Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46749 * 110.99882 * 2 1 4 4 C 1.53412 * 108.60423 * 285.47679 * 3 2 1 5 5 O 1.43112 * 107.93887 * 296.57573 * 4 3 2 6 6 C 1.35959 * 116.70060 * 45.56598 * 5 4 3 7 7 C 1.39434 * 118.55094 * 165.26391 * 6 5 4 8 8 C 1.36343 * 120.63740 * 179.97438 * 7 6 5 9 9 C 1.40871 * 119.92003 * 359.41463 * 8 7 6 10 10 C 1.41203 * 120.18728 * 180.48001 * 9 8 7 11 11 H 1.07994 * 120.00417 * 330.18819 * 10 9 8 12 12 C 1.39869 * 120.00129 * 150.18619 * 10 9 8 13 13 N 1.30890 * 119.99897 * 161.69036 * 12 10 9 14 14 Si 1.86797 * 119.99729 * 341.69243 * 12 10 9 15 15 H 1.48508 * 109.47209 * 95.40753 * 14 12 10 16 16 H 1.48496 * 109.47078 * 215.40767 * 14 12 10 17 17 H 1.48506 * 109.47489 * 335.40794 * 14 12 10 18 18 C 1.40596 * 119.62764 * 0.50514 * 9 8 7 19 19 C 1.38407 * 119.91323 * 359.80076 * 18 9 8 20 20 H 1.08993 * 109.47434 * 185.39396 * 1 2 3 21 21 H 1.09000 * 109.47274 * 305.39893 * 1 2 3 22 22 H 1.09005 * 109.47151 * 65.39547 * 1 2 3 23 23 H 1.08996 * 109.61850 * 45.21538 * 3 2 1 24 24 H 1.08998 * 109.61317 * 165.74267 * 3 2 1 25 25 H 1.08996 * 109.76781 * 56.18754 * 4 3 2 26 26 H 1.09001 * 109.76936 * 176.96570 * 4 3 2 27 27 H 1.07996 * 119.68301 * 359.67031 * 7 6 5 28 28 H 1.08006 * 120.04537 * 179.69182 * 8 7 6 29 29 H 0.97005 * 119.99548 * 180.02562 * 13 12 10 30 30 H 1.07995 * 120.04415 * 179.78905 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8080 1.9660 -1.4012 5 8 2.5947 1.1963 -2.3161 6 6 2.5164 -0.1561 -2.2011 7 6 3.0035 -0.9429 -3.2442 8 6 2.9469 -2.3033 -3.1733 9 6 2.4032 -2.9255 -2.0324 10 6 2.3510 -4.3340 -1.9487 11 1 2.2554 -4.9252 -2.8474 12 6 2.4232 -4.9637 -0.7019 13 7 2.0243 -6.2034 -0.5707 14 14 3.0888 -4.0354 0.7761 15 1 1.9596 -3.4502 1.5428 16 1 3.8470 -4.9692 1.6468 17 1 3.9890 -2.9485 0.3138 18 6 1.9123 -2.1360 -0.9776 19 6 1.9695 -0.7558 -1.0640 20 1 -0.3634 -1.0230 0.0966 21 1 -0.3634 0.5953 0.8377 22 1 -0.3634 0.4279 -0.9344 23 1 1.4508 1.9709 0.7287 24 1 3.0550 1.3550 0.2529 25 1 0.7571 1.9159 -1.6860 26 1 2.1436 3.0030 -1.4085 27 1 3.4253 -0.4701 -4.1187 28 1 3.3225 -2.9034 -3.9890 29 1 2.0740 -6.6400 0.2941 30 1 1.4910 -2.6058 -0.1013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262290.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = -7.911900 kcal Electronic energy + Delta-G solvation = -14937.452612 eV Core-core repulsion = 12504.786233 eV Total energy + Delta-G solvation = -2432.666378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16710 -36.68339 -35.76438 -33.37625 -30.36393 -29.69395 -28.19591 -25.71618 -24.26523 -22.79270 -21.44813 -19.17065 -17.51446 -17.08209 -16.08019 -15.62978 -14.76513 -14.44223 -14.05633 -13.80938 -13.29250 -12.98770 -12.83979 -12.44265 -12.01294 -11.75456 -11.64266 -11.29967 -10.90070 -10.74993 -10.42085 -10.09086 -9.92032 -9.74718 -9.05169 -8.54194 -7.38574 -7.09231 -6.90783 -4.40300 2.45778 2.61743 3.20350 3.25558 3.40978 4.05257 4.07338 4.23047 4.45854 5.01113 5.23696 5.26645 5.38580 5.56731 5.65067 5.73853 5.88189 6.03679 6.14325 6.36371 6.50314 6.58844 6.85078 7.01965 7.18534 7.30243 7.55873 7.60445 7.89591 7.94241 8.28564 8.43389 8.68118 8.83236 10.11492 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035557 B = 0.011524 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.269127 B = 2429.166341 C = 2879.274821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.496 5.496 3 C 0.019 3.981 4 C 0.027 3.973 5 O -0.321 6.321 6 C -0.044 4.044 7 C -0.089 4.089 8 C -0.184 4.184 9 C 0.083 3.917 10 C -0.447 4.447 11 H 0.091 0.909 12 C 0.085 3.915 13 N -0.811 5.811 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.293 1.293 17 H -0.245 1.245 18 C -0.211 4.211 19 C 0.070 3.930 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.028 0.972 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.284 0.716 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 10.834 2.023 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.213 5.213 3 C -0.109 4.109 4 C -0.051 4.051 5 O -0.237 6.237 6 C -0.090 4.090 7 C -0.108 4.108 8 C -0.203 4.203 9 C 0.079 3.921 10 C -0.476 4.476 11 H 0.109 0.891 12 C -0.134 4.134 13 N -0.436 5.436 14 Si 0.736 3.264 15 H -0.194 1.194 16 H -0.221 1.221 17 H -0.168 1.168 18 C -0.232 4.232 19 C -0.026 4.026 20 H 0.094 0.906 21 H 0.084 0.916 22 H 0.047 0.953 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.254 10.456 2.465 10.816 hybrid contribution -0.179 0.621 0.308 0.715 sum -1.433 11.077 2.773 11.508 Atomic orbital electron populations 1.22488 0.86260 1.03089 0.99891 1.59264 1.07935 1.11874 1.42267 1.22850 1.02199 0.89215 0.96644 1.23232 0.95405 0.95523 0.90949 1.86095 1.65253 1.15866 1.56471 1.18584 1.13287 0.81256 0.95854 1.19748 1.01905 0.93208 0.95955 1.20657 1.06337 0.92616 1.00703 1.17589 0.89750 0.93645 0.91090 1.19355 1.43195 0.90221 0.94809 0.89079 1.26127 0.91963 0.94886 1.00390 1.69730 1.33948 1.12931 1.26982 0.86321 0.80630 0.79549 0.79863 1.19431 1.22068 1.16777 1.20685 1.10340 0.90518 1.01612 1.18384 1.02934 0.93094 0.88148 0.90595 0.91611 0.95317 0.89681 0.89532 0.92967 0.88497 0.87772 0.87256 0.90553 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.19 60.06 0.55 1.02 16 2 N -0.50 -9.62 4.85 -178.70 -0.87 -10.49 16 3 C 0.02 0.30 6.02 -3.69 -0.02 0.28 16 4 C 0.03 0.42 7.05 37.37 0.26 0.68 16 5 O -0.32 -6.47 10.39 -19.61 -0.20 -6.68 16 6 C -0.04 -0.99 6.51 -38.59 -0.25 -1.25 16 7 C -0.09 -1.97 9.86 -39.82 -0.39 -2.37 16 8 C -0.18 -4.30 9.74 -39.27 -0.38 -4.68 16 9 C 0.08 2.12 5.10 -106.89 -0.54 1.58 16 10 C -0.45 -12.13 9.55 -37.85 -0.36 -12.49 16 11 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 12 C 0.08 2.25 5.40 -17.34 -0.09 2.16 16 13 N -0.81 -21.83 13.93 55.54 0.77 -21.06 16 14 Si 0.91 21.61 24.52 -169.99 -4.17 17.44 16 15 H -0.27 -6.28 6.71 56.52 0.38 -5.90 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.24 -6.06 6.87 56.52 0.39 -5.68 16 18 C -0.21 -5.22 6.57 -38.63 -0.25 -5.48 16 19 C 0.07 1.59 5.12 -83.62 -0.43 1.16 16 20 H 0.08 1.31 7.85 -51.93 -0.41 0.91 16 21 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 22 H 0.03 0.45 6.89 -51.93 -0.36 0.10 16 23 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 24 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.05 0.79 6.80 -51.93 -0.35 0.43 16 26 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 30 H 0.11 2.75 4.74 -52.49 -0.25 2.50 16 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -29.13 245.39 -6.16 -35.28 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.48 Total: 1.19 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.91 Total: -19.39 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: -0.09 Total: -31.55 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.20 Total: -6.68 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.17 Total: 17.44 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.13 -6.16 -35.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262290.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.373 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds