Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.29545 * 59.29661 * 9 7 2 11 11 C 1.54493 * 110.33353 * 181.45025 * 9 7 2 12 12 C 1.54646 * 101.91059 * 144.29452 * 11 9 7 13 13 C 1.51066 * 105.05216 * 334.66830 * 12 11 9 14 14 C 1.35033 * 110.37903 * 16.67415 * 13 12 11 15 15 N 1.33843 * 106.52608 * 180.02562 * 14 13 12 16 16 N 1.28655 * 108.83302 * 359.97438 * 15 14 13 17 17 N 1.28736 * 110.16509 * 0.02562 * 16 15 14 18 18 C 1.46499 * 125.90387 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.49677 * 8.71105 * 18 17 16 20 20 C 1.53003 * 117.49395 * 300.05397 * 18 17 16 21 21 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 22 22 H 1.08995 * 110.93387 * 262.55429 * 11 9 7 23 23 H 1.08999 * 110.93094 * 26.22155 * 11 9 7 24 24 H 1.08994 * 110.41000 * 215.72036 * 12 11 9 25 25 H 1.09000 * 110.29313 * 93.55897 * 12 11 9 26 26 H 1.08998 * 115.55033 * 154.38740 * 18 17 16 27 27 H 1.08999 * 117.50316 * 0.02562 * 19 18 17 28 28 H 1.09006 * 117.49598 * 145.02837 * 19 18 17 29 29 H 1.08998 * 117.49896 * 214.98091 * 20 18 17 30 30 H 1.09006 * 117.50211 * 359.97349 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6097 -2.5654 -0.8793 11 6 2.2369 -3.6881 0.0355 12 6 1.4759 -4.7072 0.9151 13 6 0.5555 -3.8731 1.7749 14 6 0.4291 -2.6309 1.2607 15 7 -0.3954 -1.9631 2.0766 16 7 -0.7554 -2.7443 3.0334 17 7 -0.2079 -3.9008 2.8920 18 6 -0.3819 -5.0488 3.7853 19 6 -1.4464 -4.9380 4.8786 20 6 0.0382 -4.8768 5.2464 21 1 -0.4850 -0.8401 0.0004 22 1 2.4056 -4.0846 -0.9657 23 1 3.1786 -3.3992 0.5021 24 1 2.1732 -5.2665 1.5388 25 1 0.8973 -5.3879 0.2906 26 1 -0.2286 -6.0268 3.3293 27 1 -2.0176 -4.0112 4.9330 28 1 -1.9932 -5.8434 5.1422 29 1 0.4675 -5.7419 5.7518 30 1 0.4445 -3.9097 5.5429 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = 134.403913 kcal Electronic energy + Delta-G solvation = -14757.323383 eV Core-core repulsion = 12363.121032 eV Total energy + Delta-G solvation = -2394.202350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.48354 -37.51582 -36.14831 -32.74872 -31.54232 -28.28287 -27.21081 -23.86727 -23.44397 -22.62145 -21.29264 -20.05626 -19.13636 -17.18236 -16.47524 -15.43535 -15.08730 -13.85897 -13.65919 -13.47806 -13.23772 -12.69655 -12.22903 -12.07073 -11.71961 -11.38263 -11.11048 -10.83770 -10.68591 -10.63902 -10.20756 -10.08523 -9.86870 -9.51318 -8.94601 -8.62349 -8.19924 -7.72527 -6.17425 -3.92642 2.27402 2.76210 3.52679 3.58678 3.61733 3.70511 3.72989 4.40664 4.57907 4.65415 4.68410 4.73659 5.32351 5.42835 5.43396 5.61274 5.66174 5.74547 5.84057 5.96856 5.99617 6.33739 6.48320 6.58752 6.70403 6.93391 7.34984 7.38077 7.51087 8.23496 8.56522 9.03814 9.54142 9.82852 11.23901 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.039327 B = 0.009158 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.802668 B = 3056.579723 C = 3452.857046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.025 3.975 3 Si 1.072 2.928 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.608 4.608 8 H 0.053 0.947 9 C 0.103 3.897 10 H 0.038 0.962 11 C -0.100 4.100 12 C -0.024 4.024 13 C -0.097 4.097 14 C 0.027 3.973 15 N -0.229 5.229 16 N -0.116 5.116 17 N -0.262 5.262 18 C 0.064 3.936 19 C -0.162 4.162 20 C -0.173 4.173 21 H 0.280 0.720 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -12.857 6.051 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.184 4.184 3 Si 0.901 3.099 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.646 4.646 8 H 0.071 0.929 9 C 0.083 3.917 10 H 0.055 0.945 11 C -0.138 4.138 12 C -0.063 4.063 13 C -0.228 4.228 14 C -0.112 4.112 15 N -0.093 5.093 16 N -0.092 5.092 17 N -0.055 5.055 18 C -0.041 4.041 19 C -0.200 4.200 20 C -0.212 4.212 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.070 -10.317 6.931 12.430 hybrid contribution 0.781 -2.444 -0.242 2.577 sum 0.851 -12.761 6.689 14.433 Atomic orbital electron populations 1.70570 1.06719 1.31940 1.41982 1.25717 0.96613 1.02378 0.93661 0.83518 0.74330 0.75229 0.76826 1.21730 1.21491 1.21424 1.21815 0.93773 0.90709 1.58291 0.92909 1.17983 0.91070 0.95218 0.87442 0.94463 1.22441 0.98890 0.94466 0.98052 1.20494 0.94590 0.96499 0.94754 1.22718 1.05002 1.02258 0.92817 1.23922 0.97297 0.89040 1.00948 1.74866 1.12180 1.22450 0.99838 1.78404 1.20458 0.88656 1.21729 1.45850 1.31765 1.10307 1.17551 1.21960 1.08090 0.87921 0.86104 1.23339 0.92304 1.05129 0.99186 1.23451 0.98017 1.04591 0.95114 0.90734 0.91142 0.91080 0.91873 0.90956 0.83916 0.86772 0.87254 0.87226 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.78 13.08 55.43 0.72 -27.06 16 2 C 0.03 0.75 5.33 -17.82 -0.09 0.66 16 3 Si 1.07 26.42 29.90 -169.99 -5.08 21.33 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.61 -17.39 8.52 -34.44 -0.29 -17.68 16 8 H 0.05 1.48 7.61 -52.49 -0.40 1.08 16 9 C 0.10 2.64 2.47 -91.93 -0.23 2.41 16 10 H 0.04 1.00 8.00 -51.93 -0.42 0.59 16 11 C -0.10 -1.96 6.64 -25.08 -0.17 -2.12 16 12 C -0.02 -0.41 6.78 -26.84 -0.18 -0.59 16 13 C -0.10 -2.08 7.67 -82.01 -0.63 -2.71 16 14 C 0.03 0.70 6.11 -82.65 -0.51 0.20 16 15 N -0.23 -6.35 11.21 33.35 0.37 -5.98 16 16 N -0.12 -2.77 12.53 60.35 0.76 -2.01 16 17 N -0.26 -5.27 3.67 -50.55 -0.19 -5.45 16 18 C 0.06 0.88 6.88 -67.93 -0.47 0.41 16 19 C -0.16 -1.87 10.14 -26.70 -0.27 -2.14 16 20 C -0.17 -2.00 10.46 -26.69 -0.28 -2.28 16 21 H 0.28 8.96 5.66 -40.82 -0.23 8.72 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.07 1.41 7.78 -51.93 -0.40 1.00 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.14 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.11 1.56 7.82 -51.93 -0.41 1.15 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 256.56 15.07 3.87 3.87 Total: -1.00 -34.91 256.56 -6.27 -41.18 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.61 Total: -2.04 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.11 Total: -23.83 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 1.67 Total: -40.50 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -5.08 Total: 21.33 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.91 -6.27 -41.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.584 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds