Wall clock time and date at job start Mon Mar 30 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46872 * 299.99820 * 3 2 1 6 6 H 1.48497 * 109.46897 * 59.99877 * 3 2 1 7 7 C 1.40101 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.41541 * 120.00277 * 0.02562 * 7 2 1 10 10 N 1.33900 * 120.52588 * 0.25975 * 9 7 2 11 11 C 1.32086 * 120.30441 * 180.46988 * 10 9 7 12 12 N 1.38386 * 119.11238 * 179.82692 * 11 10 9 13 13 N 1.32556 * 121.77767 * 359.55315 * 11 10 9 14 14 C 1.32933 * 121.50470 * 0.09599 * 13 11 10 15 15 C 1.37569 * 119.04646 * 359.94808 * 14 13 11 16 16 C 1.50326 * 122.86808 * 180.45737 * 15 14 13 17 17 C 1.52826 * 110.46130 * 342.42500 * 16 15 14 18 18 C 1.53316 * 108.45184 * 50.79242 * 17 16 15 19 19 C 1.50484 * 118.41655 * 179.72424 * 14 13 11 20 20 H 0.97000 * 120.00489 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00406 * 179.73472 * 12 11 10 22 22 H 0.97005 * 119.99870 * 359.45434 * 12 11 10 23 23 H 1.09008 * 109.30421 * 222.12325 * 16 15 14 24 24 H 1.09001 * 109.14624 * 102.62678 * 16 15 14 25 25 H 1.08994 * 109.64525 * 291.10623 * 17 16 15 26 26 H 1.08998 * 109.64376 * 170.47662 * 17 16 15 27 27 H 1.09006 * 109.62858 * 170.56533 * 18 17 16 28 28 H 1.08999 * 109.63343 * 49.98321 * 18 17 16 29 29 H 1.09007 * 109.30317 * 282.75216 * 19 14 13 30 30 H 1.08998 * 109.30807 * 42.34016 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8819 2.3964 1.2125 7 6 2.0072 -1.2133 0.0005 8 1 3.0873 -1.2134 0.0010 9 6 1.2996 -2.4391 0.0005 10 7 -0.0393 -2.4515 -0.0052 11 6 -0.6953 -3.5979 0.0042 12 7 -2.0790 -3.5819 0.0016 13 7 -0.0639 -4.7634 0.0106 14 6 1.2635 -4.8344 0.0098 15 6 1.9947 -3.6691 0.0011 16 6 3.4978 -3.6492 -0.0106 17 6 4.0534 -5.0058 0.4211 18 6 3.3697 -6.0972 -0.4107 19 6 1.9080 -6.1942 0.0238 20 1 -0.4851 0.8400 -0.0004 21 1 -2.5738 -4.4162 0.0045 22 1 -2.5543 -2.7363 0.0010 23 1 3.8533 -2.8796 0.6747 24 1 3.8445 -3.4221 -1.0187 25 1 3.8455 -5.1672 1.4788 26 1 5.1292 -5.0332 0.2478 27 1 3.8664 -7.0525 -0.2405 28 1 3.4210 -5.8379 -1.4681 29 1 1.8583 -6.6062 1.0318 30 1 1.3745 -6.8529 -0.6613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:31 Heat of formation + Delta-G solvation = 6.605451 kcal Electronic energy + Delta-G solvation = -14754.555959 eV Core-core repulsion = 12354.811852 eV Total energy + Delta-G solvation = -2399.744108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.08952 -37.73622 -36.17115 -34.27615 -33.54772 -31.19250 -29.81442 -28.11269 -24.59965 -23.67430 -22.71602 -20.58011 -19.52710 -18.12439 -17.38864 -16.62090 -15.98711 -15.85704 -15.22428 -14.87836 -14.57235 -14.45672 -13.97898 -13.60802 -13.01341 -12.94527 -12.87710 -12.52995 -11.91615 -11.90139 -11.78759 -11.44448 -11.30754 -10.74846 -10.63812 -10.30206 -9.18971 -8.55865 -8.25695 -6.67344 1.04848 1.14240 1.41106 1.56848 1.59630 2.21657 2.90072 2.92949 3.90595 3.96976 4.16960 4.17651 4.32673 4.63467 4.75564 4.85672 4.87650 5.02936 5.09044 5.12945 5.21271 5.28658 5.35277 5.40598 5.59487 5.85547 5.99140 6.13638 6.50862 6.71786 7.00051 7.03569 7.39510 8.37677 8.52266 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.011829 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.794250 B = 2366.529109 C = 3348.840510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.249 1.249 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.448 4.448 8 H 0.100 0.900 9 C 0.263 3.737 10 N -0.597 5.597 11 C 0.527 3.473 12 N -0.829 5.829 13 N -0.678 5.678 14 C 0.176 3.824 15 C -0.333 4.333 16 C -0.035 4.035 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.055 4.055 20 H 0.279 0.721 21 H 0.407 0.593 22 H 0.406 0.594 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -4.297 0.075 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.200 4.200 3 Si 0.808 3.192 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.482 4.482 8 H 0.118 0.882 9 C 0.132 3.868 10 N -0.327 5.327 11 C 0.166 3.834 12 N -0.381 5.381 13 N -0.410 5.410 14 C 0.038 3.962 15 C -0.343 4.343 16 C -0.073 4.073 17 C -0.148 4.148 18 C -0.143 4.143 19 C -0.093 4.093 20 H 0.090 0.910 21 H 0.237 0.763 22 H 0.236 0.764 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.944 -4.200 0.066 5.762 hybrid contribution 0.075 0.908 -0.003 0.912 sum 4.019 -3.292 0.063 5.195 Atomic orbital electron populations 1.70214 1.09090 1.29098 1.28438 1.27103 0.95736 1.04763 0.92379 0.85072 0.79703 0.75739 0.78703 1.17213 1.19212 1.19193 1.20097 0.95111 0.89624 1.43352 0.88186 1.19121 0.87615 0.93432 0.86672 1.68912 1.09408 1.25230 1.29144 1.19928 0.88125 0.86240 0.89075 1.41327 1.00651 1.11126 1.84957 1.67586 1.11014 1.28113 1.34275 1.20980 0.88284 0.95636 0.91261 1.20886 0.98017 0.93909 1.21475 1.19820 0.89894 0.97839 0.99767 1.21548 1.00131 0.93726 0.99429 1.21510 0.93311 0.99928 0.99580 1.20260 0.96030 0.90815 1.02221 0.91028 0.76268 0.76362 0.92961 0.93301 0.92533 0.89467 0.88402 0.92507 0.90242 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.20 11.51 21.85 0.25 -39.95 16 2 C 0.02 1.19 5.50 85.32 0.47 1.65 16 3 Si 0.99 37.58 29.56 68.60 2.03 39.60 16 4 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.45 -24.16 8.66 23.54 0.20 -23.96 16 8 H 0.10 4.97 6.24 -2.91 -0.02 4.95 16 9 C 0.26 15.04 6.58 40.39 0.27 15.30 16 10 N -0.60 -34.82 8.06 -191.39 -1.54 -36.36 16 11 C 0.53 28.01 8.66 261.65 2.27 30.27 16 12 N -0.83 -35.24 9.07 -59.96 -0.54 -35.79 16 13 N -0.68 -34.61 10.32 -186.87 -1.93 -36.54 16 14 C 0.18 8.36 6.63 42.17 0.28 8.64 16 15 C -0.33 -16.66 5.80 -19.39 -0.11 -16.77 16 16 C -0.03 -1.40 4.87 29.67 0.14 -1.25 16 17 C -0.11 -3.37 5.98 30.64 0.18 -3.19 16 18 C -0.11 -3.02 5.97 30.63 0.18 -2.83 16 19 C -0.06 -1.96 5.95 29.71 0.18 -1.78 16 20 H 0.28 13.49 8.29 -92.71 -0.77 12.72 16 21 H 0.41 14.62 8.94 -92.71 -0.83 13.79 16 22 H 0.41 16.36 8.94 -92.70 -0.83 15.53 16 23 H 0.05 2.14 6.91 -2.38 -0.02 2.12 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.73 8.10 -2.39 -0.02 1.72 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 29 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -67.64 250.68 1.85 -65.79 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -0.48 Total: 37.15 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 4.06 Total: 6.09 kcal Atomic # 7 Polarization: -144.87 SS G_CDS: -3.76 Total: -148.63 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.60 kcal Total: -67.64 1.85 -65.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.399 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds