Wall clock time and date at job start Mon Mar 30 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46749 * 110.99882 * 2 1 4 4 C 1.53412 * 108.60423 * 285.47679 * 3 2 1 5 5 O 1.43112 * 107.93887 * 296.57573 * 4 3 2 6 6 C 1.35959 * 116.70060 * 45.56598 * 5 4 3 7 7 C 1.39434 * 118.55094 * 165.26391 * 6 5 4 8 8 C 1.36343 * 120.63740 * 179.97438 * 7 6 5 9 9 C 1.40871 * 119.92003 * 359.41463 * 8 7 6 10 10 C 1.41203 * 120.18728 * 180.48001 * 9 8 7 11 11 H 1.07994 * 120.00417 * 330.18819 * 10 9 8 12 12 C 1.39869 * 120.00129 * 150.18619 * 10 9 8 13 13 N 1.30890 * 119.99897 * 161.69036 * 12 10 9 14 14 Si 1.86797 * 119.99729 * 341.69243 * 12 10 9 15 15 H 1.48508 * 109.47209 * 95.40753 * 14 12 10 16 16 H 1.48496 * 109.47078 * 215.40767 * 14 12 10 17 17 H 1.48506 * 109.47489 * 335.40794 * 14 12 10 18 18 C 1.40596 * 119.62764 * 0.50514 * 9 8 7 19 19 C 1.38407 * 119.91323 * 359.80076 * 18 9 8 20 20 H 1.08993 * 109.47434 * 185.39396 * 1 2 3 21 21 H 1.09000 * 109.47274 * 305.39893 * 1 2 3 22 22 H 1.09005 * 109.47151 * 65.39547 * 1 2 3 23 23 H 1.08996 * 109.61850 * 45.21538 * 3 2 1 24 24 H 1.08998 * 109.61317 * 165.74267 * 3 2 1 25 25 H 1.08996 * 109.76781 * 56.18754 * 4 3 2 26 26 H 1.09001 * 109.76936 * 176.96570 * 4 3 2 27 27 H 1.07996 * 119.68301 * 359.67031 * 7 6 5 28 28 H 1.08006 * 120.04537 * 179.69182 * 8 7 6 29 29 H 0.97005 * 119.99548 * 180.02562 * 13 12 10 30 30 H 1.07995 * 120.04415 * 179.78905 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8080 1.9660 -1.4012 5 8 2.5947 1.1963 -2.3161 6 6 2.5164 -0.1561 -2.2011 7 6 3.0035 -0.9429 -3.2442 8 6 2.9469 -2.3033 -3.1733 9 6 2.4032 -2.9255 -2.0324 10 6 2.3510 -4.3340 -1.9487 11 1 2.2554 -4.9252 -2.8474 12 6 2.4232 -4.9637 -0.7019 13 7 2.0243 -6.2034 -0.5707 14 14 3.0888 -4.0354 0.7761 15 1 1.9596 -3.4502 1.5428 16 1 3.8470 -4.9692 1.6468 17 1 3.9890 -2.9485 0.3138 18 6 1.9123 -2.1360 -0.9776 19 6 1.9695 -0.7558 -1.0640 20 1 -0.3634 -1.0230 0.0966 21 1 -0.3634 0.5953 0.8377 22 1 -0.3634 0.4279 -0.9344 23 1 1.4508 1.9709 0.7287 24 1 3.0550 1.3550 0.2529 25 1 0.7571 1.9159 -1.6860 26 1 2.1436 3.0030 -1.4085 27 1 3.4253 -0.4701 -4.1187 28 1 3.3225 -2.9034 -3.9890 29 1 2.0740 -6.6400 0.2941 30 1 1.4910 -2.6058 -0.1013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262290.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:36 Heat of formation + Delta-G solvation = -27.877072 kcal Electronic energy + Delta-G solvation = -14938.318366 eV Core-core repulsion = 12504.786233 eV Total energy + Delta-G solvation = -2433.532133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.73204 -38.44009 -37.27140 -35.30674 -32.08299 -31.39429 -29.64568 -27.36837 -25.87441 -24.33187 -23.25489 -20.79233 -19.36045 -18.71907 -17.70260 -17.20961 -16.54679 -15.92437 -15.53320 -15.34162 -15.00961 -14.71759 -14.53500 -14.21717 -13.48018 -13.44149 -12.99916 -12.88917 -12.66251 -12.35386 -12.11126 -11.91087 -11.65632 -11.56435 -10.96769 -10.13422 -9.16218 -8.89402 -8.79475 -6.42282 0.64910 0.75482 1.28492 1.36242 1.48668 2.13143 2.50481 2.63078 2.83948 3.43504 3.76037 4.06239 4.07423 4.16502 4.39558 4.48344 4.53316 4.65724 4.75147 4.78513 4.82819 4.90735 5.08454 5.21937 5.46915 5.56129 5.76898 5.93389 6.08868 6.17190 6.35426 6.58694 6.80755 6.89747 8.19226 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035557 B = 0.011524 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.269127 B = 2429.166341 C = 2879.274821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.515 5.515 3 C 0.017 3.983 4 C 0.020 3.980 5 O -0.331 6.331 6 C -0.033 4.033 7 C -0.094 4.094 8 C -0.190 4.190 9 C 0.062 3.938 10 C -0.480 4.480 11 H 0.063 0.937 12 C 0.053 3.947 13 N -0.849 5.849 14 Si 0.962 3.038 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.222 4.222 19 C 0.066 3.934 20 H 0.056 0.944 21 H 0.105 0.895 22 H 0.033 0.967 23 H 0.129 0.871 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.293 0.707 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 14.119 2.930 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.233 5.233 3 C -0.110 4.110 4 C -0.056 4.056 5 O -0.247 6.247 6 C -0.080 4.080 7 C -0.113 4.113 8 C -0.209 4.209 9 C 0.059 3.941 10 C -0.510 4.510 11 H 0.081 0.919 12 C -0.161 4.161 13 N -0.476 5.476 14 Si 0.787 3.213 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.243 4.243 19 C -0.031 4.031 20 H 0.075 0.925 21 H 0.123 0.877 22 H 0.051 0.949 23 H 0.147 0.853 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.137 0.863 29 H 0.103 0.897 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.407 13.760 3.379 14.239 hybrid contribution -0.167 -0.105 -0.038 0.201 sum -1.574 13.655 3.341 14.146 Atomic orbital electron populations 1.22545 0.84357 1.02861 1.01807 1.59201 1.09601 1.13859 1.40606 1.23036 1.02332 0.87637 0.97986 1.23652 0.95603 0.96703 0.89673 1.86084 1.66226 1.14448 1.57917 1.18810 1.11160 0.82762 0.95235 1.20062 1.01436 0.92723 0.97069 1.20842 1.06113 0.93616 1.00341 1.17731 0.90642 0.93195 0.92504 1.19340 1.46179 0.91103 0.94356 0.91863 1.26649 0.91975 0.95455 1.02025 1.69746 1.35827 1.13966 1.28059 0.85521 0.79829 0.78194 0.77719 1.18931 1.20428 1.18653 1.20701 1.10731 0.91744 1.01122 1.18529 1.02539 0.92790 0.89193 0.92505 0.87678 0.94860 0.85345 0.90362 0.92102 0.84334 0.85022 0.86294 0.89698 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.19 127.69 1.17 2.05 16 2 N -0.51 -18.41 4.85 -719.27 -3.49 -21.90 16 3 C 0.02 0.46 6.02 86.47 0.52 0.98 16 4 C 0.02 0.53 7.05 72.12 0.51 1.03 16 5 O -0.33 -12.10 10.39 -93.09 -0.97 -13.06 16 6 C -0.03 -1.42 6.51 22.91 0.15 -1.27 16 7 C -0.09 -4.01 9.86 22.12 0.22 -3.79 16 8 C -0.19 -8.90 9.74 22.47 0.22 -8.68 16 9 C 0.06 3.26 5.10 -21.33 -0.11 3.16 16 10 C -0.48 -27.29 9.55 23.39 0.22 -27.06 16 11 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 12 C 0.05 2.93 5.40 85.23 0.46 3.39 16 13 N -0.85 -47.32 13.93 21.82 0.30 -47.01 16 14 Si 0.96 45.41 24.52 68.60 1.68 47.10 16 15 H -0.26 -12.06 6.71 99.48 0.67 -11.40 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.26 -12.97 6.87 99.48 0.68 -12.29 16 18 C -0.22 -11.02 6.57 22.89 0.15 -10.87 16 19 C 0.07 2.87 5.12 38.27 0.20 3.07 16 20 H 0.06 1.88 7.85 -2.39 -0.02 1.86 16 21 H 0.10 2.25 7.98 -2.39 -0.02 2.23 16 22 H 0.03 0.94 6.89 -2.38 -0.02 0.93 16 23 H 0.13 2.35 7.91 -2.39 -0.02 2.33 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 1.53 6.80 -2.39 -0.02 1.51 16 26 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 28 H 0.12 5.21 8.06 -2.91 -0.02 5.18 16 29 H 0.29 14.70 8.30 -92.70 -0.77 13.93 16 30 H 0.10 5.05 4.74 -2.91 -0.01 5.04 16 Total: -1.00 -64.09 245.39 2.31 -61.77 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.08 Total: 11.10 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.71 Total: -37.99 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -3.19 Total: -68.91 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.97 Total: -13.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.68 Total: 47.10 kcal Total: -64.09 2.31 -61.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262290.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.897 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds