Wall clock time and date at job start Mon Mar 30 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00298 * 2 1 4 4 H 1.48494 * 109.47295 * 264.87241 * 3 2 1 5 5 H 1.48498 * 109.46955 * 24.87282 * 3 2 1 6 6 H 1.48501 * 109.47167 * 144.87255 * 3 2 1 7 7 C 1.37882 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00250 * 4.80327 * 7 2 1 9 9 C 1.50705 * 119.99672 * 184.79272 * 7 2 1 10 10 H 1.09000 * 109.47183 * 334.91738 * 9 7 2 11 11 N 1.46897 * 109.47103 * 94.91882 * 9 7 2 12 12 C 1.50701 * 109.47042 * 214.91600 * 9 7 2 13 13 C 1.38599 * 120.80287 * 279.72615 * 12 9 7 14 14 N 1.32330 * 119.10721 * 179.71583 * 13 12 9 15 15 C 1.31791 * 120.81592 * 0.57093 * 14 13 12 16 16 C 1.50697 * 119.12176 * 179.72656 * 15 14 13 17 17 C 1.53004 * 117.50200 * 8.59664 * 16 15 14 18 18 C 1.53001 * 117.49864 * 299.97311 * 16 15 14 19 19 N 1.31798 * 121.75770 * 359.69924 * 15 14 13 20 20 C 1.32335 * 120.81703 * 0.02562 * 19 15 14 21 21 H 0.96998 * 119.99725 * 0.02562 * 1 2 3 22 22 H 1.00905 * 110.99907 * 293.91009 * 11 9 7 23 23 H 1.00904 * 111.00287 * 57.85718 * 11 9 7 24 24 H 1.08008 * 120.44099 * 359.97438 * 13 12 9 25 25 H 1.09008 * 115.55313 * 154.30463 * 16 15 14 26 26 H 1.09004 * 117.49323 * 359.97438 * 17 16 15 27 27 H 1.08998 * 117.49964 * 145.02236 * 17 16 15 28 28 H 1.09005 * 117.49709 * 214.98004 * 18 16 15 29 29 H 1.08997 * 117.50167 * 359.97438 * 18 16 15 30 30 H 1.07993 * 120.44960 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6051 1.9838 -1.3944 5 1 1.3967 2.6815 0.5889 6 1 3.4884 1.4738 0.8056 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1278 -0.0774 9 6 3.5076 -1.1964 0.1096 10 1 3.9001 -0.2490 -0.2598 11 7 3.8963 -1.3728 1.5152 12 6 4.0692 -2.3276 -0.7126 13 6 4.0788 -3.6242 -0.2230 14 7 4.5749 -4.5928 -0.9758 15 6 5.0655 -4.3347 -2.1715 16 6 5.6266 -5.4660 -2.9939 17 6 5.4132 -6.8897 -2.4757 18 6 6.8017 -6.2507 -2.4073 19 7 5.0780 -3.1136 -2.6673 20 6 4.5941 -2.0955 -1.9742 21 1 -0.4850 0.8401 -0.0004 22 1 3.6171 -0.5776 2.0701 23 1 3.5148 -2.2279 1.8913 24 1 3.6828 -3.8416 0.7580 25 1 5.6108 -5.3154 -4.0734 26 1 4.8673 -7.0080 -1.5397 27 1 5.2569 -7.6759 -3.2143 28 1 7.5589 -6.6166 -3.1008 29 1 7.1693 -5.9485 -1.4267 30 1 4.6069 -1.0974 -2.3865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:49 Heat of formation + Delta-G solvation = 46.711273 kcal Electronic energy + Delta-G solvation = -14200.412113 eV Core-core repulsion = 11802.407125 eV Total energy + Delta-G solvation = -2398.004989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.04628 -38.21385 -36.79499 -34.60028 -34.12357 -31.75221 -28.42311 -26.20771 -25.55814 -23.19615 -22.90041 -21.67665 -19.46474 -18.51349 -17.92315 -17.02086 -16.40347 -15.91104 -15.59045 -15.06620 -14.87891 -14.74157 -14.39458 -13.70963 -13.58000 -13.02790 -12.88539 -12.37119 -12.22761 -11.87772 -11.72149 -11.70840 -11.45301 -11.31558 -10.89357 -10.16121 -10.04025 -9.33177 -8.40523 -6.50753 0.04266 0.14970 1.34457 1.36722 1.46279 2.26191 2.61888 2.91586 2.95847 3.09872 3.32716 3.80424 3.85134 3.97270 4.09572 4.15161 4.17937 4.43420 4.58429 4.78840 4.80848 4.99293 5.14394 5.24377 5.35383 5.36346 5.51933 6.02660 6.08949 6.43531 6.55731 6.79122 7.15669 7.18905 8.75298 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.052244 B = 0.007034 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.813271 B = 3979.507857 C = 4020.565382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.549 4.549 8 H 0.028 0.972 9 C 0.228 3.772 10 H 0.059 0.941 11 N -0.841 5.841 12 C -0.146 4.146 13 C 0.147 3.853 14 N -0.523 5.523 15 C 0.304 3.696 16 C -0.118 4.118 17 C -0.147 4.147 18 C -0.142 4.142 19 N -0.526 5.526 20 C 0.131 3.869 21 H 0.270 0.730 22 H 0.337 0.663 23 H 0.334 0.666 24 H 0.171 0.829 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 -7.002 -2.900 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.589 4.589 8 H 0.047 0.953 9 C 0.117 3.883 10 H 0.077 0.923 11 N -0.369 5.369 12 C -0.150 4.150 13 C -0.019 4.019 14 N -0.237 5.237 15 C 0.037 3.963 16 C -0.138 4.138 17 C -0.184 4.184 18 C -0.180 4.180 19 N -0.239 5.239 20 C -0.035 4.035 21 H 0.079 0.921 22 H 0.149 0.851 23 H 0.146 0.854 24 H 0.188 0.812 25 H 0.153 0.847 26 H 0.111 0.889 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.101 0.899 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.880 -7.646 -3.714 15.432 hybrid contribution -1.970 1.770 0.739 2.750 sum 10.910 -5.876 -2.975 12.744 Atomic orbital electron populations 1.70051 1.08484 1.28593 1.50386 1.25969 0.95429 1.03122 0.93062 0.85817 0.79619 0.78200 0.79948 1.18955 1.21367 1.15892 1.21721 0.91554 0.93305 1.52284 0.95340 1.18062 0.90930 0.92102 0.87234 0.92277 1.59531 1.66035 1.07855 1.03465 1.21847 0.97463 0.98241 0.97481 1.23061 0.91852 0.87932 0.99089 1.68082 1.12002 1.36713 1.06869 1.22681 0.92862 0.91510 0.89231 1.20716 1.05925 0.88989 0.98142 1.23060 0.99095 0.92685 1.03578 1.23036 0.91563 1.01110 1.02315 1.68107 1.18335 1.00436 1.37011 1.23287 0.90826 0.98947 0.90423 0.92134 0.85084 0.85445 0.81191 0.84718 0.88927 0.85696 0.85263 0.89927 0.80521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.25 13.96 21.45 0.30 -54.95 16 2 C 0.02 1.32 5.47 84.66 0.46 1.78 16 3 Si 0.94 40.08 26.99 68.60 1.85 41.93 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.24 -9.06 6.82 99.48 0.68 -8.38 16 7 C -0.55 -28.85 9.12 25.60 0.23 -28.61 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.23 9.76 2.66 43.43 0.12 9.88 16 10 H 0.06 2.49 5.20 -2.39 -0.01 2.48 16 11 N -0.84 -31.75 9.02 -174.95 -1.58 -33.33 16 12 C -0.15 -5.92 4.96 -19.69 -0.10 -6.02 16 13 C 0.15 5.65 10.59 84.70 0.90 6.55 16 14 N -0.52 -19.41 9.35 -187.84 -1.76 -21.16 16 15 C 0.30 10.86 7.31 138.75 1.01 11.88 16 16 C -0.12 -3.15 6.24 -11.54 -0.07 -3.22 16 17 C -0.15 -3.19 10.01 30.60 0.31 -2.88 16 18 C -0.14 -2.97 10.23 30.60 0.31 -2.65 16 19 N -0.53 -19.85 10.33 -187.85 -1.94 -21.79 16 20 C 0.13 5.05 10.98 84.70 0.93 5.98 16 21 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 22 H 0.34 12.42 9.07 -89.69 -0.81 11.61 16 23 H 0.33 11.99 7.50 -89.69 -0.67 11.31 16 24 H 0.17 6.02 6.82 -2.91 -0.02 6.00 16 25 H 0.14 3.24 8.14 -2.38 -0.02 3.22 16 26 H 0.09 2.36 7.54 -2.39 -0.02 2.34 16 27 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.18 6.00 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -62.96 261.38 0.64 -62.32 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.34 Total: 34.31 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.10 Total: -7.33 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -4.98 Total: -131.23 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.85 Total: 41.93 kcal Total: -62.96 0.64 -62.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.033 kcal (2) G-P(sol) polarization free energy of solvation -62.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds