Wall clock time and date at job start Mon Mar 30 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 N 1.46895 * 109.47429 * 300.00221 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38600 * 120.80185 * 79.72309 * 12 9 7 14 14 N 1.32329 * 119.10778 * 179.71936 * 13 12 9 15 15 C 1.31802 * 120.81795 * 0.56808 * 14 13 12 16 16 C 1.50697 * 119.12248 * 179.68297 * 15 14 13 17 17 C 1.52993 * 117.49927 * 8.64385 * 16 15 14 18 18 C 1.53002 * 60.00227 * 252.50979 * 17 16 15 19 19 N 1.31794 * 121.75155 * 359.70761 * 15 14 13 20 20 C 1.32334 * 120.82061 * 359.97438 * 19 15 14 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99860 * 176.04974 * 11 9 7 23 23 H 1.00904 * 110.99999 * 299.99652 * 11 9 7 24 24 H 1.08008 * 120.44316 * 0.02562 * 13 12 9 25 25 H 1.09003 * 115.55004 * 154.35195 * 16 15 14 26 26 H 1.08998 * 117.50422 * 359.97438 * 17 16 15 27 27 H 1.08998 * 117.50267 * 145.02319 * 17 16 15 28 28 H 1.09001 * 117.49874 * 252.51117 * 18 17 16 29 29 H 1.08997 * 117.49912 * 107.48780 * 18 17 16 30 30 H 1.07998 * 120.45087 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6206 -2.5586 -0.8820 11 7 0.4115 -2.5746 1.2083 12 6 2.2302 -3.6446 0.0028 13 6 2.8582 -4.0440 1.1720 14 7 3.7080 -5.0576 1.1324 15 6 3.9677 -5.6771 -0.0016 16 6 4.9473 -6.8223 -0.0041 17 6 5.4373 -7.3357 1.3512 18 6 6.3777 -6.5293 0.4532 19 7 3.3938 -5.3214 -1.1335 20 6 2.5286 -4.3207 -1.1698 21 1 -0.4850 0.8401 0.0004 22 1 -0.1525 -3.4112 1.2038 23 1 0.9730 -2.5216 2.0450 24 1 2.6530 -3.5379 2.1038 25 1 4.8136 -7.5536 -0.8013 26 1 5.0515 -6.8450 2.2448 27 1 5.6260 -8.4050 1.4461 28 1 7.1850 -7.0682 -0.0427 29 1 6.6102 -5.5084 0.7560 30 1 2.0622 -4.0340 -2.1007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263177.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:52 Heat of formation + Delta-G solvation = 71.892038 kcal Electronic energy + Delta-G solvation = -14176.519763 eV Core-core repulsion = 11779.606694 eV Total energy + Delta-G solvation = -2396.913069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61570 -37.05210 -34.97993 -33.12714 -31.89042 -29.85584 -26.36013 -24.56759 -24.07829 -22.28871 -21.51542 -20.28427 -17.32765 -16.66565 -16.35534 -15.13397 -14.80956 -14.38501 -14.02523 -13.89769 -13.62541 -12.99699 -12.47305 -12.00833 -11.51424 -11.42291 -11.13619 -10.88690 -10.71612 -10.56364 -10.38697 -10.26098 -9.90696 -9.48164 -8.71596 -8.53209 -8.33598 -7.26991 -5.99958 -4.16612 1.48738 1.61841 3.27569 3.35027 3.37892 3.77486 4.14459 4.35672 4.45438 4.60570 4.96466 5.12777 5.22582 5.25292 5.31377 5.64703 5.68028 5.69494 5.81807 6.06848 6.14224 6.19093 6.26765 6.51105 6.97038 7.25463 7.53401 7.77345 8.00349 8.44795 8.60434 8.82552 8.98539 9.53396 11.04150 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.044395 B = 0.006967 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.551967 B = 4018.105668 C = 4225.188797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.087 3.913 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.263 3.737 10 H 0.053 0.947 11 N -0.807 5.807 12 C -0.174 4.174 13 C 0.138 3.862 14 N -0.518 5.518 15 C 0.308 3.692 16 C -0.091 4.091 17 C -0.157 4.157 18 C -0.161 4.161 19 N -0.518 5.518 20 C 0.138 3.862 21 H 0.258 0.742 22 H 0.300 0.700 23 H 0.318 0.682 24 H 0.161 0.839 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.691 -10.353 1.219 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.121 4.121 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.152 3.848 10 H 0.071 0.929 11 N -0.333 5.333 12 C -0.181 4.181 13 C -0.028 4.028 14 N -0.232 5.232 15 C 0.041 3.959 16 C -0.111 4.111 17 C -0.195 4.195 18 C -0.199 4.199 19 N -0.231 5.231 20 C -0.028 4.028 21 H 0.068 0.932 22 H 0.110 0.890 23 H 0.131 0.869 24 H 0.178 0.822 25 H 0.140 0.860 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.775 -10.294 0.951 12.361 hybrid contribution 0.371 0.915 0.132 0.996 sum 7.146 -9.379 1.084 11.841 Atomic orbital electron populations 1.70090 1.05693 1.26039 1.45886 1.24927 0.94672 0.98619 0.93872 0.86706 0.79975 0.83744 0.78137 1.20628 1.21081 1.20009 1.20761 0.92117 0.89243 1.55440 0.92947 1.18128 0.87137 0.88076 0.91437 0.92916 1.59181 1.27852 1.42122 1.04148 1.23576 1.00506 0.99526 0.94449 1.22938 0.90023 0.90876 0.98935 1.67964 1.16413 1.08953 1.29845 1.21817 0.94717 0.94965 0.84409 1.20486 0.93585 0.96902 1.00081 1.22973 1.02528 0.99619 0.94390 1.22947 0.91650 1.01917 1.03380 1.67990 1.09361 1.15967 1.29775 1.23121 0.91817 0.89203 0.98672 0.93195 0.88969 0.86924 0.82181 0.85984 0.87329 0.88628 0.88359 0.88698 0.81871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 12.78 55.43 0.71 -22.83 16 2 C 0.09 2.33 5.39 -17.82 -0.10 2.23 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.05 8.71 -34.44 -0.30 -14.35 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.26 6.09 2.88 -70.02 -0.20 5.89 16 10 H 0.05 1.32 8.04 -51.93 -0.42 0.91 16 11 N -0.81 -17.66 8.39 -6.65 -0.06 -17.72 16 12 C -0.17 -3.53 4.90 -104.35 -0.51 -4.04 16 13 C 0.14 2.64 10.58 -17.20 -0.18 2.46 16 14 N -0.52 -9.61 9.35 -10.72 -0.10 -9.71 16 15 C 0.31 5.57 7.31 -157.19 -1.15 4.42 16 16 C -0.09 -1.28 6.24 -91.78 -0.57 -1.86 16 17 C -0.16 -1.87 10.01 -26.73 -0.27 -2.14 16 18 C -0.16 -1.95 10.23 -26.73 -0.27 -2.22 16 19 N -0.52 -9.84 10.33 -10.72 -0.11 -9.95 16 20 C 0.14 2.66 10.97 -17.20 -0.19 2.47 16 21 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 22 H 0.30 5.87 9.06 -39.29 -0.36 5.51 16 23 H 0.32 6.56 7.45 -39.29 -0.29 6.27 16 24 H 0.16 2.85 6.80 -52.48 -0.36 2.49 16 25 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.11 1.43 7.54 -51.93 -0.39 1.04 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.16 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -29.02 264.48 -7.81 -36.82 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -3.47 Total: 10.81 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.74 Total: -7.14 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.44 Total: -60.21 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.02 -7.81 -36.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263177.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.717 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds