Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.40330 * 111.00020 * 2 1 4 4 C 1.39364 * 129.89428 * 40.21284 * 3 2 1 5 5 C 1.37908 * 120.26655 * 179.32306 * 4 3 2 6 6 C 1.38723 * 120.20249 * 0.27609 * 5 4 3 7 7 O 1.36001 * 120.11364 * 179.84844 * 6 5 4 8 8 C 1.38711 * 119.77053 * 359.59401 * 6 5 4 9 9 C 1.37936 * 120.03868 * 0.48579 * 8 6 5 10 10 C 1.51579 * 131.49414 * 179.41839 * 9 8 6 11 11 C 1.47912 * 111.00117 * 240.08128 * 2 1 3 12 12 H 1.09009 * 110.93883 * 30.73892 * 11 2 1 13 13 C 1.50695 * 110.77928 * 267.38279 * 11 2 1 14 14 H 1.08002 * 119.99925 * 341.60563 * 13 11 2 15 15 C 1.37880 * 119.99977 * 161.60982 * 13 11 2 16 16 N 1.31513 * 119.99947 * 185.81076 * 15 13 11 17 17 Si 1.86798 * 120.00081 * 5.80495 * 15 13 11 18 18 H 1.48502 * 109.47135 * 84.83624 * 17 15 13 19 19 H 1.48497 * 109.47315 * 204.83920 * 17 15 13 20 20 H 1.48500 * 109.47012 * 324.83740 * 17 15 13 21 21 H 1.09000 * 109.46981 * 54.70615 * 1 2 3 22 22 H 1.09006 * 109.47197 * 174.70128 * 1 2 3 23 23 H 1.08997 * 109.47229 * 294.70298 * 1 2 3 24 24 H 1.07998 * 119.86730 * 359.34199 * 4 3 2 25 25 H 1.08004 * 119.89808 * 179.97438 * 5 4 3 26 26 H 0.96697 * 114.00097 * 90.00044 * 7 6 5 27 27 H 1.07995 * 119.97730 * 180.23168 * 8 6 5 28 28 H 1.08991 * 110.73293 * 314.44025 * 10 9 8 29 29 H 1.08995 * 110.73286 * 77.57055 * 10 9 8 30 30 H 0.97000 * 119.99724 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9719 1.3101 0.0000 4 6 1.5300 2.4372 0.6903 5 6 2.1901 3.6401 0.5522 6 6 3.2958 3.7379 -0.2798 7 8 3.9436 4.9258 -0.4171 8 6 3.7416 2.6185 -0.9672 9 6 3.0806 1.4156 -0.8305 10 6 3.3286 0.0568 -1.4548 11 6 1.9991 -0.6887 -1.1968 12 1 1.3218 -0.5755 -2.0434 13 6 2.2508 -2.1461 -0.9075 14 1 2.3323 -2.4876 0.1139 15 6 2.3771 -3.0435 -1.9466 16 7 2.4823 -4.3300 -1.6952 17 14 2.3988 -2.4318 -3.7115 18 1 3.7795 -2.0259 -4.0777 19 1 1.9453 -3.5176 -4.6173 20 1 1.4889 -1.2656 -3.8424 21 1 -0.3633 0.5938 -0.8388 22 1 -0.3634 -1.0233 -0.0949 23 1 -0.3633 0.4295 0.9336 24 1 0.6672 2.3682 1.3363 25 1 1.8422 4.5099 1.0897 26 1 4.6586 5.0598 0.2199 27 1 4.6043 2.6900 -1.6129 28 1 3.5164 0.1520 -2.5241 29 1 4.1593 -0.4484 -0.9620 30 1 2.5708 -4.9614 -2.4263 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = -25.637223 kcal Electronic energy + Delta-G solvation = -14560.446065 eV Core-core repulsion = 12127.011059 eV Total energy + Delta-G solvation = -2433.435006 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61839 -39.19644 -36.33510 -34.74723 -33.58357 -30.61299 -30.01444 -26.82491 -26.39825 -23.05469 -22.33255 -21.68534 -19.18640 -18.83861 -17.42102 -17.24464 -16.40789 -16.12344 -15.48482 -15.02946 -14.96824 -14.49622 -14.08957 -13.82436 -13.61181 -13.48464 -12.96769 -12.67322 -12.39620 -12.33252 -12.22403 -11.88450 -11.66548 -11.25283 -10.81624 -10.48560 -9.77632 -8.43420 -8.35261 -6.40736 0.36006 0.40862 1.31777 1.32042 1.40814 2.27560 2.62907 2.85641 3.12062 3.36343 3.78079 4.01245 4.15725 4.25585 4.34726 4.48193 4.54786 4.60133 4.68301 4.89687 4.94507 5.03458 5.10484 5.23389 5.46185 5.51070 5.59378 5.72049 5.96680 6.37000 6.49085 6.66385 6.96370 7.24227 8.81023 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.008883 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.086934 B = 3151.274807 C = 3561.357172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.489 5.489 3 C 0.076 3.924 4 C -0.131 4.131 5 C -0.114 4.114 6 C 0.069 3.931 7 O -0.503 6.503 8 C -0.115 4.115 9 C -0.146 4.146 10 C -0.088 4.088 11 C 0.181 3.819 12 H 0.031 0.969 13 C -0.505 4.505 14 H 0.037 0.963 15 C 0.024 3.976 16 N -0.939 5.939 17 Si 0.931 3.069 18 H -0.257 1.257 19 H -0.281 1.281 20 H -0.250 1.250 21 H 0.037 0.963 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.143 0.857 25 H 0.158 0.842 26 H 0.406 0.594 27 H 0.134 0.866 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 16.425 1.508 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.201 5.201 3 C -0.023 4.023 4 C -0.153 4.153 5 C -0.132 4.132 6 C 0.024 3.976 7 O -0.315 6.315 8 C -0.134 4.134 9 C -0.149 4.149 10 C -0.126 4.126 11 C 0.075 3.925 12 H 0.049 0.951 13 C -0.544 4.544 14 H 0.055 0.945 15 C -0.175 4.175 16 N -0.578 5.578 17 Si 0.754 3.246 18 H -0.182 1.182 19 H -0.207 1.207 20 H -0.174 1.174 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.108 0.892 24 H 0.161 0.839 25 H 0.176 0.824 26 H 0.263 0.737 27 H 0.152 0.848 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.562 15.950 1.427 16.024 hybrid contribution 0.309 -0.404 -0.852 0.992 sum -0.253 15.546 0.575 15.559 Atomic orbital electron populations 1.22449 0.85288 1.02271 1.01926 1.60412 1.09778 1.09962 1.39975 1.20238 0.96534 0.89377 0.96162 1.20536 1.02462 0.90065 1.02194 1.21324 0.95878 0.97747 0.98298 1.18149 0.95506 0.84969 0.99012 1.84798 1.52398 1.33367 1.60946 1.20777 1.00633 0.90547 1.01405 1.20679 0.98651 0.95270 1.00340 1.21655 1.00013 0.91292 0.99606 1.20687 0.91784 0.93156 0.86867 0.95139 1.20861 1.48986 0.90741 0.93767 0.94455 1.25711 0.93942 0.94487 1.03355 1.70024 1.50959 1.02685 1.34125 0.86013 0.80254 0.78810 0.79486 1.18183 1.20668 1.17431 0.94446 0.91812 0.89152 0.83946 0.82422 0.73651 0.84801 0.91327 0.90896 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.08 127.69 1.16 2.12 16 2 N -0.49 -21.03 4.98 -693.58 -3.45 -24.48 16 3 C 0.08 2.87 5.94 38.22 0.23 3.10 16 4 C -0.13 -3.86 9.54 22.46 0.21 -3.65 16 5 C -0.11 -2.87 9.96 22.31 0.22 -2.65 16 6 C 0.07 1.87 6.71 22.50 0.15 2.02 16 7 O -0.50 -11.02 13.51 -93.56 -1.26 -12.28 16 8 C -0.11 -3.61 9.97 22.31 0.22 -3.38 16 9 C -0.15 -5.55 6.23 -19.49 -0.12 -5.67 16 10 C -0.09 -3.78 5.92 30.67 0.18 -3.59 16 11 C 0.18 8.64 1.94 44.51 0.09 8.73 16 12 H 0.03 1.48 5.78 -2.38 -0.01 1.46 16 13 C -0.51 -28.87 9.22 25.60 0.24 -28.64 16 14 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 15 C 0.02 1.38 5.47 84.66 0.46 1.84 16 16 N -0.94 -57.44 13.96 21.45 0.30 -57.14 16 17 Si 0.93 42.69 26.41 68.60 1.81 44.50 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.25 -10.79 6.19 99.48 0.62 -10.17 16 21 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 22 H 0.06 2.46 8.13 -2.38 -0.02 2.44 16 23 H 0.09 2.64 7.57 -2.39 -0.02 2.62 16 24 H 0.14 3.48 7.53 -2.91 -0.02 3.46 16 25 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 26 H 0.41 4.75 9.06 -74.06 -0.67 4.08 16 27 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.07 2.76 7.34 -2.39 -0.02 2.74 16 29 H 0.07 3.33 7.91 -2.39 -0.02 3.31 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -67.65 253.18 0.83 -66.82 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.39 Total: 12.35 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 3.04 Total: -29.77 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.15 Total: -81.62 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.26 Total: -12.28 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.81 Total: 44.50 kcal Total: -67.65 0.83 -66.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.185 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds