Wall clock time and date at job start Mon Mar 30 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48503 * 109.46807 * 239.99846 * 3 2 1 5 5 H 1.48491 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47286 * 120.00072 * 3 2 1 7 7 C 1.37872 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46955 * 180.02562 * 9 7 2 11 11 H 1.08997 * 108.73658 * 56.69956 * 10 9 7 12 12 C 1.54231 * 108.70745 * 298.51040 * 10 9 7 13 13 C 1.54070 * 112.32246 * 197.53438 * 12 10 9 14 14 N 1.44269 * 111.91825 * 318.78844 * 13 12 10 15 15 C 1.47801 * 109.45574 * 96.47375 * 14 13 12 16 16 C 1.45864 * 112.92690 * 276.74544 * 15 14 13 17 17 C 1.50459 * 108.76856 * 175.00369 * 10 9 7 18 18 F 1.39900 * 109.57995 * 93.14053 * 17 10 9 19 19 F 1.39898 * 109.57774 * 332.76066 * 17 10 9 20 20 H 0.96997 * 120.00672 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47281 * 60.00511 * 9 7 2 22 22 H 1.09001 * 109.47329 * 300.00412 * 9 7 2 23 23 H 1.08999 * 108.96443 * 76.75921 * 12 10 9 24 24 H 1.08994 * 108.83948 * 318.22327 * 12 10 9 25 25 H 1.09002 * 108.97963 * 198.18503 * 13 12 10 26 26 H 1.09000 * 108.97813 * 79.39154 * 13 12 10 27 27 H 1.00891 * 111.00257 * 219.34518 * 14 13 12 28 28 H 1.09003 * 108.78988 * 37.63706 * 15 14 13 29 29 H 1.09002 * 108.79162 * 155.85380 * 15 14 13 30 30 H 1.08991 * 109.05646 * 181.86775 * 16 15 14 31 31 H 1.08998 * 109.05658 * 300.85615 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9036 -3.5591 0.8654 12 6 3.0968 -3.5860 -1.2810 13 6 3.8115 -4.9158 -1.5888 14 7 4.3464 -5.5281 -0.3970 15 6 3.3932 -6.5389 0.1073 16 6 2.3344 -5.9619 0.9280 17 6 1.4814 -4.9521 0.1280 18 9 1.2182 -5.4667 -1.1461 19 9 0.2766 -4.7201 0.8003 20 1 -0.4851 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5563 0.8919 23 1 3.8447 -2.8017 -1.1641 24 1 2.4481 -3.3313 -2.1190 25 1 4.6271 -4.7266 -2.2868 26 1 3.1012 -5.6011 -2.0513 27 1 5.2495 -5.9405 -0.5765 28 1 2.9401 -7.0492 -0.7427 29 1 3.9396 -7.2706 0.7025 30 1 1.6903 -6.7621 1.2921 31 1 2.7830 -5.4509 1.7799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261235629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:59 Heat of formation + Delta-G solvation = -128.926763 kcal Electronic energy + Delta-G solvation = -16009.078649 eV Core-core repulsion = 13152.768237 eV Total energy + Delta-G solvation = -2856.310412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.93202 -47.91448 -39.15913 -36.08849 -33.96100 -33.31121 -29.64395 -27.07904 -25.58674 -23.49443 -21.75946 -20.92493 -18.73650 -18.39217 -17.54566 -17.22593 -16.81033 -16.49330 -15.84590 -15.49370 -14.74904 -14.33894 -14.11967 -14.00746 -13.93359 -13.76719 -13.39181 -12.84382 -12.75385 -12.62693 -12.52452 -12.15835 -11.75112 -11.64231 -11.60059 -11.05334 -10.85996 -10.55163 -9.39122 -8.18517 -6.29980 1.39787 1.43655 1.51333 2.41005 2.88581 3.14303 3.22470 3.44981 3.65175 3.67600 4.14214 4.27960 4.30339 4.43002 4.57923 4.60539 4.85062 4.90381 4.98658 5.06879 5.16304 5.20437 5.41273 5.46178 5.63439 5.81105 6.08105 6.21065 6.66644 6.85132 7.38651 8.93865 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.039657 B = 0.009426 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.877633 B = 2969.934752 C = 3358.780838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.029 3.971 10 C -0.107 4.107 11 H 0.089 0.911 12 C -0.082 4.082 13 C 0.054 3.946 14 N -0.686 5.686 15 C 0.057 3.943 16 C -0.141 4.141 17 C 0.281 3.719 18 F -0.211 7.211 19 F -0.220 7.220 20 H 0.262 0.738 21 H -0.021 1.021 22 H -0.006 1.006 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.363 0.637 28 H 0.043 0.957 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -13.213 -0.468 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.086 0.914 9 C -0.008 4.008 10 C -0.126 4.126 11 H 0.107 0.893 12 C -0.121 4.121 13 C -0.076 4.076 14 N -0.319 5.319 15 C -0.072 4.072 16 C -0.179 4.179 17 C 0.246 3.754 18 F -0.192 7.192 19 F -0.201 7.201 20 H 0.071 0.929 21 H -0.003 1.003 22 H 0.012 0.988 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.183 0.817 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.153 -12.618 -0.063 15.588 hybrid contribution -0.488 0.553 -0.723 1.033 sum 8.665 -12.065 -0.786 14.875 Atomic orbital electron populations 1.70133 1.08044 1.27753 1.51793 1.26048 0.95717 1.03582 0.94852 0.85464 0.78182 0.77859 0.79335 1.18961 1.21130 1.18925 1.21533 0.93527 0.91429 1.50196 0.91407 1.19096 0.93764 0.93379 0.94589 1.21752 0.97320 0.91788 1.01748 0.89253 1.21673 0.97477 0.98232 0.94693 1.21873 0.98933 0.95078 0.91735 1.59753 1.06190 1.33493 1.32471 1.20772 0.93675 0.93586 0.99169 1.21593 0.97762 0.98641 0.99919 1.21438 0.80952 0.96531 0.76524 1.92863 1.94915 1.88613 1.42829 1.92932 1.50604 1.95808 1.80724 0.92896 1.00255 0.98775 0.91780 0.94218 0.89983 0.93581 0.81707 0.93867 0.86901 0.87846 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.35 13.29 21.45 0.28 -59.06 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.64 8.51 25.60 0.22 -30.42 16 8 H 0.07 3.70 6.91 -2.91 -0.02 3.68 16 9 C 0.03 1.61 3.86 29.85 0.12 1.73 16 10 C -0.11 -4.59 1.73 -11.20 -0.02 -4.61 16 11 H 0.09 3.77 7.38 -2.39 -0.02 3.76 16 12 C -0.08 -3.13 4.54 31.37 0.14 -2.99 16 13 C 0.05 1.49 5.86 87.16 0.51 2.00 16 14 N -0.69 -15.70 6.40 -527.69 -3.38 -19.08 16 15 C 0.06 1.18 5.73 83.94 0.48 1.67 16 16 C -0.14 -3.74 5.19 28.92 0.15 -3.59 16 17 C 0.28 10.77 1.88 30.29 0.06 10.82 16 18 F -0.21 -8.13 13.36 44.97 0.60 -7.53 16 19 F -0.22 -9.82 15.26 44.97 0.69 -9.14 16 20 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 21 H -0.02 -1.31 8.08 -2.39 -0.02 -1.33 16 22 H -0.01 -0.38 7.13 -2.39 -0.02 -0.39 16 23 H 0.06 2.51 7.27 -2.39 -0.02 2.49 16 24 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.31 5.43 -2.39 -0.01 1.30 16 27 H 0.36 5.86 8.89 -89.70 -0.80 5.06 16 28 H 0.04 0.93 6.65 -2.39 -0.02 0.92 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.10 2.62 7.58 -2.39 -0.02 2.60 16 Total: -1.00 -69.80 247.91 2.67 -67.12 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.34 Total: 5.75 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 2.12 Total: -25.22 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -3.09 Total: -78.14 kcal Atomic # 9 Polarization: -17.95 SS G_CDS: 1.29 Total: -16.67 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.80 2.67 -67.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.802 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds