Wall clock time and date at job start Mon Mar 30 2020 02:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48501 * 109.47340 * 274.20386 * 3 2 1 5 5 H 1.48507 * 109.46819 * 34.20718 * 3 2 1 6 6 H 1.48497 * 109.46952 * 154.20151 * 3 2 1 7 7 C 1.37873 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00190 * 186.70869 * 7 2 1 9 9 C 1.50699 * 119.99714 * 6.98107 * 7 2 1 10 10 H 1.08999 * 110.29970 * 302.86214 * 9 7 2 11 11 C 1.54493 * 110.33368 * 180.60074 * 9 7 2 12 12 C 1.54521 * 101.97171 * 215.60086 * 11 9 7 13 13 C 1.51062 * 104.98625 * 25.51597 * 12 11 9 14 14 C 1.35039 * 110.38245 * 343.18227 * 13 12 11 15 15 N 1.33842 * 106.52754 * 180.02562 * 14 13 12 16 16 N 1.28651 * 108.83239 * 0.02562 * 15 14 13 17 17 N 1.28741 * 110.16837 * 359.97438 * 16 15 14 18 18 C 1.46498 * 125.90560 * 179.97438 * 17 16 15 19 19 C 1.53003 * 117.49759 * 8.77674 * 18 17 16 20 20 C 1.52998 * 117.50019 * 300.11776 * 18 17 16 21 21 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 22 22 H 1.08998 * 110.93023 * 333.78277 * 11 9 7 23 23 H 1.09004 * 110.93473 * 97.44283 * 11 9 7 24 24 H 1.08998 * 110.36039 * 266.63231 * 12 11 9 25 25 H 1.08995 * 110.31746 * 144.38313 * 12 11 9 26 26 H 1.08997 * 115.54852 * 154.44623 * 18 17 16 27 27 H 1.09003 * 117.49622 * 0.02562 * 19 18 17 28 28 H 1.09001 * 117.49815 * 145.02188 * 19 18 17 29 29 H 1.08999 * 117.50328 * 214.98180 * 20 18 17 30 30 H 1.09006 * 117.49771 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4078 2.0978 -1.3963 5 1 1.4938 2.6254 0.7872 6 1 3.5882 1.4162 0.6093 7 6 2.0046 -1.1940 -0.0005 8 1 3.0790 -1.1972 0.1087 9 6 1.2594 -2.4942 -0.1597 10 1 0.5035 -2.5946 0.6190 11 6 2.2423 -3.6853 -0.1137 12 6 1.6089 -4.6629 -1.1290 13 6 0.8156 -3.7881 -2.0709 14 6 0.6185 -2.5682 -1.5263 15 7 -0.0868 -1.8624 -2.4183 16 7 -0.3112 -2.6004 -3.4479 17 7 0.2128 -3.7646 -3.2823 18 6 0.1641 -4.8727 -4.2393 19 6 -0.3897 -4.5772 -5.6346 20 6 -1.2151 -5.3989 -4.6413 21 1 -0.4850 0.8401 0.0004 22 1 3.2383 -3.3809 -0.4352 23 1 2.2740 -4.1257 0.8829 24 1 0.9498 -5.3652 -0.6187 25 1 2.3861 -5.1988 -1.6738 26 1 0.9760 -5.5959 -4.1628 27 1 -0.7174 -3.5582 -5.8406 28 1 0.0576 -5.1064 -6.4761 29 1 -1.3106 -6.4682 -4.8297 30 1 -2.0864 -4.9203 -4.1941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:53 Heat of formation + Delta-G solvation = 113.851413 kcal Electronic energy + Delta-G solvation = -14684.789473 eV Core-core repulsion = 12289.695899 eV Total energy + Delta-G solvation = -2395.093574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.01741 -38.61381 -37.55222 -34.49799 -33.22526 -29.96656 -29.24255 -25.64103 -25.15242 -23.48654 -22.65208 -21.65535 -20.34932 -18.59247 -17.98446 -17.21030 -16.40152 -15.76283 -15.35550 -14.74684 -14.54443 -14.00005 -13.81970 -13.58702 -13.26716 -12.80899 -12.56138 -12.43666 -12.35763 -12.25059 -11.73315 -11.66015 -11.53563 -11.10963 -10.96279 -10.46659 -10.30445 -9.38845 -8.05107 -6.15688 0.80424 1.38233 1.41974 1.50038 1.51043 2.01890 2.47267 2.68012 3.21562 3.31035 3.45350 3.76437 3.86968 4.00115 4.37563 4.42794 4.50590 4.64112 4.80766 4.87507 4.90977 5.07001 5.11588 5.16976 5.30456 5.47225 5.64368 5.77715 5.90188 6.07553 6.31146 6.92866 7.52158 7.94334 9.02754 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.009035 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.672965 B = 3098.310239 C = 3516.494063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.292 1.292 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.102 3.898 10 H 0.017 0.983 11 C -0.097 4.097 12 C -0.010 4.010 13 C -0.085 4.085 14 C 0.000 4.000 15 N -0.288 5.288 16 N -0.145 5.145 17 N -0.250 5.250 18 C 0.030 3.970 19 C -0.155 4.155 20 C -0.155 4.155 21 H 0.255 0.745 22 H 0.070 0.930 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.183 0.817 27 H 0.083 0.917 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -15.450 -7.306 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.180 4.180 3 Si 0.771 3.229 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.082 3.918 10 H 0.035 0.965 11 C -0.136 4.136 12 C -0.050 4.050 13 C -0.219 4.219 14 C -0.141 4.141 15 N -0.151 5.151 16 N -0.122 5.122 17 N -0.044 5.044 18 C -0.072 4.072 19 C -0.193 4.193 20 C -0.193 4.193 21 H 0.064 0.936 22 H 0.089 0.911 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.200 0.800 27 H 0.102 0.898 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.719 -14.394 -8.296 16.702 hybrid contribution 0.376 1.049 0.516 1.228 sum 2.095 -13.345 -7.779 15.588 Atomic orbital electron populations 1.70111 1.07357 1.26695 1.48627 1.25726 0.95390 1.02343 0.94571 0.85764 0.79548 0.80344 0.77281 1.21887 1.20854 1.18028 1.21390 0.93552 0.91560 1.51349 0.91958 1.17915 0.92959 0.95131 0.85806 0.96527 1.22461 0.98165 0.93481 0.99482 1.20605 0.97101 0.95189 0.92074 1.23388 1.07195 1.02175 0.89093 1.23718 0.99020 0.90638 1.00681 1.74640 1.16055 1.25574 0.98863 1.78255 1.21707 0.90775 1.21437 1.46259 1.34843 1.10806 1.12445 1.22795 1.02804 0.89927 0.91687 1.23445 1.01909 1.02226 0.91673 1.23537 0.91856 1.02806 1.01139 0.93634 0.91132 0.88412 0.88066 0.87726 0.80003 0.89809 0.83174 0.82859 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.57 12.70 21.45 0.27 -56.30 16 2 C 0.02 1.29 5.28 84.65 0.45 1.74 16 3 Si 0.94 46.91 29.54 68.60 2.03 48.94 16 4 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 5 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -30.89 8.50 25.60 0.22 -30.67 16 8 H 0.06 3.39 7.61 -2.91 -0.02 3.37 16 9 C 0.10 5.27 2.71 -11.65 -0.03 5.24 16 10 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 11 C -0.10 -3.53 6.63 31.62 0.21 -3.32 16 12 C -0.01 -0.31 6.78 30.48 0.21 -0.11 16 13 C -0.09 -3.53 7.67 41.40 0.32 -3.21 16 14 C 0.00 0.01 6.79 41.65 0.28 0.29 16 15 N -0.29 -16.73 12.22 -48.40 -0.59 -17.32 16 16 N -0.15 -7.15 12.53 37.02 0.46 -6.68 16 17 N -0.25 -9.84 3.67 -313.84 -1.15 -11.00 16 18 C 0.03 0.73 6.88 44.99 0.31 1.04 16 19 C -0.16 -3.18 10.14 30.62 0.31 -2.86 16 20 C -0.16 -3.03 10.46 30.62 0.32 -2.71 16 21 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 22 H 0.07 2.52 7.77 -2.39 -0.02 2.50 16 23 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.18 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.08 2.27 7.82 -2.39 -0.02 2.25 16 28 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -79.97 260.47 4.75 -75.22 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.14 Total: 1.73 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 2.59 Total: -34.59 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -1.01 Total: -91.30 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.97 4.75 -75.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.073 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds