Wall clock time and date at job start Mon Mar 30 2020 02:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46947 * 300.00087 * 3 2 1 6 6 H 1.48507 * 109.46995 * 60.00129 * 3 2 1 7 7 C 1.37872 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00225 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.38397 * 57.78145 * 9 7 2 11 11 C 1.54351 * 110.57759 * 295.80338 * 9 7 2 12 12 C 1.54489 * 102.04374 * 215.75421 * 11 9 7 13 13 C 1.51113 * 105.01416 * 25.31865 * 12 11 9 14 14 N 1.33837 * 143.17009 * 163.21544 * 13 12 11 15 15 N 1.28651 * 108.83896 * 179.97438 * 14 13 12 16 16 N 1.28733 * 110.16336 * 0.02562 * 15 14 13 17 17 C 1.46503 * 125.90185 * 180.02562 * 16 15 14 18 18 C 1.52998 * 117.50049 * 8.74416 * 17 16 15 19 19 C 1.52999 * 117.49620 * 300.08753 * 17 16 15 20 20 C 1.35044 * 110.30869 * 343.18984 * 13 12 11 21 21 H 0.97006 * 119.99395 * 359.97438 * 1 2 3 22 22 H 1.08999 * 111.05564 * 97.48726 * 11 9 7 23 23 H 1.09007 * 110.76537 * 333.89064 * 11 9 7 24 24 H 1.09001 * 110.33314 * 266.43475 * 12 11 9 25 25 H 1.09007 * 110.42340 * 144.24637 * 12 11 9 26 26 H 1.09004 * 115.54637 * 154.42124 * 17 16 15 27 27 H 1.09002 * 117.49855 * 0.02562 * 18 17 16 28 28 H 1.09003 * 117.49498 * 145.01690 * 18 17 16 29 29 H 1.09007 * 117.49844 * 214.98224 * 19 17 16 30 30 H 1.08996 * 117.50295 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5897 -2.5557 -0.8641 11 6 0.4345 -2.6542 1.3012 12 6 0.5408 -4.1718 1.5696 13 6 1.8180 -4.6018 0.8858 14 7 2.7224 -5.5865 0.8268 15 7 3.6208 -5.2741 -0.0394 16 7 3.3560 -4.1266 -0.5592 17 6 4.1515 -3.4424 -1.5817 18 6 5.2925 -4.2277 -2.2317 19 6 5.6039 -3.1054 -1.2385 20 6 2.2152 -3.6620 0.0010 21 1 -0.4849 0.8401 0.0004 22 1 -0.6033 -2.3572 1.1499 23 1 0.8868 -2.0827 2.1119 24 1 -0.3137 -4.6935 1.1385 25 1 0.6010 -4.3654 2.6406 26 1 3.6054 -2.7367 -2.2079 27 1 5.4510 -5.2534 -1.8988 28 1 5.4973 -4.0384 -3.2854 29 1 6.0136 -2.1781 -1.6391 30 1 5.9677 -3.3930 -0.2521 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261206583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:48 Heat of formation + Delta-G solvation = 111.221207 kcal Electronic energy + Delta-G solvation = -14791.296735 eV Core-core repulsion = 12396.089107 eV Total energy + Delta-G solvation = -2395.207628 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.26301 -38.64425 -37.76714 -34.48577 -33.47318 -29.81560 -29.59119 -25.93713 -25.07793 -23.51803 -22.72501 -21.85777 -20.52172 -18.62240 -18.18890 -17.03540 -16.52475 -16.10314 -15.35045 -14.78774 -14.59779 -14.02521 -13.89273 -13.63742 -13.14094 -12.88410 -12.58768 -12.55309 -12.45717 -12.25180 -12.08783 -11.80628 -11.58378 -11.26204 -11.16848 -10.56302 -10.44902 -9.59707 -8.15881 -6.26868 0.68400 1.37843 1.42014 1.46180 1.54836 1.59433 2.42947 2.66173 3.00827 3.17775 3.40808 3.75944 3.81467 3.86888 4.25635 4.47579 4.51589 4.60041 4.71023 4.80679 4.94223 5.01810 5.07932 5.11359 5.27141 5.38779 5.57366 5.66746 5.80326 5.88950 6.20220 6.75665 7.40772 7.57964 8.92539 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.012350 C = 0.008723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.223271 B = 2266.677963 C = 3209.123428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.121 3.879 10 H 0.031 0.969 11 C -0.077 4.077 12 C -0.024 4.024 13 C -0.081 4.081 14 N -0.287 5.287 15 N -0.121 5.121 16 N -0.248 5.248 17 C 0.028 3.972 18 C -0.136 4.136 19 C -0.159 4.159 20 C -0.008 4.008 21 H 0.266 0.734 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.103 0.897 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -2.647 -3.307 7.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.100 3.900 10 H 0.049 0.951 11 C -0.116 4.116 12 C -0.063 4.063 13 C -0.220 4.220 14 N -0.153 5.153 15 N -0.098 5.098 16 N -0.038 5.038 17 C -0.075 4.075 18 C -0.173 4.173 19 C -0.198 4.198 20 C -0.142 4.142 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.172 0.828 27 H 0.121 0.879 28 H 0.165 0.835 29 H 0.156 0.844 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.698 -3.773 -3.313 8.371 hybrid contribution -0.356 1.771 -0.014 1.806 sum 6.342 -2.003 -3.327 7.436 Atomic orbital electron populations 1.70026 1.06908 1.27707 1.49977 1.25564 0.95594 1.01797 0.94279 0.85609 0.79083 0.79921 0.77700 1.19372 1.20374 1.20826 1.21154 0.92660 0.90635 1.52384 0.93148 1.17928 0.88989 0.87299 0.95740 0.95119 1.22178 1.00444 0.91958 0.97016 1.20557 0.89570 0.96177 0.99979 1.23242 1.01753 0.93050 1.03945 1.74410 1.01812 1.24834 1.14229 1.78112 1.21749 0.99629 1.10279 1.46057 1.16873 1.13076 1.27839 1.22568 0.88763 1.02444 0.93709 1.23509 0.95456 0.97601 1.00783 1.23499 0.93052 1.02029 1.01185 1.23642 0.90475 1.02266 0.97772 0.92518 0.90529 0.93049 0.88956 0.89534 0.82807 0.87907 0.83470 0.84444 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.95 12.56 21.45 0.27 -47.68 16 2 C 0.03 1.45 5.34 84.65 0.45 1.90 16 3 Si 0.95 40.42 29.54 68.60 2.03 42.45 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -27.08 8.44 25.60 0.22 -26.86 16 8 H 0.05 2.59 7.76 -2.91 -0.02 2.57 16 9 C 0.12 5.82 2.74 -11.71 -0.03 5.79 16 10 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 11 C -0.08 -3.36 5.82 31.56 0.18 -3.17 16 12 C -0.02 -0.90 6.78 30.49 0.21 -0.69 16 13 C -0.08 -3.60 8.12 41.65 0.34 -3.27 16 14 N -0.29 -13.11 12.41 -48.41 -0.60 -13.71 16 15 N -0.12 -5.24 12.53 37.02 0.46 -4.77 16 16 N -0.25 -10.34 3.67 -313.83 -1.15 -11.49 16 17 C 0.03 0.90 6.88 44.99 0.31 1.21 16 18 C -0.14 -3.18 10.14 30.62 0.31 -2.87 16 19 C -0.16 -4.15 10.46 30.62 0.32 -3.83 16 20 C -0.01 -0.34 6.93 41.40 0.29 -0.06 16 21 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 22 H 0.08 3.36 8.03 -2.39 -0.02 3.34 16 23 H 0.05 2.36 7.90 -2.38 -0.02 2.34 16 24 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 25 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 26 H 0.15 4.92 8.14 -2.39 -0.02 4.91 16 27 H 0.10 2.62 7.82 -2.39 -0.02 2.60 16 28 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.14 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -60.81 260.51 4.73 -56.08 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.14 Total: 10.97 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 2.59 Total: -31.85 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.02 Total: -77.65 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -60.81 4.73 -56.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.300 kcal (2) G-P(sol) polarization free energy of solvation -60.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds