Wall clock time and date at job start Mon Mar 30 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46872 * 299.99820 * 3 2 1 6 6 H 1.48497 * 109.46897 * 59.99877 * 3 2 1 7 7 C 1.40101 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.41541 * 120.00277 * 0.02562 * 7 2 1 10 10 N 1.33900 * 120.52588 * 0.25975 * 9 7 2 11 11 C 1.32086 * 120.30441 * 180.46988 * 10 9 7 12 12 N 1.38386 * 119.11238 * 179.82692 * 11 10 9 13 13 N 1.32556 * 121.77767 * 359.55315 * 11 10 9 14 14 C 1.32933 * 121.50470 * 0.09599 * 13 11 10 15 15 C 1.37569 * 119.04646 * 359.94808 * 14 13 11 16 16 C 1.50326 * 122.86808 * 180.45737 * 15 14 13 17 17 C 1.52826 * 110.46130 * 342.42500 * 16 15 14 18 18 C 1.53316 * 108.45184 * 50.79242 * 17 16 15 19 19 C 1.50484 * 118.41655 * 179.72424 * 14 13 11 20 20 H 0.97000 * 120.00489 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00406 * 179.73472 * 12 11 10 22 22 H 0.97005 * 119.99870 * 359.45434 * 12 11 10 23 23 H 1.09008 * 109.30421 * 222.12325 * 16 15 14 24 24 H 1.09001 * 109.14624 * 102.62678 * 16 15 14 25 25 H 1.08994 * 109.64525 * 291.10623 * 17 16 15 26 26 H 1.08998 * 109.64376 * 170.47662 * 17 16 15 27 27 H 1.09006 * 109.62858 * 170.56533 * 18 17 16 28 28 H 1.08999 * 109.63343 * 49.98321 * 18 17 16 29 29 H 1.09007 * 109.30317 * 282.75216 * 19 14 13 30 30 H 1.08998 * 109.30807 * 42.34016 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8819 2.3964 1.2125 7 6 2.0072 -1.2133 0.0005 8 1 3.0873 -1.2134 0.0010 9 6 1.2996 -2.4391 0.0005 10 7 -0.0393 -2.4515 -0.0052 11 6 -0.6953 -3.5979 0.0042 12 7 -2.0790 -3.5819 0.0016 13 7 -0.0639 -4.7634 0.0106 14 6 1.2635 -4.8344 0.0098 15 6 1.9947 -3.6691 0.0011 16 6 3.4978 -3.6492 -0.0106 17 6 4.0534 -5.0058 0.4211 18 6 3.3697 -6.0972 -0.4107 19 6 1.9080 -6.1942 0.0238 20 1 -0.4851 0.8400 -0.0004 21 1 -2.5738 -4.4162 0.0045 22 1 -2.5543 -2.7363 0.0010 23 1 3.8533 -2.8796 0.6747 24 1 3.8445 -3.4221 -1.0187 25 1 3.8455 -5.1672 1.4788 26 1 5.1292 -5.0332 0.2478 27 1 3.8664 -7.0525 -0.2405 28 1 3.4210 -5.8379 -1.4681 29 1 1.8583 -6.6062 1.0318 30 1 1.3745 -6.8529 -0.6613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:31 Heat of formation + Delta-G solvation = 25.120520 kcal Electronic energy + Delta-G solvation = -14753.753086 eV Core-core repulsion = 12354.811852 eV Total energy + Delta-G solvation = -2398.941234 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.26238 -36.13663 -34.28709 -32.53898 -31.70243 -29.48299 -28.12155 -26.22462 -22.93502 -22.01474 -20.89695 -19.00566 -17.62474 -16.37465 -15.51071 -14.93832 -14.30830 -14.23268 -13.48195 -13.17786 -13.04025 -12.76172 -12.33474 -12.02564 -11.39937 -11.34740 -11.17554 -10.65059 -10.45562 -10.32042 -10.31010 -9.81970 -9.68118 -8.99517 -8.83570 -8.34943 -7.25053 -6.70286 -6.35456 -4.69010 2.85055 3.01080 3.07317 3.11504 3.33887 3.91673 4.64258 4.84359 5.42324 5.49954 5.53279 5.84203 5.90606 6.15253 6.22538 6.33423 6.42623 6.51015 6.60240 6.65681 6.75889 6.91480 6.97421 7.02961 7.14962 7.63780 7.76608 8.07956 8.37618 8.55010 8.75506 8.96444 9.31708 10.23063 10.45297 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.011829 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.794250 B = 2366.529109 C = 3348.840510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.423 4.423 8 H 0.091 0.909 9 C 0.304 3.696 10 N -0.564 5.564 11 C 0.551 3.449 12 N -0.846 5.846 13 N -0.668 5.668 14 C 0.192 3.808 15 C -0.313 4.313 16 C -0.037 4.037 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.058 4.058 20 H 0.272 0.728 21 H 0.393 0.607 22 H 0.402 0.598 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -3.802 0.043 5.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.156 4.156 3 Si 0.730 3.270 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.109 0.891 9 C 0.171 3.829 10 N -0.292 5.292 11 C 0.190 3.810 12 N -0.396 5.396 13 N -0.399 5.399 14 C 0.055 3.945 15 C -0.323 4.323 16 C -0.076 4.076 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.096 4.096 20 H 0.083 0.917 21 H 0.221 0.779 22 H 0.231 0.769 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.284 -3.668 0.035 4.321 hybrid contribution 0.673 0.799 0.007 1.045 sum 2.957 -2.870 0.042 4.121 Atomic orbital electron populations 1.70119 1.07306 1.27607 1.27976 1.26119 0.94876 1.01157 0.93438 0.86292 0.80976 0.81160 0.78554 1.18235 1.19830 1.19832 1.19706 0.94447 0.88928 1.42617 0.89142 1.18490 0.87042 0.91526 0.85794 1.68950 1.08589 1.23995 1.27673 1.19438 0.86592 0.86130 0.88808 1.41433 1.02168 1.10048 1.85914 1.67427 1.10010 1.28654 1.33830 1.20079 0.88525 0.93334 0.92611 1.20436 0.95676 0.94531 1.21667 1.19809 0.92481 0.95370 0.99900 1.21571 0.98311 0.96116 0.99517 1.21503 0.95207 0.98193 1.00169 1.20136 0.94415 0.93884 1.01180 0.91726 0.77936 0.76910 0.92098 0.93232 0.92438 0.92796 0.92476 0.92055 0.91476 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.66 11.51 55.55 0.64 -18.02 16 2 C 0.07 1.78 5.50 -17.35 -0.10 1.68 16 3 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.42 -11.17 8.66 -37.63 -0.33 -11.50 16 8 H 0.09 2.22 6.24 -52.48 -0.33 1.89 16 9 C 0.30 8.43 6.58 -84.55 -0.56 7.87 16 10 N -0.56 -15.92 8.06 -11.85 -0.10 -16.02 16 11 C 0.55 14.32 8.66 -323.28 -2.80 11.52 16 12 N -0.85 -17.75 9.07 29.70 0.27 -17.48 16 13 N -0.67 -16.92 10.32 -10.42 -0.11 -17.03 16 14 C 0.19 4.59 6.63 -82.46 -0.55 4.05 16 15 C -0.31 -7.75 5.80 -103.89 -0.60 -8.35 16 16 C -0.04 -0.76 4.87 -28.15 -0.14 -0.90 16 17 C -0.12 -1.96 5.98 -26.66 -0.16 -2.12 16 18 C -0.11 -1.81 5.97 -26.67 -0.16 -1.97 16 19 C -0.06 -1.09 5.95 -28.09 -0.17 -1.25 16 20 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 21 H 0.39 7.07 8.94 -40.82 -0.37 6.71 16 22 H 0.40 7.94 8.94 -40.82 -0.36 7.57 16 23 H 0.06 1.25 6.91 -51.92 -0.36 0.89 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -30.55 250.68 -9.60 -40.14 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -3.51 Total: 12.29 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -5.55 Total: -0.97 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: 0.71 Total: -68.55 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.55 -9.60 -40.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.265 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds