Wall clock time and date at job start Mon Mar 30 2020 02:47:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30672 * 1
3 3 Si 1.86801 * 120.00044 * 2 1
4 4 H 1.48500 * 109.47139 * 180.02562 * 3 2 1
5 5 H 1.48509 * 109.46872 * 299.99820 * 3 2 1
6 6 H 1.48497 * 109.46897 * 59.99877 * 3 2 1
7 7 C 1.40101 * 120.00098 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00409 * 180.02562 * 7 2 1
9 9 C 1.41541 * 120.00277 * 0.02562 * 7 2 1
10 10 N 1.33900 * 120.52588 * 0.25975 * 9 7 2
11 11 C 1.32086 * 120.30441 * 180.46988 * 10 9 7
12 12 N 1.38386 * 119.11238 * 179.82692 * 11 10 9
13 13 N 1.32556 * 121.77767 * 359.55315 * 11 10 9
14 14 C 1.32933 * 121.50470 * 0.09599 * 13 11 10
15 15 C 1.37569 * 119.04646 * 359.94808 * 14 13 11
16 16 C 1.50326 * 122.86808 * 180.45737 * 15 14 13
17 17 C 1.52826 * 110.46130 * 342.42500 * 16 15 14
18 18 C 1.53316 * 108.45184 * 50.79242 * 17 16 15
19 19 C 1.50484 * 118.41655 * 179.72424 * 14 13 11
20 20 H 0.97000 * 120.00489 * 0.02562 * 1 2 3
21 21 H 0.97001 * 120.00406 * 179.73472 * 12 11 10
22 22 H 0.97005 * 119.99870 * 359.45434 * 12 11 10
23 23 H 1.09008 * 109.30421 * 222.12325 * 16 15 14
24 24 H 1.09001 * 109.14624 * 102.62678 * 16 15 14
25 25 H 1.08994 * 109.64525 * 291.10623 * 17 16 15
26 26 H 1.08998 * 109.64376 * 170.47662 * 17 16 15
27 27 H 1.09006 * 109.62858 * 170.56533 * 18 17 16
28 28 H 1.08999 * 109.63343 * 49.98321 * 18 17 16
29 29 H 1.09007 * 109.30317 * 282.75216 * 19 14 13
30 30 H 1.08998 * 109.30807 * 42.34016 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 3.7007 1.3464 -0.0006
5 1 1.8820 2.3964 -1.2126
6 1 1.8819 2.3964 1.2125
7 6 2.0072 -1.2133 0.0005
8 1 3.0873 -1.2134 0.0010
9 6 1.2996 -2.4391 0.0005
10 7 -0.0393 -2.4515 -0.0052
11 6 -0.6953 -3.5979 0.0042
12 7 -2.0790 -3.5819 0.0016
13 7 -0.0639 -4.7634 0.0106
14 6 1.2635 -4.8344 0.0098
15 6 1.9947 -3.6691 0.0011
16 6 3.4978 -3.6492 -0.0106
17 6 4.0534 -5.0058 0.4211
18 6 3.3697 -6.0972 -0.4107
19 6 1.9080 -6.1942 0.0238
20 1 -0.4851 0.8400 -0.0004
21 1 -2.5738 -4.4162 0.0045
22 1 -2.5543 -2.7363 0.0010
23 1 3.8533 -2.8796 0.6747
24 1 3.8445 -3.4221 -1.0187
25 1 3.8455 -5.1672 1.4788
26 1 5.1292 -5.0332 0.2478
27 1 3.8664 -7.0525 -0.2405
28 1 3.4210 -5.8379 -1.4681
29 1 1.8583 -6.6062 1.0318
30 1 1.3745 -6.8529 -0.6613
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261083262.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:47:31
Heat of formation + Delta-G solvation = 25.120520 kcal
Electronic energy + Delta-G solvation = -14753.753086 eV
Core-core repulsion = 12354.811852 eV
Total energy + Delta-G solvation = -2398.941234 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.107 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.26238 -36.13663 -34.28709 -32.53898 -31.70243 -29.48299 -28.12155 -26.22462
-22.93502 -22.01474 -20.89695 -19.00566 -17.62474 -16.37465 -15.51071 -14.93832
-14.30830 -14.23268 -13.48195 -13.17786 -13.04025 -12.76172 -12.33474 -12.02564
-11.39937 -11.34740 -11.17554 -10.65059 -10.45562 -10.32042 -10.31010 -9.81970
-9.68118 -8.99517 -8.83570 -8.34943 -7.25053 -6.70286 -6.35456 -4.69010
2.85055 3.01080 3.07317 3.11504 3.33887 3.91673 4.64258 4.84359
5.42324 5.49954 5.53279 5.84203 5.90606 6.15253 6.22538 6.33423
6.42623 6.51015 6.60240 6.65681 6.75889 6.91480 6.97421 7.02961
7.14962 7.63780 7.76608 8.07956 8.37618 8.55010 8.75506 8.96444
9.31708 10.23063 10.45297
Molecular weight = 219.11amu
Principal moments of inertia in cm(-1)
A = 0.027157 B = 0.011829 C = 0.008359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1030.794250 B = 2366.529109 C = 3348.840510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.708 5.708
2 C 0.071 3.929
3 Si 0.906 3.094
4 H -0.259 1.259
5 H -0.273 1.273
6 H -0.273 1.273
7 C -0.423 4.423
8 H 0.091 0.909
9 C 0.304 3.696
10 N -0.564 5.564
11 C 0.551 3.449
12 N -0.846 5.846
13 N -0.668 5.668
14 C 0.192 3.808
15 C -0.313 4.313
16 C -0.037 4.037
17 C -0.118 4.118
18 C -0.113 4.113
19 C -0.058 4.058
20 H 0.272 0.728
21 H 0.393 0.607
22 H 0.402 0.598
23 H 0.061 0.939
24 H 0.049 0.951
25 H 0.057 0.943
26 H 0.053 0.947
27 H 0.057 0.943
28 H 0.061 0.939
29 H 0.067 0.933
30 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.381 -3.802 0.043 5.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.330 5.330
2 C -0.156 4.156
3 Si 0.730 3.270
4 H -0.182 1.182
5 H -0.198 1.198
6 H -0.198 1.198
7 C -0.457 4.457
8 H 0.109 0.891
9 C 0.171 3.829
10 N -0.292 5.292
11 C 0.190 3.810
12 N -0.396 5.396
13 N -0.399 5.399
14 C 0.055 3.945
15 C -0.323 4.323
16 C -0.076 4.076
17 C -0.155 4.155
18 C -0.151 4.151
19 C -0.096 4.096
20 H 0.083 0.917
21 H 0.221 0.779
22 H 0.231 0.769
23 H 0.079 0.921
24 H 0.068 0.932
25 H 0.076 0.924
26 H 0.072 0.928
27 H 0.075 0.925
28 H 0.079 0.921
29 H 0.085 0.915
30 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 2.284 -3.668 0.035 4.321
hybrid contribution 0.673 0.799 0.007 1.045
sum 2.957 -2.870 0.042 4.121
Atomic orbital electron populations
1.70119 1.07306 1.27607 1.27976 1.26119 0.94876 1.01157 0.93438
0.86292 0.80976 0.81160 0.78554 1.18235 1.19830 1.19832 1.19706
0.94447 0.88928 1.42617 0.89142 1.18490 0.87042 0.91526 0.85794
1.68950 1.08589 1.23995 1.27673 1.19438 0.86592 0.86130 0.88808
1.41433 1.02168 1.10048 1.85914 1.67427 1.10010 1.28654 1.33830
1.20079 0.88525 0.93334 0.92611 1.20436 0.95676 0.94531 1.21667
1.19809 0.92481 0.95370 0.99900 1.21571 0.98311 0.96116 0.99517
1.21503 0.95207 0.98193 1.00169 1.20136 0.94415 0.93884 1.01180
0.91726 0.77936 0.76910 0.92098 0.93232 0.92438 0.92796 0.92476
0.92055 0.91476 0.91408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.71 -18.66 11.51 55.55 0.64 -18.02 16
2 C 0.07 1.78 5.50 -17.35 -0.10 1.68 16
3 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 16
4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16
5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
7 C -0.42 -11.17 8.66 -37.63 -0.33 -11.50 16
8 H 0.09 2.22 6.24 -52.48 -0.33 1.89 16
9 C 0.30 8.43 6.58 -84.55 -0.56 7.87 16
10 N -0.56 -15.92 8.06 -11.85 -0.10 -16.02 16
11 C 0.55 14.32 8.66 -323.28 -2.80 11.52 16
12 N -0.85 -17.75 9.07 29.70 0.27 -17.48 16
13 N -0.67 -16.92 10.32 -10.42 -0.11 -17.03 16
14 C 0.19 4.59 6.63 -82.46 -0.55 4.05 16
15 C -0.31 -7.75 5.80 -103.89 -0.60 -8.35 16
16 C -0.04 -0.76 4.87 -28.15 -0.14 -0.90 16
17 C -0.12 -1.96 5.98 -26.66 -0.16 -2.12 16
18 C -0.11 -1.81 5.97 -26.67 -0.16 -1.97 16
19 C -0.06 -1.09 5.95 -28.09 -0.17 -1.25 16
20 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16
21 H 0.39 7.07 8.94 -40.82 -0.37 6.71 16
22 H 0.40 7.94 8.94 -40.82 -0.36 7.57 16
23 H 0.06 1.25 6.91 -51.92 -0.36 0.89 16
24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16
26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
28 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16
29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
LS Contribution 250.68 15.07 3.78 3.78
Total: -1.00 -30.55 250.68 -9.60 -40.14
By element:
Atomic # 1 Polarization: 15.79 SS G_CDS: -3.51 Total: 12.29 kcal
Atomic # 6 Polarization: 4.58 SS G_CDS: -5.55 Total: -0.97 kcal
Atomic # 7 Polarization: -69.25 SS G_CDS: 0.71 Total: -68.55 kcal
Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal
Total LS contribution 3.78 Total: 3.78 kcal
Total: -30.55 -9.60 -40.14 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261083262.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.265 kcal
(2) G-P(sol) polarization free energy of solvation -30.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.718 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds