Wall clock time and date at job start Mon Mar 30 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.40040 * 110.99945 * 2 1 4 4 C 1.39468 * 129.91804 * 319.77559 * 3 2 1 5 5 C 1.37931 * 120.31693 * 180.71320 * 4 3 2 6 6 C 1.38217 * 120.32600 * 359.97438 * 5 4 3 7 7 C 1.38812 * 119.81699 * 359.87989 * 6 5 4 8 8 O 1.35901 * 120.01860 * 180.02562 * 7 6 5 9 9 C 1.38404 * 119.97029 * 359.97438 * 7 6 5 10 10 C 1.51560 * 131.56826 * 180.29526 * 9 7 6 11 11 C 1.47914 * 110.99656 * 119.96958 * 2 1 3 12 12 H 1.09004 * 110.94155 * 92.55819 * 11 2 1 13 13 C 1.50706 * 110.77957 * 329.19544 * 11 2 1 14 14 H 1.07996 * 119.99722 * 311.75923 * 13 11 2 15 15 C 1.37876 * 119.99584 * 131.76487 * 13 11 2 16 16 N 1.31523 * 119.99787 * 186.92326 * 15 13 11 17 17 Si 1.86796 * 120.00259 * 6.92463 * 15 13 11 18 18 H 1.48501 * 109.47150 * 273.97064 * 17 15 13 19 19 H 1.48497 * 109.47418 * 33.97318 * 17 15 13 20 20 H 1.48500 * 109.47149 * 153.97688 * 17 15 13 21 21 H 1.09000 * 109.47023 * 306.63470 * 1 2 3 22 22 H 1.09002 * 109.46724 * 66.62545 * 1 2 3 23 23 H 1.08991 * 109.47139 * 186.62772 * 1 2 3 24 24 H 1.08004 * 119.83736 * 0.73369 * 4 3 2 25 25 H 1.08000 * 119.83948 * 179.97438 * 5 4 3 26 26 H 1.07995 * 120.09370 * 179.89305 * 6 5 4 27 27 H 0.96697 * 113.99976 * 269.97665 * 8 7 6 28 28 H 1.09004 * 110.74305 * 45.67622 * 10 9 7 29 29 H 1.09004 * 110.73855 * 282.34995 * 10 9 7 30 30 H 0.96994 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9709 1.3074 0.0000 4 6 1.5292 2.4356 -0.6908 5 6 2.1894 3.6388 -0.5536 6 6 3.2948 3.7384 0.2702 7 6 3.7409 2.6222 0.9645 8 8 4.8270 2.7156 1.7760 9 6 3.0783 1.4144 0.8309 10 6 3.3271 0.0564 1.4562 11 6 1.9991 -0.6898 1.1963 12 1 2.1811 -1.7444 0.9892 13 6 1.0607 -0.5307 2.3648 14 1 0.6723 0.4451 2.6164 15 6 0.6985 -1.6309 3.1127 16 7 -0.2228 -1.5181 4.0445 17 14 1.5162 -3.2815 2.8026 18 1 0.8000 -3.9917 1.7126 19 1 2.9313 -3.0664 2.4072 20 1 1.4671 -4.0987 4.0415 21 1 -0.3633 0.6132 0.8247 22 1 -0.3633 0.4077 -0.9434 23 1 -0.3633 -1.0207 0.1186 24 1 0.6657 2.3668 -1.3360 25 1 1.8409 4.5075 -1.0924 26 1 3.8099 4.6819 0.3735 27 1 5.6662 2.5302 1.3328 28 1 3.5147 0.1523 2.5257 29 1 4.1561 -0.4501 0.9618 30 1 -0.4774 -2.2920 4.5709 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261010687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:50 Heat of formation + Delta-G solvation = -4.628458 kcal Electronic energy + Delta-G solvation = -14841.476377 eV Core-core repulsion = 12408.952379 eV Total energy + Delta-G solvation = -2432.523998 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13482 -37.52671 -35.37563 -32.58368 -31.56020 -29.15430 -28.12371 -25.24975 -24.68832 -21.48529 -20.82499 -19.87597 -17.70615 -17.05382 -15.77454 -15.36072 -14.94644 -14.52428 -13.95337 -13.66401 -13.20951 -12.80156 -12.45386 -12.00933 -11.75097 -11.53656 -11.33454 -11.00984 -10.83768 -10.60649 -10.30190 -10.10908 -9.95967 -9.75895 -8.89754 -8.74606 -8.03754 -6.93596 -6.28968 -4.31413 1.78511 1.92359 3.17060 3.26333 3.27713 4.09139 4.24055 4.58266 4.76285 5.16563 5.32708 5.44609 5.68473 5.76983 5.99041 6.14871 6.20196 6.31369 6.35360 6.50413 6.67035 6.83554 6.87158 6.89389 6.93497 7.05963 7.21612 7.38017 7.83754 8.04332 8.11357 8.28548 8.76832 9.32107 10.82786 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.010330 C = 0.009153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.927472 B = 2709.982755 C = 3058.280160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.487 5.487 3 C 0.137 3.863 4 C -0.162 4.162 5 C -0.088 4.088 6 C -0.189 4.189 7 C 0.132 3.868 8 O -0.499 6.499 9 C -0.153 4.153 10 C -0.079 4.079 11 C 0.171 3.829 12 H 0.064 0.936 13 C -0.532 4.532 14 H 0.077 0.923 15 C 0.081 3.919 16 N -0.883 5.883 17 Si 0.878 3.122 18 H -0.272 1.272 19 H -0.264 1.264 20 H -0.285 1.285 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.381 0.619 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 5.057 -8.182 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.200 5.200 3 C 0.036 3.964 4 C -0.183 4.183 5 C -0.106 4.106 6 C -0.209 4.209 7 C 0.088 3.912 8 O -0.308 6.308 9 C -0.157 4.157 10 C -0.118 4.118 11 C 0.067 3.933 12 H 0.082 0.918 13 C -0.570 4.570 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.518 5.518 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.189 1.189 20 H -0.211 1.211 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.236 0.764 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.502 4.699 -8.039 10.816 hybrid contribution 0.477 -0.632 0.245 0.829 sum 5.979 4.067 -7.793 10.632 Atomic orbital electron populations 1.22101 0.85918 1.02839 0.99287 1.61073 1.09648 1.09372 1.39911 1.19720 0.94237 0.89542 0.92934 1.20417 1.02294 0.91426 1.04188 1.20554 0.95172 0.96732 0.98190 1.21020 1.00802 0.98134 1.00937 1.17815 0.89765 0.91391 0.92272 1.84807 1.15788 1.92644 1.37563 1.20927 0.99475 0.95446 0.99850 1.21575 0.98814 0.90706 1.00658 1.20810 0.91468 0.94378 0.86614 0.91841 1.21147 1.27440 0.96608 1.11838 0.90467 1.25064 0.93786 0.98903 0.94638 1.69916 1.28589 1.31244 1.22062 0.86838 0.80891 0.83781 0.78041 1.19796 1.18851 1.21108 0.92976 0.93725 0.91264 0.86594 0.86208 0.86237 0.76446 0.89998 0.92290 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 8.20 60.07 0.49 1.42 16 2 N -0.49 -10.68 5.30 -170.68 -0.90 -11.58 16 3 C 0.14 2.84 5.87 -83.42 -0.49 2.35 16 4 C -0.16 -2.88 9.54 -39.24 -0.37 -3.25 16 5 C -0.09 -1.38 10.01 -39.70 -0.40 -1.77 16 6 C -0.19 -3.08 10.00 -39.38 -0.39 -3.48 16 7 C 0.13 2.45 6.69 -39.31 -0.26 2.18 16 8 O -0.50 -8.28 13.48 -19.43 -0.26 -8.54 16 9 C -0.15 -3.20 6.17 -103.91 -0.64 -3.84 16 10 C -0.08 -1.73 6.53 -26.65 -0.17 -1.90 16 11 C 0.17 4.05 3.09 -67.49 -0.21 3.84 16 12 H 0.06 1.50 5.11 -51.93 -0.27 1.23 16 13 C -0.53 -14.41 6.97 -34.44 -0.24 -14.65 16 14 H 0.08 2.36 7.54 -52.49 -0.40 1.96 16 15 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 16 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 17 Si 0.88 20.54 26.90 -169.99 -4.57 15.96 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 H -0.26 -5.93 6.90 56.52 0.39 -5.54 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H 0.05 1.19 6.80 -51.93 -0.35 0.83 16 22 H 0.04 0.78 7.63 -51.93 -0.40 0.38 16 23 H 0.07 1.46 8.07 -51.93 -0.42 1.04 16 24 H 0.12 1.83 7.56 -52.48 -0.40 1.43 16 25 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 26 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.38 4.23 9.06 45.56 0.41 4.65 16 28 H 0.08 1.87 7.91 -51.93 -0.41 1.46 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 251.57 15.07 3.79 3.79 Total: -1.00 -30.39 251.57 -6.60 -36.99 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -2.64 Total: 5.34 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.79 Total: -16.96 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.13 Total: -36.59 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.26 Total: -8.54 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.57 Total: 15.96 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.39 -6.60 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.363 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds