Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00298 * 2 1 4 4 H 1.48494 * 109.47295 * 264.87241 * 3 2 1 5 5 H 1.48498 * 109.46955 * 24.87282 * 3 2 1 6 6 H 1.48501 * 109.47167 * 144.87255 * 3 2 1 7 7 C 1.37882 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00250 * 4.80327 * 7 2 1 9 9 C 1.50705 * 119.99672 * 184.79272 * 7 2 1 10 10 H 1.09000 * 109.47183 * 334.91738 * 9 7 2 11 11 N 1.46897 * 109.47103 * 94.91882 * 9 7 2 12 12 C 1.50701 * 109.47042 * 214.91600 * 9 7 2 13 13 C 1.38599 * 120.80287 * 279.72615 * 12 9 7 14 14 N 1.32330 * 119.10721 * 179.71583 * 13 12 9 15 15 C 1.31791 * 120.81592 * 0.57093 * 14 13 12 16 16 C 1.50697 * 119.12176 * 179.72656 * 15 14 13 17 17 C 1.53004 * 117.50200 * 8.59664 * 16 15 14 18 18 C 1.53001 * 117.49864 * 299.97311 * 16 15 14 19 19 N 1.31798 * 121.75770 * 359.69924 * 15 14 13 20 20 C 1.32335 * 120.81703 * 0.02562 * 19 15 14 21 21 H 0.96998 * 119.99725 * 0.02562 * 1 2 3 22 22 H 1.00905 * 110.99907 * 293.91009 * 11 9 7 23 23 H 1.00904 * 111.00287 * 57.85718 * 11 9 7 24 24 H 1.08008 * 120.44099 * 359.97438 * 13 12 9 25 25 H 1.09008 * 115.55313 * 154.30463 * 16 15 14 26 26 H 1.09004 * 117.49323 * 359.97438 * 17 16 15 27 27 H 1.08998 * 117.49964 * 145.02236 * 17 16 15 28 28 H 1.09005 * 117.49709 * 214.98004 * 18 16 15 29 29 H 1.08997 * 117.50167 * 359.97438 * 18 16 15 30 30 H 1.07993 * 120.44960 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6051 1.9838 -1.3944 5 1 1.3967 2.6815 0.5889 6 1 3.4884 1.4738 0.8056 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1278 -0.0774 9 6 3.5076 -1.1964 0.1096 10 1 3.9001 -0.2490 -0.2598 11 7 3.8963 -1.3728 1.5152 12 6 4.0692 -2.3276 -0.7126 13 6 4.0788 -3.6242 -0.2230 14 7 4.5749 -4.5928 -0.9758 15 6 5.0655 -4.3347 -2.1715 16 6 5.6266 -5.4660 -2.9939 17 6 5.4132 -6.8897 -2.4757 18 6 6.8017 -6.2507 -2.4073 19 7 5.0780 -3.1136 -2.6673 20 6 4.5941 -2.0955 -1.9742 21 1 -0.4850 0.8401 -0.0004 22 1 3.6171 -0.5776 2.0701 23 1 3.5148 -2.2279 1.8913 24 1 3.6828 -3.8416 0.7580 25 1 5.6108 -5.3154 -4.0734 26 1 4.8673 -7.0080 -1.5397 27 1 5.2569 -7.6759 -3.2143 28 1 7.5589 -6.6166 -3.1008 29 1 7.1693 -5.9485 -1.4267 30 1 4.6069 -1.0974 -2.3865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = 66.987659 kcal Electronic energy + Delta-G solvation = -14199.532863 eV Core-core repulsion = 11802.407125 eV Total energy + Delta-G solvation = -2397.125739 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.57569 -37.02972 -35.17656 -33.09063 -32.17662 -30.22875 -26.61201 -24.67013 -24.02665 -22.24952 -21.43795 -20.15386 -17.65927 -16.92401 -16.52051 -15.40811 -14.87373 -14.41739 -14.16329 -13.79089 -13.23641 -13.03565 -12.77543 -12.08880 -11.82466 -11.68345 -11.40350 -11.11964 -10.64062 -10.54019 -10.33060 -10.20650 -10.02904 -9.66571 -8.92883 -8.65394 -8.51837 -7.63506 -6.36303 -4.42025 1.54027 1.67710 3.10587 3.19902 3.21002 3.82195 4.15425 4.19339 4.43739 4.65744 4.97826 5.00962 5.18304 5.25573 5.33247 5.45381 5.67041 5.70240 5.82330 5.98707 6.13932 6.16402 6.30462 6.43288 6.83036 7.01582 7.28886 7.56810 8.04257 8.15292 8.38637 8.64791 8.67872 9.22942 10.75694 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.052244 B = 0.007034 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.813271 B = 3979.507857 C = 4020.565382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.217 3.783 10 H 0.056 0.944 11 N -0.852 5.852 12 C -0.120 4.120 13 C 0.149 3.851 14 N -0.517 5.517 15 C 0.308 3.692 16 C -0.090 4.090 17 C -0.157 4.157 18 C -0.161 4.161 19 N -0.515 5.515 20 C 0.135 3.865 21 H 0.269 0.731 22 H 0.334 0.666 23 H 0.327 0.673 24 H 0.161 0.839 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.745 -6.733 -2.398 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.590 4.590 8 H 0.093 0.907 9 C 0.107 3.893 10 H 0.074 0.926 11 N -0.381 5.381 12 C -0.125 4.125 13 C -0.017 4.017 14 N -0.231 5.231 15 C 0.041 3.959 16 C -0.110 4.110 17 C -0.195 4.195 18 C -0.199 4.199 19 N -0.228 5.228 20 C -0.031 4.031 21 H 0.079 0.921 22 H 0.145 0.855 23 H 0.138 0.862 24 H 0.179 0.821 25 H 0.140 0.860 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.689 -7.354 -3.224 13.368 hybrid contribution -1.302 1.854 0.602 2.344 sum 9.386 -5.499 -2.622 11.190 Atomic orbital electron populations 1.69897 1.06423 1.27583 1.48059 1.25102 0.94801 0.99185 0.93471 0.86884 0.80349 0.83342 0.79361 1.19691 1.21089 1.18395 1.21561 0.89235 0.95155 1.53096 0.90749 1.18271 0.93790 0.91271 0.85984 0.92627 1.59605 1.66611 1.07321 1.04518 1.21908 0.95464 0.98226 0.96873 1.22836 0.92336 0.87968 0.98523 1.67964 1.11552 1.37133 1.06440 1.21794 0.94274 0.90641 0.89213 1.20483 1.03437 0.89144 0.97921 1.22981 0.99170 0.93547 1.03780 1.22939 0.91389 1.03094 1.02512 1.67985 1.17769 1.00075 1.36985 1.22948 0.91501 0.97902 0.90743 0.92131 0.85455 0.86183 0.82137 0.85968 0.87268 0.88629 0.88437 0.88740 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.38 13.96 55.43 0.77 -24.61 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 19.67 26.99 -169.99 -4.59 15.09 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.52 6.82 56.52 0.39 -5.14 16 7 C -0.55 -14.24 9.12 -34.44 -0.31 -14.56 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.22 4.74 2.66 -70.02 -0.19 4.55 16 10 H 0.06 1.23 5.20 -51.93 -0.27 0.96 16 11 N -0.85 -16.66 9.02 -6.65 -0.06 -16.72 16 12 C -0.12 -2.47 4.96 -104.35 -0.52 -2.99 16 13 C 0.15 2.90 10.59 -17.20 -0.18 2.72 16 14 N -0.52 -9.77 9.35 -10.72 -0.10 -9.87 16 15 C 0.31 5.68 7.31 -157.20 -1.15 4.53 16 16 C -0.09 -1.30 6.24 -91.77 -0.57 -1.87 16 17 C -0.16 -1.92 10.01 -26.73 -0.27 -2.18 16 18 C -0.16 -1.92 10.23 -26.73 -0.27 -2.20 16 19 N -0.52 -10.00 10.33 -10.73 -0.11 -10.11 16 20 C 0.13 2.66 10.98 -17.20 -0.19 2.47 16 21 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.33 6.46 9.07 -39.29 -0.36 6.10 16 23 H 0.33 6.00 7.50 -39.29 -0.29 5.70 16 24 H 0.16 2.85 6.82 -52.48 -0.36 2.49 16 25 H 0.12 1.62 8.14 -51.92 -0.42 1.20 16 26 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -28.98 261.38 -7.25 -36.24 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.36 Total: 13.54 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.75 Total: -7.49 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.50 Total: -61.31 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.59 Total: 15.09 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.98 -7.25 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.226 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds