Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34660 * 125.82045 * 2 1 4 4 N 1.37454 * 106.97002 * 180.02562 * 3 2 1 5 5 C 1.38570 * 144.86419 * 180.41940 * 4 3 2 6 6 C 1.50693 * 125.75540 * 359.86113 * 5 4 3 7 7 C 1.32883 * 108.49381 * 179.97438 * 5 4 3 8 8 C 1.50703 * 125.79637 * 179.84232 * 7 5 4 9 9 C 1.50701 * 109.47064 * 84.71523 * 8 7 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99594 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99875 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47061 * 90.00257 * 13 11 9 15 15 H 1.48497 * 109.46906 * 209.99430 * 13 11 9 16 16 H 1.48498 * 109.47403 * 329.99876 * 13 11 9 17 17 N 1.38318 * 108.40963 * 359.57906 * 7 5 4 18 18 H 0.96994 * 126.13605 * 180.22854 * 17 7 5 19 19 C 1.36122 * 107.11110 * 359.97438 * 4 3 2 20 20 N 1.31695 * 108.27369 * 0.02562 * 19 4 3 21 21 H 1.09001 * 109.47451 * 90.00029 * 1 2 3 22 22 H 1.09005 * 109.47528 * 209.99936 * 1 2 3 23 23 H 1.09003 * 109.47350 * 330.00035 * 1 2 3 24 24 H 1.07999 * 126.51416 * 0.02624 * 3 2 1 25 25 H 1.09001 * 109.46961 * 270.15881 * 6 5 4 26 26 H 1.09001 * 109.47068 * 30.16064 * 6 5 4 27 27 H 1.08996 * 109.47087 * 150.15943 * 6 5 4 28 28 H 1.09002 * 109.47152 * 324.71616 * 8 7 5 29 29 H 1.09001 * 109.46980 * 204.71716 * 8 7 5 30 30 H 0.97002 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2950 1.0919 0.0000 4 7 3.5958 0.6478 -0.0006 5 6 4.9259 1.0363 0.0049 6 6 5.4282 2.4571 0.0131 7 6 5.6839 -0.0551 -0.0009 8 6 7.1907 -0.0818 -0.0012 9 6 7.6955 0.0328 1.4141 10 1 6.9952 0.1161 2.2321 11 6 9.0513 0.0301 1.6648 12 7 9.4917 0.1296 2.9000 13 14 10.2624 -0.1149 0.2501 14 1 10.6086 1.2413 -0.2461 15 1 11.4936 -0.7989 0.7206 16 1 9.6480 -0.9022 -0.8489 17 7 4.8552 -1.1625 -0.0005 18 1 5.1396 -2.0898 -0.0009 19 6 3.5545 -0.7128 -0.0003 20 7 2.2920 -1.0876 -0.0002 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.9673 2.1210 0.0004 25 1 5.5494 2.8056 -1.0125 26 1 4.7102 3.0933 0.5306 27 1 6.3883 2.5000 0.5272 28 1 7.5688 0.7536 -0.5906 29 1 7.5374 -1.0194 -0.4359 30 1 10.4456 0.1280 3.0764 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267353.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = 84.532259 kcal Electronic energy + Delta-G solvation = -14336.116254 eV Core-core repulsion = 11939.751306 eV Total energy + Delta-G solvation = -2396.364948 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.24461 -39.63824 -35.32712 -34.70800 -33.19672 -31.27009 -30.70142 -27.81014 -26.85596 -24.13448 -22.59918 -21.07361 -20.63857 -19.04725 -18.12354 -17.25562 -17.15587 -16.37685 -15.21544 -14.97800 -14.47930 -14.38376 -14.10635 -13.77970 -13.73995 -13.49275 -13.24342 -13.00972 -12.80514 -12.52317 -12.29270 -11.89530 -11.70886 -11.50677 -10.96814 -10.79484 -9.04692 -8.51970 -8.29653 -6.38464 0.83250 1.41286 1.43878 1.46130 1.48597 1.54926 2.01525 2.13201 2.36327 3.04977 3.54080 3.76082 4.15907 4.22582 4.39422 4.58638 4.67818 4.76627 4.84009 4.91118 4.95506 5.01750 5.12248 5.17532 5.31730 5.45063 5.64861 5.84685 6.18283 6.35322 6.47610 6.68061 7.15262 7.25559 8.86376 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.056545 B = 0.006963 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.060085 B = 4020.048953 C = 4132.715322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.032 3.968 3 C -0.106 4.106 4 N -0.402 5.402 5 C -0.051 4.051 6 C -0.065 4.065 7 C 0.117 3.883 8 C 0.057 3.943 9 C -0.524 4.524 10 H 0.025 0.975 11 C 0.016 3.984 12 N -0.946 5.946 13 Si 0.949 3.051 14 H -0.259 1.259 15 H -0.289 1.289 16 H -0.239 1.239 17 N -0.581 5.581 18 H 0.441 0.559 19 C 0.356 3.644 20 N -0.546 5.546 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.201 0.799 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 3.206 -9.342 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.236 4.236 4 N -0.080 5.080 5 C -0.156 4.156 6 C -0.123 4.123 7 C 0.009 3.991 8 C 0.018 3.982 9 C -0.562 4.562 10 H 0.044 0.956 11 C -0.182 4.182 12 N -0.585 5.585 13 Si 0.771 3.229 14 H -0.183 1.183 15 H -0.215 1.215 16 H -0.162 1.162 17 N -0.202 5.202 18 H 0.282 0.718 19 C 0.006 3.994 20 N -0.278 5.278 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.114 0.886 24 H 0.218 0.782 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.238 2.552 -9.237 14.023 hybrid contribution 1.201 0.015 0.223 1.222 sum -9.037 2.567 -9.014 13.019 Atomic orbital electron populations 1.20128 0.84051 1.03760 1.03438 1.21360 0.97915 0.86511 1.04074 1.22315 0.78551 1.01744 1.20970 1.43795 1.05800 1.08728 1.49716 1.20095 0.78665 0.98404 1.18412 1.20211 1.01674 0.86916 1.03492 1.20649 0.94493 0.83016 1.00974 1.18328 0.82882 1.00035 0.96935 1.20938 0.92112 1.51691 0.91475 0.95623 1.25903 1.00266 0.93578 0.98436 1.70051 1.15337 1.51222 1.21907 0.85690 0.77822 0.79874 0.79522 1.18343 1.21527 1.16198 1.41219 0.99734 1.09736 1.69538 0.71765 1.20766 0.88539 0.81697 1.08351 1.70145 0.95111 1.31090 1.31488 0.89845 0.91368 0.88622 0.78191 0.89349 0.90917 0.90088 0.91442 0.93246 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.20 10.42 71.23 0.74 -0.46 16 2 C 0.03 1.03 7.08 41.38 0.29 1.32 16 3 C -0.11 -3.40 11.94 82.99 0.99 -2.41 16 4 N -0.40 -15.39 3.53 -343.03 -1.21 -16.60 16 5 C -0.05 -1.96 7.15 40.32 0.29 -1.68 16 6 C -0.07 -2.03 10.02 71.23 0.71 -1.31 16 7 C 0.12 4.70 6.34 40.36 0.26 4.95 16 8 C 0.06 2.36 4.02 29.10 0.12 2.48 16 9 C -0.52 -27.73 9.65 25.60 0.25 -27.48 16 10 H 0.03 1.57 7.98 -2.91 -0.02 1.55 16 11 C 0.02 0.88 5.47 84.66 0.46 1.34 16 12 N -0.95 -56.08 13.96 21.45 0.30 -55.78 16 13 Si 0.95 39.39 27.47 68.60 1.88 41.27 16 14 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 15 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.24 -8.87 6.54 99.48 0.65 -8.22 16 17 N -0.58 -22.41 6.27 -184.58 -1.16 -23.57 16 18 H 0.44 14.72 8.96 -92.71 -0.83 13.89 16 19 C 0.36 14.47 9.64 260.55 2.51 16.98 16 20 N -0.55 -21.57 11.30 -186.25 -2.10 -23.68 16 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.20 4.79 8.06 -2.91 -0.02 4.77 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.78 7.76 -2.39 -0.02 2.76 16 28 H 0.07 2.57 7.33 -2.39 -0.02 2.55 16 29 H 0.05 1.94 7.20 -2.39 -0.02 1.92 16 30 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -68.16 261.32 4.60 -63.56 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.27 Total: 21.06 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 6.62 Total: -6.27 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -4.17 Total: -119.63 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.88 Total: 41.27 kcal Total: -68.16 4.60 -63.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267353.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.096 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds