Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.39746 * 110.99489 * 145.84642 * 13 12 11 15 15 C 1.39271 * 120.86935 * 119.85091 * 14 13 12 16 16 N 1.32271 * 119.00689 * 179.72139 * 15 14 13 17 17 C 1.31797 * 120.89173 * 0.56205 * 16 15 14 18 18 N 1.31786 * 121.93848 * 359.70711 * 17 16 15 19 19 C 1.32269 * 120.89669 * 0.02562 * 18 17 16 20 20 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 23 23 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 24 24 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 25 25 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 26 26 H 1.08000 * 120.50398 * 359.97015 * 15 14 13 27 27 H 1.08003 * 119.02924 * 179.73221 * 17 16 15 28 28 H 1.07995 * 120.49340 * 180.02562 * 19 18 17 29 29 H 1.09001 * 110.66521 * 202.35739 * 20 13 12 30 30 H 1.08995 * 110.66819 * 79.22106 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.8794 -3.6090 -1.3058 15 6 7.0799 -4.1902 -0.9049 16 7 7.4831 -5.3024 -1.4965 17 6 6.7713 -5.8530 -2.4594 18 7 5.6333 -5.3311 -2.8709 19 6 5.1584 -4.2228 -2.3270 20 6 4.0599 -2.6376 -0.1258 21 1 -0.4850 0.8400 -0.0004 22 1 3.3031 -0.5011 -2.0542 23 1 4.3715 0.5157 -1.0407 24 1 5.0986 -1.7732 -2.6867 25 1 6.1703 -0.7342 -1.7082 26 1 7.6708 -3.7418 -0.1199 27 1 7.1311 -6.7588 -2.9247 28 1 4.2249 -3.8010 -2.6690 29 1 4.1258 -3.1115 0.8535 30 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = 61.464220 kcal Electronic energy + Delta-G solvation = -14494.996172 eV Core-core repulsion = 12097.630919 eV Total energy + Delta-G solvation = -2397.365253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.10387 -38.42568 -33.74185 -33.65233 -31.87671 -29.13254 -28.53437 -25.00964 -24.47368 -23.13585 -20.79702 -19.74209 -17.70506 -17.51330 -16.97122 -15.98549 -14.94753 -14.58603 -14.24337 -13.64180 -13.57230 -13.49931 -12.74618 -12.45374 -12.13909 -11.69627 -11.25871 -10.79477 -10.73772 -10.71254 -10.14595 -10.09653 -9.75432 -9.48521 -9.15264 -9.08378 -8.65487 -8.17924 -6.16722 -4.17845 0.88257 1.09426 3.22321 3.32844 3.33913 3.77899 4.00536 4.22046 4.28733 4.33838 4.63523 5.06964 5.13795 5.31517 5.39427 5.51887 5.73686 5.86736 5.98447 6.06781 6.31580 6.36701 6.54630 6.59076 6.82173 6.87267 6.98994 7.34481 7.48754 7.66101 8.08199 8.40135 8.85191 9.44756 10.96053 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.058779 B = 0.007311 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.247927 B = 3829.130284 C = 4013.661887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.292 1.292 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.019 3.981 10 H 0.043 0.957 11 C -0.142 4.142 12 C 0.044 3.956 13 N -0.484 5.484 14 C -0.001 4.001 15 C 0.161 3.839 16 N -0.517 5.517 17 C 0.273 3.727 18 N -0.514 5.514 19 C 0.117 3.883 20 C 0.055 3.945 21 H 0.265 0.735 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.172 0.828 27 H 0.193 0.807 28 H 0.167 0.833 29 H 0.075 0.925 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.126 -5.241 -3.584 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.187 1.187 6 H -0.219 1.219 7 C -0.555 4.555 8 H 0.093 0.907 9 C -0.001 4.001 10 H 0.061 0.939 11 C -0.181 4.181 12 C -0.082 4.082 13 N -0.207 5.207 14 C -0.100 4.100 15 C -0.005 4.005 16 N -0.231 5.231 17 C -0.014 4.014 18 N -0.228 5.228 19 C -0.051 4.051 20 C -0.070 4.070 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.189 0.811 27 H 0.210 0.790 28 H 0.184 0.816 29 H 0.094 0.906 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.667 -5.823 -3.611 14.401 hybrid contribution -0.557 1.496 -0.311 1.627 sum 12.109 -4.327 -3.922 13.444 Atomic orbital electron populations 1.69896 1.06321 1.27123 1.50214 1.24972 0.94647 0.99042 0.94173 0.86922 0.80197 0.83596 0.78525 1.20279 1.18725 1.21924 1.20908 0.88188 0.94649 1.51740 0.90714 1.20058 0.96468 0.90094 0.93443 0.93874 1.22971 0.95517 0.98192 1.01401 1.22963 0.99783 0.92734 0.92671 1.62524 1.27192 1.02289 1.28725 1.21024 0.97094 0.95613 0.96231 1.23249 0.92062 0.89347 0.95859 1.68427 1.34563 1.10503 1.09608 1.24872 0.87271 0.98614 0.90677 1.68322 1.14222 1.11309 1.28915 1.23977 0.99143 0.90472 0.91511 1.23416 0.84487 1.00402 0.98738 0.92514 0.90698 0.92654 0.94078 0.90898 0.81072 0.79028 0.81577 0.90635 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.88 20.77 24.73 -169.99 -4.20 16.57 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.26 -5.94 6.38 56.52 0.36 -5.58 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.52 -13.71 9.00 -34.44 -0.31 -14.02 16 8 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 9 C 0.02 0.42 2.46 -89.91 -0.22 0.19 16 10 H 0.04 0.99 7.36 -51.93 -0.38 0.60 16 11 C -0.14 -2.81 4.69 -25.37 -0.12 -2.93 16 12 C 0.04 0.73 6.54 -2.76 -0.02 0.71 16 13 N -0.48 -8.04 5.30 -166.92 -0.89 -8.93 16 14 C 0.00 -0.01 4.87 -83.48 -0.41 -0.41 16 15 C 0.16 2.21 11.26 -16.98 -0.19 2.02 16 16 N -0.52 -7.06 10.43 -14.43 -0.15 -7.21 16 17 C 0.27 3.51 12.27 -92.16 -1.13 2.38 16 18 N -0.51 -7.52 10.43 -14.43 -0.15 -7.67 16 19 C 0.12 1.76 9.21 -16.98 -0.16 1.61 16 20 C 0.05 1.03 5.84 -1.90 -0.01 1.02 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.07 1.55 7.80 -51.93 -0.40 1.15 16 23 H 0.05 1.08 5.94 -51.93 -0.31 0.77 16 24 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.19 1.76 8.06 -52.48 -0.42 1.33 16 28 H 0.17 2.47 7.20 -52.49 -0.38 2.10 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.05 0.94 6.63 -51.93 -0.34 0.60 16 LS Contribution 247.45 15.07 3.73 3.73 Total: -1.00 -29.08 247.45 -7.01 -36.09 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.46 Total: 0.69 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.66 Total: -7.49 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.41 Total: -49.59 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.20 Total: 16.57 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.08 -7.01 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.553 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds