Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40330 * 111.00020 * 2 1 4 4 C 1.39364 * 129.89428 * 40.21284 * 3 2 1 5 5 C 1.37908 * 120.26655 * 179.32306 * 4 3 2 6 6 C 1.38723 * 120.20249 * 0.27609 * 5 4 3 7 7 O 1.36001 * 120.11364 * 179.84844 * 6 5 4 8 8 C 1.38711 * 119.77053 * 359.59401 * 6 5 4 9 9 C 1.37936 * 120.03868 * 0.48579 * 8 6 5 10 10 C 1.51579 * 131.49414 * 179.41839 * 9 8 6 11 11 C 1.47912 * 111.00117 * 240.08128 * 2 1 3 12 12 H 1.09009 * 110.93883 * 30.73892 * 11 2 1 13 13 C 1.50695 * 110.77928 * 267.38279 * 11 2 1 14 14 H 1.08002 * 119.99925 * 341.60563 * 13 11 2 15 15 C 1.37880 * 119.99977 * 161.60982 * 13 11 2 16 16 N 1.31513 * 119.99947 * 185.81076 * 15 13 11 17 17 Si 1.86798 * 120.00081 * 5.80495 * 15 13 11 18 18 H 1.48502 * 109.47135 * 84.83624 * 17 15 13 19 19 H 1.48497 * 109.47315 * 204.83920 * 17 15 13 20 20 H 1.48500 * 109.47012 * 324.83740 * 17 15 13 21 21 H 1.09000 * 109.46981 * 54.70615 * 1 2 3 22 22 H 1.09006 * 109.47197 * 174.70128 * 1 2 3 23 23 H 1.08997 * 109.47229 * 294.70298 * 1 2 3 24 24 H 1.07998 * 119.86730 * 359.34199 * 4 3 2 25 25 H 1.08004 * 119.89808 * 179.97438 * 5 4 3 26 26 H 0.96697 * 114.00097 * 90.00044 * 7 6 5 27 27 H 1.07995 * 119.97730 * 180.23168 * 8 6 5 28 28 H 1.08991 * 110.73293 * 314.44025 * 10 9 8 29 29 H 1.08995 * 110.73286 * 77.57055 * 10 9 8 30 30 H 0.97000 * 119.99724 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9719 1.3101 0.0000 4 6 1.5300 2.4372 0.6903 5 6 2.1901 3.6401 0.5522 6 6 3.2958 3.7379 -0.2798 7 8 3.9436 4.9258 -0.4171 8 6 3.7416 2.6185 -0.9672 9 6 3.0806 1.4156 -0.8305 10 6 3.3286 0.0568 -1.4548 11 6 1.9991 -0.6887 -1.1968 12 1 1.3218 -0.5755 -2.0434 13 6 2.2508 -2.1461 -0.9075 14 1 2.3323 -2.4876 0.1139 15 6 2.3771 -3.0435 -1.9466 16 7 2.4823 -4.3300 -1.6952 17 14 2.3988 -2.4318 -3.7115 18 1 3.7795 -2.0259 -4.0777 19 1 1.9453 -3.5176 -4.6173 20 1 1.4889 -1.2656 -3.8424 21 1 -0.3633 0.5938 -0.8388 22 1 -0.3634 -1.0233 -0.0949 23 1 -0.3633 0.4295 0.9336 24 1 0.6672 2.3682 1.3363 25 1 1.8422 4.5099 1.0897 26 1 4.6586 5.0598 0.2199 27 1 4.6043 2.6900 -1.6129 28 1 3.5164 0.1520 -2.5241 29 1 4.1593 -0.4484 -0.9620 30 1 2.5708 -4.9614 -2.4263 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = -3.179251 kcal Electronic energy + Delta-G solvation = -14559.472214 eV Core-core repulsion = 12127.011059 eV Total energy + Delta-G solvation = -2432.461155 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19659 -37.94521 -34.99265 -32.81855 -31.99893 -29.00430 -28.61865 -25.04809 -24.93277 -21.53284 -21.00345 -20.06245 -17.70253 -17.12097 -16.00524 -15.72984 -14.96450 -14.55336 -13.92694 -13.74107 -13.29748 -12.73208 -12.68886 -12.35352 -12.10515 -11.91624 -11.44307 -11.09477 -10.87637 -10.72922 -10.43905 -10.12931 -10.01522 -9.65266 -8.98647 -8.66722 -8.46968 -6.97679 -6.21522 -4.21981 1.64504 1.70166 3.18507 3.25606 3.27682 3.92784 4.26857 4.36322 4.60028 5.04595 5.15980 5.28782 5.55805 5.71114 5.76658 5.88225 5.91772 6.09031 6.21709 6.31383 6.40861 6.47697 6.57893 6.70499 6.78529 7.00815 7.11265 7.46284 7.60456 7.82702 7.96414 8.46080 8.90255 9.38978 10.90630 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.008883 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.086934 B = 3151.274807 C = 3561.357172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.465 5.465 3 C 0.105 3.895 4 C -0.139 4.139 5 C -0.122 4.122 6 C 0.055 3.945 7 O -0.501 6.501 8 C -0.109 4.109 9 C -0.125 4.125 10 C -0.091 4.091 11 C 0.179 3.821 12 H 0.035 0.965 13 C -0.502 4.502 14 H 0.086 0.914 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.866 3.134 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.265 1.265 21 H 0.027 0.973 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.379 0.621 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 13.007 1.916 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.176 5.176 3 C 0.004 3.996 4 C -0.160 4.160 5 C -0.141 4.141 6 C 0.010 3.990 7 O -0.309 6.309 8 C -0.128 4.128 9 C -0.128 4.128 10 C -0.129 4.129 11 C 0.074 3.926 12 H 0.053 0.947 13 C -0.540 4.540 14 H 0.104 0.896 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.693 3.307 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.190 1.190 21 H 0.046 0.954 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.138 0.862 25 H 0.141 0.859 26 H 0.233 0.767 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.457 12.489 1.806 12.627 hybrid contribution 0.238 0.519 -1.123 1.260 sum -0.219 13.008 0.683 13.027 Atomic orbital electron populations 1.22397 0.86670 1.02954 0.99976 1.60485 1.08166 1.08225 1.40756 1.20070 0.95825 0.89394 0.94301 1.20243 1.02018 0.90777 1.03005 1.20953 0.96828 0.97295 0.99023 1.18090 0.95611 0.84964 1.00364 1.84858 1.51439 1.34935 1.59703 1.20607 1.00322 0.90953 1.00896 1.20790 0.97468 0.95445 0.99094 1.21928 1.02004 0.89909 0.99100 1.20937 0.90588 0.95113 0.85920 0.94693 1.20760 1.49270 0.88095 0.95884 0.89631 1.24895 0.94409 0.94600 0.98684 1.69880 1.49036 1.01180 1.32556 0.87060 0.79348 0.78906 0.85365 1.19584 1.21052 1.18994 0.95429 0.89937 0.92043 0.86188 0.85909 0.76688 0.86119 0.92097 0.89027 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.08 60.07 0.55 1.03 16 2 N -0.46 -9.96 4.98 -170.58 -0.85 -10.81 16 3 C 0.10 2.05 5.94 -83.29 -0.49 1.55 16 4 C -0.14 -2.28 9.54 -39.28 -0.37 -2.65 16 5 C -0.12 -1.82 9.96 -39.52 -0.39 -2.22 16 6 C 0.05 0.86 6.71 -39.23 -0.26 0.59 16 7 O -0.50 -6.69 13.51 -19.74 -0.27 -6.96 16 8 C -0.11 -1.85 9.97 -39.52 -0.39 -2.25 16 9 C -0.12 -2.44 6.23 -104.05 -0.65 -3.09 16 10 C -0.09 -1.96 5.92 -26.61 -0.16 -2.12 16 11 C 0.18 4.21 1.94 -67.47 -0.13 4.08 16 12 H 0.04 0.84 5.78 -51.92 -0.30 0.54 16 13 C -0.50 -13.69 9.22 -34.44 -0.32 -14.00 16 14 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 17 Si 0.87 20.49 26.41 -169.99 -4.49 16.00 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.26 -6.05 6.19 56.52 0.35 -5.70 16 21 H 0.03 0.47 8.11 -51.93 -0.42 0.05 16 22 H 0.08 1.56 8.13 -51.93 -0.42 1.13 16 23 H 0.06 0.95 7.57 -51.93 -0.39 0.55 16 24 H 0.12 1.71 7.53 -52.49 -0.40 1.32 16 25 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 26 H 0.38 3.17 9.06 45.56 0.41 3.59 16 27 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.06 1.25 7.34 -51.93 -0.38 0.86 16 29 H 0.09 2.02 7.91 -51.93 -0.41 1.61 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 253.18 15.07 3.82 3.82 Total: -1.00 -30.33 253.18 -6.51 -36.84 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.77 Total: 3.51 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.73 Total: -17.03 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.08 Total: -36.17 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.27 Total: -6.96 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.49 Total: 16.00 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.33 -6.51 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.662 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds