Wall clock time and date at job start Mon Mar 30 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48503 * 109.46807 * 239.99846 * 3 2 1 5 5 H 1.48491 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47286 * 120.00072 * 3 2 1 7 7 C 1.37872 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46955 * 180.02562 * 9 7 2 11 11 H 1.08997 * 108.73658 * 56.69956 * 10 9 7 12 12 C 1.54231 * 108.70745 * 298.51040 * 10 9 7 13 13 C 1.54070 * 112.32246 * 197.53438 * 12 10 9 14 14 N 1.44269 * 111.91825 * 318.78844 * 13 12 10 15 15 C 1.47801 * 109.45574 * 96.47375 * 14 13 12 16 16 C 1.45864 * 112.92690 * 276.74544 * 15 14 13 17 17 C 1.50459 * 108.76856 * 175.00369 * 10 9 7 18 18 F 1.39900 * 109.57995 * 93.14053 * 17 10 9 19 19 F 1.39898 * 109.57774 * 332.76066 * 17 10 9 20 20 H 0.96997 * 120.00672 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47281 * 60.00511 * 9 7 2 22 22 H 1.09001 * 109.47329 * 300.00412 * 9 7 2 23 23 H 1.08999 * 108.96443 * 76.75921 * 12 10 9 24 24 H 1.08994 * 108.83948 * 318.22327 * 12 10 9 25 25 H 1.09002 * 108.97963 * 198.18503 * 13 12 10 26 26 H 1.09000 * 108.97813 * 79.39154 * 13 12 10 27 27 H 1.00891 * 111.00257 * 219.34518 * 14 13 12 28 28 H 1.09003 * 108.78988 * 37.63706 * 15 14 13 29 29 H 1.09002 * 108.79162 * 155.85380 * 15 14 13 30 30 H 1.08991 * 109.05646 * 181.86775 * 16 15 14 31 31 H 1.08998 * 109.05658 * 300.85615 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9036 -3.5591 0.8654 12 6 3.0968 -3.5860 -1.2810 13 6 3.8115 -4.9158 -1.5888 14 7 4.3464 -5.5281 -0.3970 15 6 3.3932 -6.5389 0.1073 16 6 2.3344 -5.9619 0.9280 17 6 1.4814 -4.9521 0.1280 18 9 1.2182 -5.4667 -1.1461 19 9 0.2766 -4.7201 0.8003 20 1 -0.4851 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5563 0.8919 23 1 3.8447 -2.8017 -1.1641 24 1 2.4481 -3.3313 -2.1190 25 1 4.6271 -4.7266 -2.2868 26 1 3.1012 -5.6011 -2.0513 27 1 5.2495 -5.9405 -0.5765 28 1 2.9401 -7.0492 -0.7427 29 1 3.9396 -7.2706 0.7025 30 1 1.6903 -6.7621 1.2921 31 1 2.7830 -5.4509 1.7799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261235629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:59 Heat of formation + Delta-G solvation = -107.333920 kcal Electronic energy + Delta-G solvation = -16008.142313 eV Core-core repulsion = 13152.768237 eV Total energy + Delta-G solvation = -2855.374076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.34921 -46.30569 -37.89923 -34.27403 -32.10902 -31.94750 -27.81475 -25.47132 -24.01449 -21.70703 -20.54180 -19.29418 -17.11129 -16.59076 -16.12723 -15.61710 -15.45685 -14.53546 -14.29822 -14.15630 -13.16577 -12.65473 -12.57490 -12.46460 -12.18609 -12.08370 -12.01145 -11.26703 -11.05079 -10.87064 -10.78612 -10.52565 -10.33466 -9.96250 -9.81659 -9.08760 -8.97931 -8.36141 -8.25822 -5.94233 -3.96738 3.36414 3.40838 3.43009 4.18678 4.30402 4.49514 4.89989 5.04509 5.13096 5.31700 5.40662 5.47098 5.53940 5.74657 5.75880 5.87187 5.98971 6.15915 6.37306 6.50822 6.79464 6.96085 7.05633 7.21002 7.52038 7.71720 7.81703 8.04332 8.44356 9.09065 9.66270 11.17095 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.039657 B = 0.009426 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.877633 B = 2969.934752 C = 3358.780838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.115 4.115 11 H 0.087 0.913 12 C -0.084 4.084 13 C 0.042 3.958 14 N -0.679 5.679 15 C 0.059 3.941 16 C -0.152 4.152 17 C 0.295 3.705 18 F -0.208 7.208 19 F -0.199 7.199 20 H 0.260 0.740 21 H 0.018 0.982 22 H 0.028 0.972 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.341 0.659 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -12.278 -0.670 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.134 4.134 11 H 0.105 0.895 12 C -0.122 4.122 13 C -0.088 4.088 14 N -0.309 5.309 15 C -0.070 4.070 16 C -0.191 4.191 17 C 0.258 3.742 18 F -0.190 7.190 19 F -0.179 7.179 20 H 0.070 0.930 21 H 0.036 0.964 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.158 0.842 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.666 -11.656 -0.264 13.430 hybrid contribution 0.329 0.257 -0.661 0.782 sum 6.994 -11.399 -0.925 13.406 Atomic orbital electron populations 1.69970 1.06040 1.26620 1.50668 1.25021 0.94809 0.99174 0.95459 0.86670 0.79552 0.83275 0.78564 1.20295 1.21381 1.20264 1.21140 0.92908 0.90628 1.50671 0.92452 1.19278 0.93329 0.90755 0.98142 1.21885 0.98379 0.92748 1.00419 0.89475 1.21718 0.98208 0.95389 0.96894 1.22103 0.98531 0.97636 0.90542 1.59923 1.04941 1.32633 1.33442 1.20690 0.94035 0.93457 0.98856 1.21563 0.97652 0.99467 1.00382 1.21031 0.81386 0.95846 0.75891 1.92874 1.94879 1.88768 1.42441 1.92974 1.49094 1.95537 1.80333 0.92990 0.96405 0.95378 0.90894 0.91739 0.92490 0.93345 0.84164 0.94003 0.90895 0.90148 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.58 8.51 -34.44 -0.29 -14.87 16 8 H 0.06 1.56 6.91 -52.49 -0.36 1.20 16 9 C 0.02 0.59 3.86 -27.88 -0.11 0.48 16 10 C -0.12 -2.44 1.73 -91.24 -0.16 -2.60 16 11 H 0.09 1.85 7.38 -51.93 -0.38 1.47 16 12 C -0.08 -1.60 4.54 -25.53 -0.12 -1.72 16 13 C 0.04 0.62 5.86 -4.67 -0.03 0.59 16 14 N -0.68 -8.98 6.40 -118.14 -0.76 -9.73 16 15 C 0.06 0.73 5.73 -6.70 -0.04 0.69 16 16 C -0.15 -2.21 5.19 -29.31 -0.15 -2.37 16 17 C 0.29 5.65 1.88 -27.21 -0.05 5.59 16 18 F -0.21 -4.03 13.36 2.25 0.03 -4.00 16 19 F -0.20 -4.30 15.26 2.25 0.03 -4.27 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 22 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 23 H 0.07 1.44 7.27 -51.93 -0.38 1.06 16 24 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.74 5.43 -51.93 -0.28 0.46 16 27 H 0.34 3.53 8.89 -39.30 -0.35 3.18 16 28 H 0.04 0.53 6.65 -51.93 -0.35 0.19 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 LS Contribution 247.91 15.07 3.74 3.74 Total: -1.00 -31.10 247.91 -6.38 -37.48 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.10 Total: -0.74 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.04 Total: -12.65 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.02 Total: -36.42 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.06 Total: -8.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.10 -6.38 -37.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.851 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds