 * 9 7 5 11 11 H 1.48501 * 109.47258 * 214.98494 * 9 7 5 12 12 H 1.48497 * 109.47258 * 334.98634 * 9 7 5 13 13 C 1.41377 * 118.59881 * 359.92791 * 4 3 2 14 14 C 1.37382 * 118.34086 * 0.07283 * 13 4 3 15 15 N 1.31939 * 118.97517 * 179.97438 * 2 1 3 16 16 C 1.50551 * 121.55538 * 180.11537 * 14 13 4 17 17 C 1.52963 * 109.84811 * 342.99534 * 16 14 13 18 18 N 1.47151 * 108.63346 * 50.34730 * 17 16 14 19 19 C 1.46740 * 110.32181 * 288.91728 * 18 17 16 20 20 H 1.08994 * 109.47269 * 270.02004 * 1 2 3 21 21 H 1.08999 * 109.47117 * 30.02224 * 1 2 3 22 22 H 1.09000 * 109.47366 * 150.01888 * 1 2 3 23 23 H 0.97010 * 119.99740 * 180.02562 * 8 7 5 24 24 H 1.08998 * 109.41251 * 222.88177 * 16 14 13 25 25 H 1.08998 * 109.41441 * 103.10967 * 16 14 13 26 26 H 1.09002 * 109.61238 * 290.60504 * 17 16 14 27 27 H 1.09003 * 109.61274 * 170.08982 * 17 16 14 28 28 H 1.00896 * 111.00241 * 52.38676 * 18 17 16 29 29 H 1.08999 * 109.32596 * 172.39908 * 19 18 17 30 30 H 1.09003 * 109.31942 * 292.03502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1436 1.1496 0.0000 4 6 3.4832 1.1846 -0.0005 5 6 4.1731 2.4205 0.0017 6 1 5.2485 2.4385 0.1000 7 6 3.4610 3.6207 -0.1237 8 7 2.1544 3.6086 -0.1188 9 14 4.3794 5.2379 -0.2977 10 1 4.5132 5.5789 -1.7368 11 1 3.6261 6.3123 0.3977 12 1 5.7292 5.1083 0.3077 13 6 4.1921 -0.0386 0.0005 14 6 3.4730 -1.2092 0.0004 15 7 2.1461 -1.1542 0.0005 16 6 4.1537 -2.5520 0.0041 17 6 5.6167 -2.3938 -0.4133 18 7 6.2234 -1.3247 0.3956 19 6 5.6948 -0.0170 -0.0092 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6613 4.4394 -0.2060 24 1 3.6473 -3.2167 -0.6958 25 1 4.1070 -2.9791 1.0058 26 1 5.6693 -2.1282 -1.4692 27 1 6.1493 -3.3293 -0.2419 28 1 6.0731 -1.4865 1.3800 29 1 6.0490 0.7456 0.6844 30 1 6.0456 0.2184 -1.0140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260730484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:05 Heat of formation + Delta-G solvation = 9.178375 kcal Electronic energy + Delta-G solvation = -14766.778790 eV Core-core repulsion = 12367.146253 eV Total energy + Delta-G solvation = -2399.632537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.34140 -38.18509 -36.15029 -33.75761 -33.07281 -31.19707 -29.25768 -28.33628 -24.84543 -24.31030 -22.80786 -21.08842 -19.38089 -18.12909 -16.86646 -16.53403 -15.95423 -15.59334 -15.43122 -14.83067 -14.49365 -14.09242 -14.01726 -13.58225 -13.13474 -13.02350 -12.96881 -12.67596 -12.58947 -12.42776 -12.02566 -11.80872 -11.44597 -11.18977 -10.42354 -9.57481 -9.46251 -9.25123 -8.38586 -6.77571 0.70710 0.98269 1.39219 1.53615 1.54683 2.17300 2.77899 3.37519 3.64368 3.71552 3.93684 4.13285 4.24779 4.45137 4.52260 4.65454 4.72592 4.82172 4.88748 4.90109 4.97308 5.00006 5.07043 5.15919 5.36525 5.55611 5.95094 6.04671 6.07740 6.48093 6.56654 6.79125 7.13755 8.19499 8.33438 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.011852 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.083966 B = 2361.816937 C = 3339.129492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.279 3.721 3 N -0.552 5.552 4 C 0.238 3.762 5 C -0.441 4.441 6 H 0.103 0.897 7 C 0.023 3.977 8 N -0.744 5.744 9 Si 0.991 3.009 10 H -0.264 1.264 11 H -0.267 1.267 12 H -0.248 1.248 13 C -0.341 4.341 14 C 0.147 3.853 15 N -0.635 5.635 16 C -0.091 4.091 17 C 0.065 3.935 18 N -0.674 5.674 19 C 0.141 3.859 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.283 0.717 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.342 0.658 29 H 0.071 0.929 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -3.701 0.135 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.008 3.992 3 N -0.274 5.274 4 C 0.108 3.892 5 C -0.474 4.474 6 H 0.121 0.879 7 C -0.201 4.201 8 N -0.365 5.365 9 Si 0.810 3.190 10 H -0.188 1.188 11 H -0.192 1.192 12 H -0.172 1.172 13 C -0.351 4.351 14 C 0.009 3.991 15 N -0.360 5.360 16 C -0.130 4.130 17 C -0.065 4.065 18 N -0.301 5.301 19 C 0.010 3.990 20 H 0.094 0.906 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.717 -3.549 -0.261 5.145 hybrid contribution -0.288 0.791 0.266 0.883 sum 3.429 -2.758 0.005 4.400 Atomic orbital electron populations 1.20260 0.86291 1.02522 1.02675 1.23623 0.98790 0.85086 0.91688 1.69215 1.09647 1.26919 1.21589 1.19367 0.88539 0.93368 0.87906 1.20126 0.95706 0.89630 1.41939 0.87888 1.27151 0.95654 1.04869 0.92400 1.70190 1.08889 1.30041 1.27402 0.85057 0.79368 0.75116 0.79439 1.18835 1.19182 1.17154 1.21759 0.99605 0.94673 1.19040 1.21101 0.89884 0.95497 0.92630 1.67990 1.09806 1.30257 1.27936 1.21015 0.97323 0.91641 1.03063 1.22119 0.90312 0.96153 0.97886 1.61149 1.58212 1.01798 1.08928 1.20205 0.86912 0.91480 1.00398 0.90573 0.91264 0.90019 0.90571 0.89818 0.89777 0.91793 0.86828 0.84102 0.91060 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.45 10.31 71.24 0.73 -1.72 16 2 C 0.28 14.58 7.64 138.82 1.06 15.64 16 3 N -0.55 -31.72 7.98 -181.10 -1.44 -33.16 16 4 C 0.24 13.24 6.59 40.40 0.27 13.50 16 5 C -0.44 -23.09 8.71 23.54 0.20 -22.88 16 6 H 0.10 4.93 6.29 -2.91 -0.02 4.91 16 7 C 0.02 1.15 5.49 85.32 0.47 1.62 16 8 N -0.74 -39.35 11.55 21.85 0.25 -39.10 16 9 Si 0.99 36.53 29.56 68.60 2.03 38.56 16 10 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 11 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 12 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 13 C -0.34 -16.61 5.85 -19.42 -0.11 -16.72 16 14 C 0.15 6.84 6.67 42.16 0.28 7.12 16 15 N -0.64 -31.97 10.23 -176.94 -1.81 -33.78 16 16 C -0.09 -3.11 6.10 29.79 0.18 -2.93 16 17 C 0.07 1.90 6.61 86.24 0.57 2.47 16 18 N -0.67 -21.73 6.96 -518.48 -3.61 -25.34 16 19 C 0.14 5.63 5.59 85.46 0.48 6.10 16 20 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 21 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 22 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 23 H 0.28 13.45 8.29 -92.70 -0.77 12.68 16 24 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 27 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.34 10.41 8.75 -89.70 -0.78 9.63 16 29 H 0.07 2.86 6.94 -2.39 -0.02 2.84 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -65.02 252.46 -0.07 -65.09 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.38 Total: 25.54 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.13 Total: 2.20 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -6.61 Total: -131.38 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -65.02 -0.07 -65.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.268 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds