Wall clock time and date at job start Mon Mar 30 2020 02:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.40040 * 110.99945 * 2 1 4 4 C 1.39468 * 129.91804 * 319.77559 * 3 2 1 5 5 C 1.37931 * 120.31693 * 180.71320 * 4 3 2 6 6 C 1.38217 * 120.32600 * 359.97438 * 5 4 3 7 7 C 1.38812 * 119.81699 * 359.87989 * 6 5 4 8 8 O 1.35901 * 120.01860 * 180.02562 * 7 6 5 9 9 C 1.38404 * 119.97029 * 359.97438 * 7 6 5 10 10 C 1.51560 * 131.56826 * 180.29526 * 9 7 6 11 11 C 1.47914 * 110.99656 * 119.96958 * 2 1 3 12 12 H 1.09004 * 110.94155 * 92.55819 * 11 2 1 13 13 C 1.50706 * 110.77957 * 329.19544 * 11 2 1 14 14 H 1.07996 * 119.99722 * 311.75923 * 13 11 2 15 15 C 1.37876 * 119.99584 * 131.76487 * 13 11 2 16 16 N 1.31523 * 119.99787 * 186.92326 * 15 13 11 17 17 Si 1.86796 * 120.00259 * 6.92463 * 15 13 11 18 18 H 1.48501 * 109.47150 * 273.97064 * 17 15 13 19 19 H 1.48497 * 109.47418 * 33.97318 * 17 15 13 20 20 H 1.48500 * 109.47149 * 153.97688 * 17 15 13 21 21 H 1.09000 * 109.47023 * 306.63470 * 1 2 3 22 22 H 1.09002 * 109.46724 * 66.62545 * 1 2 3 23 23 H 1.08991 * 109.47139 * 186.62772 * 1 2 3 24 24 H 1.08004 * 119.83736 * 0.73369 * 4 3 2 25 25 H 1.08000 * 119.83948 * 179.97438 * 5 4 3 26 26 H 1.07995 * 120.09370 * 179.89305 * 6 5 4 27 27 H 0.96697 * 113.99976 * 269.97665 * 8 7 6 28 28 H 1.09004 * 110.74305 * 45.67622 * 10 9 7 29 29 H 1.09004 * 110.73855 * 282.34995 * 10 9 7 30 30 H 0.96994 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9709 1.3074 0.0000 4 6 1.5292 2.4356 -0.6908 5 6 2.1894 3.6388 -0.5536 6 6 3.2948 3.7384 0.2702 7 6 3.7409 2.6222 0.9645 8 8 4.8270 2.7156 1.7760 9 6 3.0783 1.4144 0.8309 10 6 3.3271 0.0564 1.4562 11 6 1.9991 -0.6898 1.1963 12 1 2.1811 -1.7444 0.9892 13 6 1.0607 -0.5307 2.3648 14 1 0.6723 0.4451 2.6164 15 6 0.6985 -1.6309 3.1127 16 7 -0.2228 -1.5181 4.0445 17 14 1.5162 -3.2815 2.8026 18 1 0.8000 -3.9917 1.7126 19 1 2.9313 -3.0664 2.4072 20 1 1.4671 -4.0987 4.0415 21 1 -0.3633 0.6132 0.8247 22 1 -0.3633 0.4077 -0.9434 23 1 -0.3633 -1.0207 0.1186 24 1 0.6657 2.3668 -1.3360 25 1 1.8409 4.5075 -1.0924 26 1 3.8099 4.6819 0.3735 27 1 5.6662 2.5302 1.3328 28 1 3.5147 0.1523 2.5257 29 1 4.1561 -0.4501 0.9618 30 1 -0.4774 -2.2920 4.5709 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:49 Heat of formation + Delta-G solvation = -27.395944 kcal Electronic energy + Delta-G solvation = -14842.463649 eV Core-core repulsion = 12408.952379 eV Total energy + Delta-G solvation = -2433.511270 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.65623 -38.96923 -36.79405 -34.62642 -33.16952 -30.78608 -29.62095 -27.06284 -26.36564 -23.05150 -22.27031 -21.55738 -19.52235 -18.68500 -17.36839 -16.82350 -16.35577 -16.25708 -15.54108 -15.33817 -14.88737 -14.44511 -14.20864 -13.65910 -13.29390 -13.09627 -12.93733 -12.76412 -12.43292 -12.15546 -12.02503 -11.89655 -11.75515 -11.42282 -10.82659 -10.52270 -9.42962 -8.54931 -8.40593 -6.47798 0.40985 0.51138 1.31912 1.34057 1.44884 2.26605 2.65097 2.92312 3.29400 3.42785 3.81762 4.08891 4.20323 4.37073 4.48208 4.53785 4.71846 4.74791 4.79892 4.90443 4.96699 5.13138 5.18879 5.37381 5.48776 5.54958 5.62735 5.85735 6.12141 6.15672 6.45543 6.59136 6.93733 7.18952 8.75351 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.010330 C = 0.009153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.927472 B = 2709.982755 C = 3058.280160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.488 5.488 3 C 0.104 3.896 4 C -0.165 4.165 5 C -0.077 4.077 6 C -0.182 4.182 7 C 0.126 3.874 8 O -0.509 6.509 9 C -0.186 4.186 10 C -0.075 4.075 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.528 4.528 14 H 0.025 0.975 15 C 0.026 3.974 16 N -0.933 5.933 17 Si 0.943 3.057 18 H -0.260 1.260 19 H -0.247 1.247 20 H -0.282 1.282 21 H 0.018 0.982 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.135 0.865 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.405 0.595 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 5.937 -10.169 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.201 5.201 3 C 0.004 3.996 4 C -0.186 4.186 5 C -0.095 4.095 6 C -0.201 4.201 7 C 0.081 3.919 8 O -0.321 6.321 9 C -0.190 4.190 10 C -0.113 4.113 11 C 0.063 3.937 12 H 0.085 0.915 13 C -0.566 4.566 14 H 0.043 0.957 15 C -0.175 4.175 16 N -0.571 5.571 17 Si 0.766 3.234 18 H -0.185 1.185 19 H -0.171 1.171 20 H -0.208 1.208 21 H 0.037 0.963 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.153 0.847 25 H 0.182 0.818 26 H 0.170 0.830 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.922 5.608 -10.055 13.434 hybrid contribution 0.068 -0.677 0.848 1.087 sum 6.990 4.931 -9.206 12.567 Atomic orbital electron populations 1.22038 0.85865 1.01717 0.99789 1.61060 1.09713 1.10655 1.38718 1.19996 0.94961 0.89935 0.94725 1.20781 1.02925 0.91151 1.03772 1.21073 0.93989 0.97189 0.97247 1.21447 1.00637 0.98488 0.99516 1.18034 0.90273 0.91218 0.92350 1.84743 1.16691 1.92563 1.38152 1.21071 1.00777 0.95940 1.01198 1.21400 0.98354 0.91984 0.99608 1.20738 0.91719 0.95202 0.86051 0.91511 1.21136 1.27809 0.94360 1.13288 0.95664 1.25929 0.94252 1.03025 0.94264 1.70055 1.30672 1.32608 1.23768 0.85788 0.80659 0.78666 0.78253 1.18523 1.17060 1.20821 0.96337 0.90104 0.92329 0.84693 0.81845 0.83007 0.73666 0.92279 0.90146 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.19 8.20 127.69 1.05 3.24 16 2 N -0.49 -21.35 5.30 -693.92 -3.67 -25.02 16 3 C 0.10 4.23 5.87 38.28 0.22 4.45 16 4 C -0.17 -5.46 9.54 22.49 0.21 -5.24 16 5 C -0.08 -2.09 10.01 22.19 0.22 -1.87 16 6 C -0.18 -5.24 10.00 22.40 0.22 -5.01 16 7 C 0.13 4.42 6.69 22.45 0.15 4.57 16 8 O -0.51 -15.89 13.48 -92.43 -1.25 -17.14 16 9 C -0.19 -7.69 6.17 -19.40 -0.12 -7.81 16 10 C -0.08 -3.29 6.53 30.65 0.20 -3.09 16 11 C 0.17 8.04 3.09 44.50 0.14 8.18 16 12 H 0.07 3.11 5.11 -2.39 -0.01 3.10 16 13 C -0.53 -29.85 6.97 25.60 0.18 -29.67 16 14 H 0.03 1.65 7.54 -2.91 -0.02 1.62 16 15 C 0.03 1.46 5.47 84.65 0.46 1.92 16 16 N -0.93 -56.83 13.96 21.45 0.30 -56.54 16 17 Si 0.94 42.71 26.90 68.60 1.85 44.56 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 19 H -0.25 -10.42 6.90 99.48 0.69 -9.73 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H 0.02 0.86 6.80 -2.39 -0.02 0.85 16 22 H 0.08 2.73 7.63 -2.39 -0.02 2.71 16 23 H 0.06 2.52 8.07 -2.39 -0.02 2.50 16 24 H 0.14 3.84 7.56 -2.91 -0.02 3.82 16 25 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 26 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.41 8.02 9.06 -74.06 -0.67 7.35 16 28 H 0.06 2.78 7.91 -2.38 -0.02 2.76 16 29 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.52 251.57 0.63 -67.89 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.46 Total: 16.58 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.94 Total: -30.33 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -3.38 Total: -81.56 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.25 Total: -17.14 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.85 Total: 44.56 kcal Total: -68.52 0.63 -67.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.496 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds