Wall clock time and date at job start Mon Mar 30 2020 02:47:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30672 * 1
3 3 Si 1.86801 * 120.00044 * 2 1
4 4 H 1.48500 * 109.47139 * 180.02562 * 3 2 1
5 5 H 1.48509 * 109.46872 * 299.99820 * 3 2 1
6 6 H 1.48497 * 109.46897 * 59.99877 * 3 2 1
7 7 C 1.40101 * 120.00098 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00409 * 180.02562 * 7 2 1
9 9 C 1.41541 * 120.00277 * 0.02562 * 7 2 1
10 10 N 1.33900 * 120.52588 * 0.25975 * 9 7 2
11 11 C 1.32086 * 120.30441 * 180.46988 * 10 9 7
12 12 N 1.38386 * 119.11238 * 179.82692 * 11 10 9
13 13 N 1.32556 * 121.77767 * 359.55315 * 11 10 9
14 14 C 1.32933 * 121.50470 * 0.09599 * 13 11 10
15 15 C 1.37569 * 119.04646 * 359.94808 * 14 13 11
16 16 C 1.50326 * 122.86808 * 180.45737 * 15 14 13
17 17 C 1.52826 * 110.46130 * 342.42500 * 16 15 14
18 18 C 1.53316 * 108.45184 * 50.79242 * 17 16 15
19 19 C 1.50484 * 118.41655 * 179.72424 * 14 13 11
20 20 H 0.97000 * 120.00489 * 0.02562 * 1 2 3
21 21 H 0.97001 * 120.00406 * 179.73472 * 12 11 10
22 22 H 0.97005 * 119.99870 * 359.45434 * 12 11 10
23 23 H 1.09008 * 109.30421 * 222.12325 * 16 15 14
24 24 H 1.09001 * 109.14624 * 102.62678 * 16 15 14
25 25 H 1.08994 * 109.64525 * 291.10623 * 17 16 15
26 26 H 1.08998 * 109.64376 * 170.47662 * 17 16 15
27 27 H 1.09006 * 109.62858 * 170.56533 * 18 17 16
28 28 H 1.08999 * 109.63343 * 49.98321 * 18 17 16
29 29 H 1.09007 * 109.30317 * 282.75216 * 19 14 13
30 30 H 1.08998 * 109.30807 * 42.34016 * 19 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 3.7007 1.3464 -0.0006
5 1 1.8820 2.3964 -1.2126
6 1 1.8819 2.3964 1.2125
7 6 2.0072 -1.2133 0.0005
8 1 3.0873 -1.2134 0.0010
9 6 1.2996 -2.4391 0.0005
10 7 -0.0393 -2.4515 -0.0052
11 6 -0.6953 -3.5979 0.0042
12 7 -2.0790 -3.5819 0.0016
13 7 -0.0639 -4.7634 0.0106
14 6 1.2635 -4.8344 0.0098
15 6 1.9947 -3.6691 0.0011
16 6 3.4978 -3.6492 -0.0106
17 6 4.0534 -5.0058 0.4211
18 6 3.3697 -6.0972 -0.4107
19 6 1.9080 -6.1942 0.0238
20 1 -0.4851 0.8400 -0.0004
21 1 -2.5738 -4.4162 0.0045
22 1 -2.5543 -2.7363 0.0010
23 1 3.8533 -2.8796 0.6747
24 1 3.8445 -3.4221 -1.0187
25 1 3.8455 -5.1672 1.4788
26 1 5.1292 -5.0332 0.2478
27 1 3.8664 -7.0525 -0.2405
28 1 3.4210 -5.8379 -1.4681
29 1 1.8583 -6.6062 1.0318
30 1 1.3745 -6.8529 -0.6613
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261083262.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:47:31
Heat of formation + Delta-G solvation = 6.605451 kcal
Electronic energy + Delta-G solvation = -14754.555959 eV
Core-core repulsion = 12354.811852 eV
Total energy + Delta-G solvation = -2399.744108 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.107 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.08952 -37.73622 -36.17115 -34.27615 -33.54772 -31.19250 -29.81442 -28.11269
-24.59965 -23.67430 -22.71602 -20.58011 -19.52710 -18.12439 -17.38864 -16.62090
-15.98711 -15.85704 -15.22428 -14.87836 -14.57235 -14.45672 -13.97898 -13.60802
-13.01341 -12.94527 -12.87710 -12.52995 -11.91615 -11.90139 -11.78759 -11.44448
-11.30754 -10.74846 -10.63812 -10.30206 -9.18971 -8.55865 -8.25695 -6.67344
1.04848 1.14240 1.41106 1.56848 1.59630 2.21657 2.90072 2.92949
3.90595 3.96976 4.16960 4.17651 4.32673 4.63467 4.75564 4.85672
4.87650 5.02936 5.09044 5.12945 5.21271 5.28658 5.35277 5.40598
5.59487 5.85547 5.99140 6.13638 6.50862 6.71786 7.00051 7.03569
7.39510 8.37677 8.52266
Molecular weight = 219.11amu
Principal moments of inertia in cm(-1)
A = 0.027157 B = 0.011829 C = 0.008359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1030.794250 B = 2366.529109 C = 3348.840510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.746 5.746
2 C 0.023 3.977
3 Si 0.988 3.012
4 H -0.249 1.249
5 H -0.267 1.267
6 H -0.267 1.267
7 C -0.448 4.448
8 H 0.100 0.900
9 C 0.263 3.737
10 N -0.597 5.597
11 C 0.527 3.473
12 N -0.829 5.829
13 N -0.678 5.678
14 C 0.176 3.824
15 C -0.333 4.333
16 C -0.035 4.035
17 C -0.111 4.111
18 C -0.106 4.106
19 C -0.055 4.055
20 H 0.279 0.721
21 H 0.407 0.593
22 H 0.406 0.594
23 H 0.052 0.948
24 H 0.049 0.951
25 H 0.056 0.944
26 H 0.087 0.913
27 H 0.098 0.902
28 H 0.056 0.944
29 H 0.079 0.921
30 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.057 -4.297 0.075 6.637
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.368 5.368
2 C -0.200 4.200
3 Si 0.808 3.192
4 H -0.172 1.172
5 H -0.192 1.192
6 H -0.192 1.192
7 C -0.482 4.482
8 H 0.118 0.882
9 C 0.132 3.868
10 N -0.327 5.327
11 C 0.166 3.834
12 N -0.381 5.381
13 N -0.410 5.410
14 C 0.038 3.962
15 C -0.343 4.343
16 C -0.073 4.073
17 C -0.148 4.148
18 C -0.143 4.143
19 C -0.093 4.093
20 H 0.090 0.910
21 H 0.237 0.763
22 H 0.236 0.764
23 H 0.070 0.930
24 H 0.067 0.933
25 H 0.075 0.925
26 H 0.105 0.895
27 H 0.116 0.884
28 H 0.075 0.925
29 H 0.098 0.902
30 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 3.944 -4.200 0.066 5.762
hybrid contribution 0.075 0.908 -0.003 0.912
sum 4.019 -3.292 0.063 5.195
Atomic orbital electron populations
1.70214 1.09090 1.29098 1.28438 1.27103 0.95736 1.04763 0.92379
0.85072 0.79703 0.75739 0.78703 1.17213 1.19212 1.19193 1.20097
0.95111 0.89624 1.43352 0.88186 1.19121 0.87615 0.93432 0.86672
1.68912 1.09408 1.25230 1.29144 1.19928 0.88125 0.86240 0.89075
1.41327 1.00651 1.11126 1.84957 1.67586 1.11014 1.28113 1.34275
1.20980 0.88284 0.95636 0.91261 1.20886 0.98017 0.93909 1.21475
1.19820 0.89894 0.97839 0.99767 1.21548 1.00131 0.93726 0.99429
1.21510 0.93311 0.99928 0.99580 1.20260 0.96030 0.90815 1.02221
0.91028 0.76268 0.76362 0.92961 0.93301 0.92533 0.89467 0.88402
0.92507 0.90242 0.90699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.75 -40.20 11.51 21.85 0.25 -39.95 16
2 C 0.02 1.19 5.50 85.32 0.47 1.65 16
3 Si 0.99 37.58 29.56 68.60 2.03 39.60 16
4 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16
5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16
6 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16
7 C -0.45 -24.16 8.66 23.54 0.20 -23.96 16
8 H 0.10 4.97 6.24 -2.91 -0.02 4.95 16
9 C 0.26 15.04 6.58 40.39 0.27 15.30 16
10 N -0.60 -34.82 8.06 -191.39 -1.54 -36.36 16
11 C 0.53 28.01 8.66 261.65 2.27 30.27 16
12 N -0.83 -35.24 9.07 -59.96 -0.54 -35.79 16
13 N -0.68 -34.61 10.32 -186.87 -1.93 -36.54 16
14 C 0.18 8.36 6.63 42.17 0.28 8.64 16
15 C -0.33 -16.66 5.80 -19.39 -0.11 -16.77 16
16 C -0.03 -1.40 4.87 29.67 0.14 -1.25 16
17 C -0.11 -3.37 5.98 30.64 0.18 -3.19 16
18 C -0.11 -3.02 5.97 30.63 0.18 -2.83 16
19 C -0.06 -1.96 5.95 29.71 0.18 -1.78 16
20 H 0.28 13.49 8.29 -92.71 -0.77 12.72 16
21 H 0.41 14.62 8.94 -92.71 -0.83 13.79 16
22 H 0.41 16.36 8.94 -92.70 -0.83 15.53 16
23 H 0.05 2.14 6.91 -2.38 -0.02 2.12 16
24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
25 H 0.06 1.73 8.10 -2.39 -0.02 1.72 16
26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
27 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16
28 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16
29 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16
30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16
Total: -1.00 -67.64 250.68 1.85 -65.79
By element:
Atomic # 1 Polarization: 37.63 SS G_CDS: -0.48 Total: 37.15 kcal
Atomic # 6 Polarization: 2.03 SS G_CDS: 4.06 Total: 6.09 kcal
Atomic # 7 Polarization: -144.87 SS G_CDS: -3.76 Total: -148.63 kcal
Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.60 kcal
Total: -67.64 1.85 -65.79 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261083262.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.399 kcal
(2) G-P(sol) polarization free energy of solvation -67.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.605 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds