Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47918 * 110.99849 * 2 1 4 4 C 1.54596 * 102.60407 * 149.10851 * 3 2 1 5 5 H 1.08994 * 110.73100 * 216.14526 * 4 3 2 6 6 C 1.50706 * 110.88344 * 92.92120 * 4 3 2 7 7 H 1.07997 * 120.00021 * 271.61162 * 6 4 3 8 8 C 1.37872 * 119.99935 * 91.60501 * 6 4 3 9 9 N 1.31515 * 120.00427 * 178.12035 * 8 6 4 10 10 Si 1.86799 * 120.00136 * 358.11993 * 8 6 4 11 11 H 1.48505 * 109.47083 * 84.91221 * 10 8 6 12 12 H 1.48498 * 109.47727 * 204.91125 * 10 8 6 13 13 H 1.48499 * 109.47302 * 324.91510 * 10 8 6 14 14 C 1.51579 * 102.89192 * 334.50171 * 4 3 2 15 15 C 1.38077 * 131.50101 * 196.11921 * 14 4 3 16 16 C 1.38240 * 120.17769 * 179.33727 * 15 14 4 17 17 C 1.38319 * 119.92614 * 0.02562 * 16 15 14 18 18 C 1.38297 * 120.19624 * 0.13132 * 17 16 15 19 19 O 1.36002 * 119.94699 * 179.97438 * 18 17 16 20 20 C 1.38759 * 107.99354 * 15.78783 * 14 4 3 21 21 H 1.09002 * 109.47162 * 300.00129 * 1 2 3 22 22 H 1.08999 * 109.47048 * 60.00952 * 1 2 3 23 23 H 1.09006 * 109.46935 * 180.02562 * 1 2 3 24 24 H 1.08999 * 110.78742 * 30.83029 * 3 2 1 25 25 H 1.09001 * 110.94362 * 267.45887 * 3 2 1 26 26 H 0.96998 * 120.00733 * 180.02562 * 9 8 6 27 27 H 1.08004 * 119.91290 * 359.38540 * 15 14 4 28 28 H 1.08005 * 120.03832 * 180.29992 * 16 15 14 29 29 H 1.07999 * 119.90710 * 180.11293 * 17 16 15 30 30 H 0.96705 * 113.99629 * 90.00426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3286 1.2319 0.7746 5 1 3.5162 2.1106 1.3916 6 6 4.4772 0.9917 -0.1710 7 1 4.7318 -0.0154 -0.4665 8 6 5.2030 2.0575 -0.6590 9 7 6.2284 1.8457 -1.4548 10 14 4.7300 3.8026 -0.1897 11 1 5.3562 4.1526 1.1106 12 1 5.2046 4.7428 -1.2366 13 1 3.2530 3.9000 -0.0699 14 6 3.0814 0.0118 1.6393 15 6 3.7431 -0.4713 2.7507 16 6 3.3009 -1.6214 3.3774 17 6 2.1929 -2.2905 2.8898 18 6 1.5274 -1.8140 1.7751 19 8 0.4388 -2.4762 1.2996 20 6 1.9719 -0.6525 1.1361 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.3207 2.0557 0.5223 25 1 2.1808 1.7285 -1.0170 26 1 6.7392 2.5955 -1.7978 27 1 4.6081 0.0512 3.1319 28 1 3.8174 -1.9946 4.2495 29 1 1.8466 -3.1880 3.3807 30 1 -0.3990 -2.1814 1.6822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -1.158694 kcal Electronic energy + Delta-G solvation = -14827.369111 eV Core-core repulsion = 12394.995573 eV Total energy + Delta-G solvation = -2432.373537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27854 -37.22935 -35.77141 -33.10226 -31.14742 -28.88628 -28.46148 -25.81591 -23.83144 -22.20413 -20.76818 -20.07817 -17.43987 -17.02816 -15.91063 -15.40807 -15.08167 -14.49115 -14.13363 -13.84504 -13.38474 -12.92327 -12.35033 -12.13529 -11.95393 -11.75150 -11.64224 -11.05344 -10.91260 -10.74204 -10.22037 -10.01146 -9.82530 -9.44114 -9.29402 -8.63777 -7.99170 -7.04128 -6.13193 -4.13356 1.80401 1.93733 3.21795 3.30250 3.31376 4.14511 4.33614 4.35720 4.58556 5.11454 5.30987 5.45326 5.50584 5.59066 5.78643 5.89977 5.97920 6.03248 6.14425 6.19891 6.38635 6.62935 6.77766 6.85701 6.92973 7.20573 7.29954 7.48369 7.61784 7.68531 8.08148 8.46881 8.95691 9.46095 10.99558 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.010517 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.836542 B = 2661.747386 C = 3077.528535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.460 5.460 3 C 0.041 3.959 4 C 0.048 3.952 5 H 0.048 0.952 6 C -0.495 4.495 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.893 5.893 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.265 1.265 14 C -0.080 4.080 15 C -0.090 4.090 16 C -0.138 4.138 17 C -0.137 4.137 18 C 0.068 3.932 19 O -0.493 6.493 20 C 0.072 3.928 21 H 0.025 0.975 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.093 0.907 26 H 0.266 0.734 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 -2.288 8.292 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.173 5.173 3 C -0.085 4.085 4 C 0.029 3.971 5 H 0.066 0.934 6 C -0.532 4.532 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.530 5.530 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.190 1.190 14 C -0.083 4.083 15 C -0.109 4.109 16 C -0.157 4.157 17 C -0.156 4.156 18 C 0.021 3.979 19 O -0.302 6.302 20 C -0.028 4.028 21 H 0.044 0.956 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.994 -2.704 7.274 12.653 hybrid contribution -0.723 1.472 0.884 1.863 sum -10.717 -1.232 8.158 13.524 Atomic orbital electron populations 1.22628 0.87583 1.02959 1.00540 1.60501 1.07374 1.15852 1.33553 1.23819 0.96720 0.85266 1.02678 1.19006 0.93991 0.91368 0.92762 0.93419 1.20675 1.11439 0.95726 1.25386 0.90443 1.25028 0.94422 0.98778 0.94661 1.69881 1.18474 1.31715 1.32973 0.86920 0.79500 0.84976 0.78550 1.20006 1.21239 1.18974 1.20925 0.94110 0.98998 0.94264 1.20457 0.99117 0.96087 0.95249 1.20768 0.97659 0.96278 1.01006 1.20889 0.98049 1.00586 0.96085 1.17792 0.91863 0.92641 0.95563 1.84963 1.15499 1.62192 1.67503 1.20097 0.97701 0.94557 0.90406 0.95598 0.91243 0.90088 0.94923 0.88828 0.92433 0.86042 0.86176 0.86072 0.77507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.03 60.06 0.54 0.69 16 2 N -0.46 -9.48 5.32 -176.67 -0.94 -10.42 16 3 C 0.04 0.88 5.90 -2.42 -0.01 0.87 16 4 C 0.05 1.13 2.44 -91.65 -0.22 0.91 16 5 H 0.05 1.10 6.07 -51.93 -0.32 0.78 16 6 C -0.49 -13.88 8.89 -34.44 -0.31 -14.18 16 7 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 10 Si 0.87 20.63 26.78 -169.99 -4.55 16.07 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -5.86 6.77 56.52 0.38 -5.48 16 14 C -0.08 -1.74 5.55 -104.06 -0.58 -2.32 16 15 C -0.09 -1.73 10.03 -39.64 -0.40 -2.13 16 16 C -0.14 -2.25 10.05 -39.55 -0.40 -2.65 16 17 C -0.14 -2.22 9.96 -39.53 -0.39 -2.61 16 18 C 0.07 1.23 6.60 -38.97 -0.26 0.98 16 19 O -0.49 -7.68 11.39 -19.75 -0.22 -7.90 16 20 C 0.07 1.48 5.96 -83.18 -0.50 0.99 16 21 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.08 1.16 5.67 -51.93 -0.29 0.87 16 24 H 0.03 0.62 7.84 -51.93 -0.41 0.21 16 25 H 0.09 2.10 7.91 -51.93 -0.41 1.68 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 28 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.37 3.89 8.56 45.56 0.39 4.28 16 LS Contribution 251.15 15.07 3.78 3.78 Total: -1.00 -31.78 251.15 -6.50 -38.28 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.73 Total: 3.83 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.62 Total: -17.49 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.17 Total: -36.58 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.22 Total: -7.90 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.55 Total: 16.07 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.78 -6.50 -38.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds