Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.40331 * 110.99907 * 2 1 4 4 C 1.39365 * 129.89174 * 283.68031 * 3 2 1 5 5 C 1.37902 * 120.26824 * 179.53113 * 4 3 2 6 6 C 1.38724 * 120.20711 * 359.77113 * 5 4 3 7 7 O 1.36000 * 120.11989 * 180.41479 * 6 5 4 8 8 C 1.38710 * 119.76413 * 0.65733 * 6 5 4 9 9 C 1.37939 * 120.03952 * 359.38725 * 8 6 5 10 10 C 1.51581 * 131.49771 * 179.88877 * 9 8 6 11 11 C 1.47910 * 110.99649 * 119.92693 * 2 1 3 12 12 H 1.08999 * 110.93804 * 23.83089 * 11 2 1 13 13 C 1.50702 * 110.77709 * 147.18438 * 11 2 1 14 14 H 1.07995 * 119.99784 * 113.21210 * 13 11 2 15 15 C 1.37875 * 120.00026 * 293.21505 * 13 11 2 16 16 N 1.31515 * 119.99821 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99910 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47191 * 60.00128 * 17 15 13 19 19 H 1.48504 * 109.46762 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47167 * 299.99629 * 17 15 13 21 21 H 1.09003 * 109.47308 * 300.07332 * 1 2 3 22 22 H 1.09002 * 109.46704 * 60.07231 * 1 2 3 23 23 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.86227 * 359.55008 * 4 3 2 25 25 H 1.08002 * 119.89595 * 180.02562 * 5 4 3 26 26 H 0.96694 * 113.99779 * 270.24284 * 7 6 5 27 27 H 1.08002 * 119.98135 * 179.67086 * 8 6 5 28 28 H 1.09002 * 110.73410 * 314.61814 * 10 9 8 29 29 H 1.09006 * 110.73287 * 77.74434 * 10 9 8 30 30 H 0.96998 * 119.99948 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9719 1.3101 0.0000 4 6 2.0561 2.2352 -1.0390 5 6 2.5854 3.4883 -0.8127 6 6 3.0335 3.8386 0.4526 7 8 3.5474 5.0779 0.6757 8 6 2.9603 2.9188 1.4882 9 6 2.4318 1.6649 1.2620 10 6 2.2313 0.4782 2.1835 11 6 1.9990 -0.6889 1.1968 12 1 1.2692 -1.3933 1.5959 13 6 3.2961 -1.3880 0.8806 14 1 4.2166 -1.0479 1.3315 15 6 3.3075 -2.4618 0.0158 16 7 2.1864 -2.8762 -0.5328 17 14 4.9154 -3.3278 -0.3766 18 1 5.5045 -3.8687 0.8747 19 1 4.6590 -4.4420 -1.3243 20 1 5.8607 -2.3618 -0.9916 21 1 -0.3634 0.5150 0.8893 22 1 -0.3633 0.5127 -0.8907 23 1 -0.3633 -1.0277 0.0005 24 1 1.7051 1.9696 -2.0252 25 1 2.6474 4.2007 -1.6221 26 1 4.5019 5.1393 0.5334 27 1 3.3132 3.1860 2.4734 28 1 3.1226 0.3025 2.7859 29 1 1.3598 0.6276 2.8210 30 1 2.1945 -3.6313 -1.1415 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -1.086640 kcal Electronic energy + Delta-G solvation = -14705.790390 eV Core-core repulsion = 12273.419977 eV Total energy + Delta-G solvation = -2432.370413 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.96288 -37.76519 -34.77451 -32.40709 -31.54828 -28.69606 -28.03693 -25.34326 -24.30395 -21.69868 -20.72447 -19.92116 -17.51569 -16.82858 -15.66934 -15.04294 -14.82793 -14.46131 -13.90610 -13.35100 -13.17841 -12.55574 -12.34208 -12.11942 -11.93985 -11.30397 -11.27886 -10.98918 -10.76719 -10.71978 -10.62225 -9.92728 -9.67739 -9.21413 -8.51650 -8.35875 -8.24297 -6.71757 -6.01525 -4.11610 1.85530 1.92668 3.31599 3.36145 3.39294 4.14547 4.41730 4.59371 4.82045 5.36838 5.43041 5.48007 5.83756 5.97238 6.04233 6.14210 6.20835 6.23725 6.41309 6.51547 6.64146 6.68940 6.87810 6.89176 7.04741 7.23919 7.35987 7.85042 8.01173 8.10884 8.33598 8.47918 8.93783 9.56844 11.05715 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033185 B = 0.009471 C = 0.008727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.542143 B = 2955.583940 C = 3207.702353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.470 5.470 3 C 0.126 3.874 4 C -0.119 4.119 5 C -0.131 4.131 6 C 0.058 3.942 7 O -0.502 6.502 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.108 4.108 11 C 0.217 3.783 12 H 0.054 0.946 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.083 3.917 16 N -0.864 5.864 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.011 0.989 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.378 0.622 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 8.515 1.224 8.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.186 5.186 3 C 0.027 3.973 4 C -0.140 4.140 5 C -0.150 4.150 6 C 0.013 3.987 7 O -0.311 6.311 8 C -0.136 4.136 9 C -0.125 4.125 10 C -0.146 4.146 11 C 0.114 3.886 12 H 0.072 0.928 13 C -0.556 4.556 14 H 0.076 0.924 15 C -0.123 4.123 16 N -0.499 5.499 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.030 0.970 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.232 0.768 27 H 0.134 0.866 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.724 8.148 0.775 8.217 hybrid contribution 1.244 -0.169 0.119 1.261 sum 0.520 7.979 0.894 8.045 Atomic orbital electron populations 1.22238 0.87883 1.01872 0.98518 1.60663 1.05505 1.07856 1.44529 1.20030 0.95436 0.89676 0.92155 1.20330 1.02992 0.92479 0.98176 1.20963 1.01797 0.96256 0.95999 1.18088 1.03021 0.84809 0.92736 1.84841 1.26940 1.27665 1.91652 1.20525 1.01932 0.92282 0.98872 1.21097 1.01078 0.94138 0.96186 1.21926 1.00851 0.93729 0.98136 1.20284 0.96520 0.89513 0.82316 0.92820 1.20862 0.92640 1.13347 1.28729 0.92441 1.24945 0.96001 0.96382 0.95022 1.69967 1.25889 1.25203 1.28856 0.86708 0.84180 0.79107 0.78225 1.20217 1.21250 1.20232 0.97026 0.93147 0.90740 0.86203 0.86136 0.76783 0.86643 0.90414 0.92382 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.29 60.07 0.56 1.39 16 2 N -0.47 -11.15 4.79 -170.58 -0.82 -11.96 16 3 C 0.13 2.75 5.54 -83.29 -0.46 2.29 16 4 C -0.12 -2.30 10.06 -39.29 -0.40 -2.70 16 5 C -0.13 -2.25 9.96 -39.52 -0.39 -2.64 16 6 C 0.06 1.00 6.71 -39.23 -0.26 0.74 16 7 O -0.50 -7.41 13.51 -19.74 -0.27 -7.68 16 8 C -0.12 -2.16 9.97 -39.52 -0.39 -2.55 16 9 C -0.12 -2.54 6.22 -104.04 -0.65 -3.19 16 10 C -0.11 -2.28 6.49 -26.61 -0.17 -2.45 16 11 C 0.22 5.34 2.43 -67.47 -0.16 5.17 16 12 H 0.05 1.38 7.77 -51.93 -0.40 0.98 16 13 C -0.52 -14.06 8.70 -34.44 -0.30 -14.36 16 14 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 15 C 0.08 2.27 5.44 -17.82 -0.10 2.17 16 16 N -0.86 -24.38 13.12 55.43 0.73 -23.65 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.07 1.56 8.11 -51.93 -0.42 1.14 16 24 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 26 H 0.38 3.75 9.06 45.56 0.41 4.16 16 27 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.08 1.60 7.78 -51.93 -0.40 1.19 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -30.04 260.36 -7.07 -37.12 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.89 Total: 2.23 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.73 Total: -16.12 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.09 Total: -35.62 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.27 Total: -7.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.04 -7.07 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.029 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds