Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.40331 * 110.99907 * 2 1 4 4 C 1.39365 * 129.89174 * 283.68031 * 3 2 1 5 5 C 1.37902 * 120.26824 * 179.53113 * 4 3 2 6 6 C 1.38724 * 120.20711 * 359.77113 * 5 4 3 7 7 O 1.36000 * 120.11989 * 180.41479 * 6 5 4 8 8 C 1.38710 * 119.76413 * 0.65733 * 6 5 4 9 9 C 1.37939 * 120.03952 * 359.38725 * 8 6 5 10 10 C 1.51581 * 131.49771 * 179.88877 * 9 8 6 11 11 C 1.47910 * 110.99649 * 119.92693 * 2 1 3 12 12 H 1.08999 * 110.93804 * 23.83089 * 11 2 1 13 13 C 1.50702 * 110.77709 * 147.18438 * 11 2 1 14 14 H 1.07995 * 119.99784 * 113.21210 * 13 11 2 15 15 C 1.37875 * 120.00026 * 293.21505 * 13 11 2 16 16 N 1.31515 * 119.99821 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99910 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47191 * 60.00128 * 17 15 13 19 19 H 1.48504 * 109.46762 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47167 * 299.99629 * 17 15 13 21 21 H 1.09003 * 109.47308 * 300.07332 * 1 2 3 22 22 H 1.09002 * 109.46704 * 60.07231 * 1 2 3 23 23 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.86227 * 359.55008 * 4 3 2 25 25 H 1.08002 * 119.89595 * 180.02562 * 5 4 3 26 26 H 0.96694 * 113.99779 * 270.24284 * 7 6 5 27 27 H 1.08002 * 119.98135 * 179.67086 * 8 6 5 28 28 H 1.09002 * 110.73410 * 314.61814 * 10 9 8 29 29 H 1.09006 * 110.73287 * 77.74434 * 10 9 8 30 30 H 0.96998 * 119.99948 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9719 1.3101 0.0000 4 6 2.0561 2.2352 -1.0390 5 6 2.5854 3.4883 -0.8127 6 6 3.0335 3.8386 0.4526 7 8 3.5474 5.0779 0.6757 8 6 2.9603 2.9188 1.4882 9 6 2.4318 1.6649 1.2620 10 6 2.2313 0.4782 2.1835 11 6 1.9990 -0.6889 1.1968 12 1 1.2692 -1.3933 1.5959 13 6 3.2961 -1.3880 0.8806 14 1 4.2166 -1.0479 1.3315 15 6 3.3075 -2.4618 0.0158 16 7 2.1864 -2.8762 -0.5328 17 14 4.9154 -3.3278 -0.3766 18 1 5.5045 -3.8687 0.8747 19 1 4.6590 -4.4420 -1.3243 20 1 5.8607 -2.3618 -0.9916 21 1 -0.3634 0.5150 0.8893 22 1 -0.3633 0.5127 -0.8907 23 1 -0.3633 -1.0277 0.0005 24 1 1.7051 1.9696 -2.0252 25 1 2.6474 4.2007 -1.6221 26 1 4.5019 5.1393 0.5334 27 1 3.3132 3.1860 2.4734 28 1 3.1226 0.3025 2.7859 29 1 1.3598 0.6276 2.8210 30 1 2.1945 -3.6313 -1.1415 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -21.674758 kcal Electronic energy + Delta-G solvation = -14706.683157 eV Core-core repulsion = 12273.419977 eV Total energy + Delta-G solvation = -2433.263181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50736 -39.14189 -36.23848 -34.38834 -33.13408 -30.31122 -29.60703 -27.14815 -26.00577 -23.31434 -22.15625 -21.61919 -18.84054 -18.74541 -17.20008 -16.70673 -16.34627 -16.17115 -15.55358 -14.82123 -14.79850 -14.16155 -14.07742 -13.72817 -13.50225 -13.02388 -12.80398 -12.74353 -12.51464 -12.42052 -12.34449 -11.56910 -11.34527 -11.08983 -10.57986 -9.91112 -9.69970 -8.37461 -8.04053 -6.23489 0.42359 0.47765 1.42368 1.43953 1.50823 2.44187 2.73116 2.98771 3.35174 3.53430 3.89732 4.08936 4.32164 4.46696 4.48205 4.55971 4.58751 4.69990 4.85773 5.00272 5.01249 5.16131 5.24965 5.38485 5.52519 5.67749 5.78562 5.87977 6.20069 6.50353 6.75472 6.90825 6.97939 7.47653 8.99163 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033185 B = 0.009471 C = 0.008727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.542143 B = 2955.583940 C = 3207.702353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.494 5.494 3 C 0.090 3.910 4 C -0.125 4.125 5 C -0.125 4.125 6 C 0.073 3.927 7 O -0.502 6.502 8 C -0.122 4.122 9 C -0.138 4.138 10 C -0.100 4.100 11 C 0.212 3.788 12 H 0.029 0.971 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.035 3.965 16 N -0.892 5.892 17 Si 0.950 3.050 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.278 1.278 21 H 0.022 0.978 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.127 0.873 25 H 0.153 0.847 26 H 0.405 0.595 27 H 0.134 0.866 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 10.416 1.010 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.211 5.211 3 C -0.008 4.008 4 C -0.145 4.145 5 C -0.143 4.143 6 C 0.028 3.972 7 O -0.314 6.314 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.138 4.138 11 C 0.108 3.892 12 H 0.047 0.953 13 C -0.572 4.572 14 H 0.069 0.931 15 C -0.168 4.168 16 N -0.529 5.529 17 Si 0.776 3.224 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.204 1.204 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.145 0.855 25 H 0.171 0.829 26 H 0.262 0.738 27 H 0.152 0.848 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.312 10.071 0.567 10.091 hybrid contribution 0.941 -0.604 0.204 1.137 sum 1.253 9.467 0.772 9.580 Atomic orbital electron populations 1.22181 0.86775 1.01179 0.99766 1.60443 1.06892 1.09516 1.44213 1.20219 0.97423 0.89560 0.93603 1.20532 1.03084 0.92958 0.97925 1.21269 1.00273 0.95790 0.97016 1.18127 1.01709 0.85061 0.92264 1.84781 1.29214 1.25863 1.91541 1.20746 1.01471 0.91558 1.00296 1.21117 1.02377 0.94976 0.95659 1.21754 1.01461 0.92928 0.97665 1.20094 0.94930 0.90364 0.83841 0.95335 1.21159 0.93430 1.13931 1.28656 0.93130 1.25656 0.98922 0.97153 0.95045 1.70085 1.27557 1.25683 1.29536 0.85764 0.80479 0.77970 0.78221 1.19274 1.20879 1.20368 0.95938 0.91556 0.92369 0.85500 0.82921 0.73756 0.84786 0.90471 0.90879 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.94 9.29 127.69 1.19 3.13 16 2 N -0.49 -23.78 4.79 -693.59 -3.32 -27.10 16 3 C 0.09 3.87 5.54 38.21 0.21 4.08 16 4 C -0.12 -4.59 10.06 22.46 0.23 -4.37 16 5 C -0.12 -3.85 9.96 22.31 0.22 -3.63 16 6 C 0.07 2.27 6.71 22.50 0.15 2.42 16 7 O -0.50 -12.54 13.51 -93.55 -1.26 -13.81 16 8 C -0.12 -4.18 9.97 22.31 0.22 -3.96 16 9 C -0.14 -5.63 6.22 -19.49 -0.12 -5.75 16 10 C -0.10 -4.21 6.49 30.67 0.20 -4.01 16 11 C 0.21 10.69 2.43 44.52 0.11 10.79 16 12 H 0.03 1.54 7.77 -2.39 -0.02 1.52 16 13 C -0.53 -29.52 8.70 25.60 0.22 -29.29 16 14 H 0.05 2.78 7.62 -2.91 -0.02 2.76 16 15 C 0.04 1.96 5.44 84.65 0.46 2.42 16 16 N -0.89 -51.47 13.12 21.45 0.28 -51.19 16 17 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 23 H 0.06 2.54 8.11 -2.39 -0.02 2.52 16 24 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 25 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 26 H 0.40 6.07 9.06 -74.06 -0.67 5.40 16 27 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 28 H 0.08 3.18 7.78 -2.39 -0.02 3.16 16 29 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -64.04 260.36 1.28 -62.75 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.47 Total: 11.67 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.09 Total: -28.15 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -3.04 Total: -78.28 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -1.26 Total: -13.81 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.04 1.28 -62.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.080 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds