Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47918 * 110.99849 * 2 1 4 4 C 1.54596 * 102.60407 * 149.10851 * 3 2 1 5 5 H 1.08994 * 110.73100 * 216.14526 * 4 3 2 6 6 C 1.50706 * 110.88344 * 92.92120 * 4 3 2 7 7 H 1.07997 * 120.00021 * 271.61162 * 6 4 3 8 8 C 1.37872 * 119.99935 * 91.60501 * 6 4 3 9 9 N 1.31515 * 120.00427 * 178.12035 * 8 6 4 10 10 Si 1.86799 * 120.00136 * 358.11993 * 8 6 4 11 11 H 1.48505 * 109.47083 * 84.91221 * 10 8 6 12 12 H 1.48498 * 109.47727 * 204.91125 * 10 8 6 13 13 H 1.48499 * 109.47302 * 324.91510 * 10 8 6 14 14 C 1.51579 * 102.89192 * 334.50171 * 4 3 2 15 15 C 1.38077 * 131.50101 * 196.11921 * 14 4 3 16 16 C 1.38240 * 120.17769 * 179.33727 * 15 14 4 17 17 C 1.38319 * 119.92614 * 0.02562 * 16 15 14 18 18 C 1.38297 * 120.19624 * 0.13132 * 17 16 15 19 19 O 1.36002 * 119.94699 * 179.97438 * 18 17 16 20 20 C 1.38759 * 107.99354 * 15.78783 * 14 4 3 21 21 H 1.09002 * 109.47162 * 300.00129 * 1 2 3 22 22 H 1.08999 * 109.47048 * 60.00952 * 1 2 3 23 23 H 1.09006 * 109.46935 * 180.02562 * 1 2 3 24 24 H 1.08999 * 110.78742 * 30.83029 * 3 2 1 25 25 H 1.09001 * 110.94362 * 267.45887 * 3 2 1 26 26 H 0.96998 * 120.00733 * 180.02562 * 9 8 6 27 27 H 1.08004 * 119.91290 * 359.38540 * 15 14 4 28 28 H 1.08005 * 120.03832 * 180.29992 * 16 15 14 29 29 H 1.07999 * 119.90710 * 180.11293 * 17 16 15 30 30 H 0.96705 * 113.99629 * 90.00426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3286 1.2319 0.7746 5 1 3.5162 2.1106 1.3916 6 6 4.4772 0.9917 -0.1710 7 1 4.7318 -0.0154 -0.4665 8 6 5.2030 2.0575 -0.6590 9 7 6.2284 1.8457 -1.4548 10 14 4.7300 3.8026 -0.1897 11 1 5.3562 4.1526 1.1106 12 1 5.2046 4.7428 -1.2366 13 1 3.2530 3.9000 -0.0699 14 6 3.0814 0.0118 1.6393 15 6 3.7431 -0.4713 2.7507 16 6 3.3009 -1.6214 3.3774 17 6 2.1929 -2.2905 2.8898 18 6 1.5274 -1.8140 1.7751 19 8 0.4388 -2.4762 1.2996 20 6 1.9719 -0.6525 1.1361 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.3207 2.0557 0.5223 25 1 2.1808 1.7285 -1.0170 26 1 6.7392 2.5955 -1.7978 27 1 4.6081 0.0512 3.1319 28 1 3.8174 -1.9946 4.2495 29 1 1.8466 -3.1880 3.3807 30 1 -0.3990 -2.1814 1.6822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -25.237572 kcal Electronic energy + Delta-G solvation = -14828.413249 eV Core-core repulsion = 12394.995573 eV Total energy + Delta-G solvation = -2433.417676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72640 -38.59101 -37.11680 -35.07612 -32.89259 -30.31679 -29.93063 -27.50352 -25.46887 -23.69640 -22.17949 -21.70611 -19.10124 -18.79010 -17.35547 -16.82898 -16.63312 -16.02782 -15.82424 -15.17024 -14.86749 -14.74307 -13.88914 -13.55368 -13.51286 -13.21391 -13.09513 -12.81019 -12.43526 -12.35677 -11.85980 -11.74971 -11.52519 -11.22330 -10.76902 -10.75338 -9.42768 -8.49594 -8.30371 -6.36516 0.42563 0.53314 1.34792 1.36806 1.48054 2.33251 2.76387 2.90916 3.02055 3.35782 3.86519 4.12243 4.20143 4.24669 4.41641 4.48851 4.54891 4.66176 4.69984 4.89100 4.95155 5.04837 5.20620 5.41432 5.50927 5.55620 5.75360 5.86997 6.07575 6.26963 6.36521 6.68199 6.92432 7.27128 8.86667 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.010517 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.836542 B = 2661.747386 C = 3077.528535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.488 5.488 3 C 0.048 3.952 4 C 0.043 3.957 5 H 0.052 0.948 6 C -0.497 4.497 7 H 0.017 0.983 8 C 0.013 3.987 9 N -0.948 5.948 10 Si 0.947 3.053 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.239 1.239 14 C -0.121 4.121 15 C -0.108 4.108 16 C -0.128 4.128 17 C -0.129 4.129 18 C 0.071 3.929 19 O -0.497 6.497 20 C 0.050 3.950 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.268 0.732 27 H 0.122 0.878 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 -2.334 10.373 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.202 5.202 3 C -0.079 4.079 4 C 0.024 3.976 5 H 0.070 0.930 6 C -0.535 4.535 7 H 0.035 0.965 8 C -0.184 4.184 9 N -0.588 5.588 10 Si 0.769 3.231 11 H -0.188 1.188 12 H -0.212 1.212 13 H -0.162 1.162 14 C -0.125 4.125 15 C -0.126 4.126 16 C -0.147 4.147 17 C -0.147 4.147 18 C 0.023 3.977 19 O -0.309 6.309 20 C -0.049 4.049 21 H 0.062 0.938 22 H 0.098 0.902 23 H 0.111 0.889 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -12.302 -2.766 9.376 15.713 hybrid contribution -0.054 1.280 0.256 1.306 sum -12.355 -1.486 9.632 15.737 Atomic orbital electron populations 1.22732 0.84711 1.04227 1.01892 1.60478 1.10208 1.15142 1.34327 1.23555 0.96100 0.86856 1.01349 1.18899 0.93352 0.92868 0.92480 0.92995 1.20757 1.13290 0.93059 1.26382 0.96464 1.25986 0.94079 1.03994 0.94390 1.70057 1.20332 1.33347 1.35048 0.85748 0.80734 0.78177 0.78422 1.18763 1.21158 1.16184 1.20957 0.96161 0.99359 0.95981 1.20703 0.99317 0.97482 0.95140 1.21166 0.97371 0.94686 1.01434 1.21327 0.97133 1.01150 0.95111 1.17942 0.92681 0.91619 0.95444 1.84892 1.16239 1.61746 1.68002 1.20347 0.97927 0.95816 0.90792 0.93782 0.90249 0.88872 0.92104 0.90798 0.92319 0.85993 0.82426 0.82414 0.74572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.03 127.69 1.15 1.45 16 2 N -0.49 -19.76 5.32 -712.86 -3.79 -23.56 16 3 C 0.05 2.02 5.90 86.65 0.51 2.53 16 4 C 0.04 2.07 2.44 -11.46 -0.03 2.04 16 5 H 0.05 2.37 6.07 -2.39 -0.01 2.36 16 6 C -0.50 -29.29 8.89 25.60 0.23 -29.06 16 7 H 0.02 1.17 8.06 -2.91 -0.02 1.15 16 8 C 0.01 0.74 5.47 84.65 0.46 1.20 16 9 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 10 Si 0.95 43.04 26.78 68.60 1.84 44.88 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.24 -9.74 6.77 99.48 0.67 -9.07 16 14 C -0.12 -5.31 5.55 -19.50 -0.11 -5.42 16 15 C -0.11 -4.05 10.03 22.23 0.22 -3.83 16 16 C -0.13 -3.79 10.05 22.29 0.22 -3.56 16 17 C -0.13 -3.68 9.96 22.30 0.22 -3.46 16 18 C 0.07 2.36 6.60 22.67 0.15 2.51 16 19 O -0.50 -13.79 11.39 -93.57 -1.07 -14.85 16 20 C 0.05 2.03 5.96 38.29 0.23 2.26 16 21 H 0.04 1.10 8.09 -2.39 -0.02 1.08 16 22 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.09 2.41 5.67 -2.38 -0.01 2.40 16 24 H 0.06 2.18 7.84 -2.39 -0.02 2.17 16 25 H 0.07 3.34 7.91 -2.39 -0.02 3.32 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 29 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.40 6.69 8.56 -74.05 -0.63 6.06 16 Total: -1.00 -72.78 251.15 1.03 -71.75 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.48 Total: 14.76 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.27 Total: -33.36 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -3.49 Total: -83.18 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.07 Total: -14.85 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.84 Total: 44.88 kcal Total: -72.78 1.03 -71.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.515 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds